1 <?xml version="1.0" encoding="Windows-1252"?>
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3 ProjectType="Visual C++"
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6 ProjectGUID="{57FBAB99-B961-4B38-B846-CA26D63384F2}"
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7 RootNamespace="muscle3.6"
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9 TargetFrameworkVersion="131072"
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21 OutputDirectory="Debug"
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22 IntermediateDirectory="Debug"
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23 ConfigurationType="1"
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24 InheritedPropertySheets="$(VCInstallDir)VCProjectDefaults\UpgradeFromVC70.vsprops"
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47 PreprocessorDefinitions="WIN32;_DEBUG;_CONSOLE;_WIN32_WINNT=0x0400"
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48 MinimalRebuild="true"
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49 BasicRuntimeChecks="3"
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51 UsePrecompiledHeader="0"
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52 BrowseInformation="1"
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54 Detect64BitPortabilityProblems="false"
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55 DebugInformationFormat="4"
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58 Name="VCManagedResourceCompilerTool"
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61 Name="VCResourceCompilerTool"
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64 Name="VCPreLinkEventTool"
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68 AdditionalDependencies="psapi.lib user32.lib"
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69 OutputFile="$(OutDir)/muscle.exe"
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71 GenerateDebugInformation="true"
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72 ProgramDatabaseFile="$(OutDir)/muscle.pdb"
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74 RandomizedBaseAddress="1"
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75 DataExecutionPrevention="0"
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101 Name="Release|Win32"
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102 OutputDirectory="Release"
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130 PreprocessorDefinitions="WIN32;NDEBUG;_CONSOLE;_WIN32_WINNT=0x0400"
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152 AdditionalDependencies="psapi.lib user32.lib"
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153 OutputFile="$(OutDir)/muscle.exe"
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154 LinkIncremental="1"
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155 GenerateDebugInformation="true"
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157 OptimizeReferences="2"
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158 EnableCOMDATFolding="2"
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159 RandomizedBaseAddress="1"
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160 DataExecutionPrevention="0"
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190 Name="Source Files"
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191 Filter="cpp;c;cxx;def;odl;idl;hpj;bat;asm"
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194 RelativePath="aligngivenpath.cpp"
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198 RelativePath="aligngivenpathsw.cpp"
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202 RelativePath="aligntwomsas.cpp"
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206 RelativePath="aligntwoprofs.cpp"
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210 RelativePath="aln.cpp"
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214 RelativePath="alpha.cpp"
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218 RelativePath="anchors.cpp"
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222 RelativePath="bittraceback.cpp"
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226 RelativePath=".\blosum62.cpp"
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230 RelativePath="blosumla.cpp"
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234 RelativePath="clust.cpp"
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238 RelativePath="cluster.cpp"
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242 RelativePath="clwwt.cpp"
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246 RelativePath="color.cpp"
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250 RelativePath="cons.cpp"
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254 RelativePath="diaglist.cpp"
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258 RelativePath="diffobjscore.cpp"
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262 RelativePath="diffpaths.cpp"
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266 RelativePath="difftrees.cpp"
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270 RelativePath="difftreese.cpp"
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274 RelativePath="distcalc.cpp"
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278 RelativePath="distfunc.cpp"
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282 RelativePath="distpwkimura.cpp"
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286 RelativePath="domuscle.cpp"
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290 RelativePath="dosp.cpp"
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294 RelativePath="dpreglist.cpp"
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298 RelativePath="drawtree.cpp"
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302 RelativePath="edgelist.cpp"
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306 RelativePath="enumopts.cpp"
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310 RelativePath="enumtostr.cpp"
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314 RelativePath="estring.cpp"
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318 RelativePath="fasta.cpp"
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322 RelativePath="fasta2.cpp"
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326 RelativePath="fastclust.cpp"
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330 RelativePath="fastdist.cpp"
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334 RelativePath="fastdistjones.cpp"
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338 RelativePath="fastdistkbit.cpp"
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342 RelativePath="fastdistkmer.cpp"
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346 RelativePath="fastdistmafft.cpp"
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350 RelativePath="fastdistnuc.cpp"
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354 RelativePath="fastscorepath2.cpp"
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358 RelativePath="finddiags.cpp"
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362 RelativePath="finddiagsn.cpp"
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366 RelativePath="glbalign.cpp"
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370 RelativePath="glbalign352.cpp"
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374 RelativePath="glbaligndiag.cpp"
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378 RelativePath="glbalignle.cpp"
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382 RelativePath="glbalignsimple.cpp"
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386 RelativePath="glbalignsp.cpp"
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390 RelativePath="glbalignspn.cpp"
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394 RelativePath="glbalignss.cpp"
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398 RelativePath="glbalndimer.cpp"
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402 RelativePath="globals.cpp"
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406 RelativePath="globalslinux.cpp"
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410 RelativePath=".\globalsosx.cpp"
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414 RelativePath=".\globalsother.cpp"
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418 RelativePath="globalswin32.cpp"
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422 RelativePath="gonnet.cpp"
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426 RelativePath="henikoffweight.cpp"
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430 RelativePath="henikoffweightpb.cpp"
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434 RelativePath="html.cpp"
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438 RelativePath="hydro.cpp"
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442 RelativePath="intmath.cpp"
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446 RelativePath="local.cpp"
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450 RelativePath="main.cpp"
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454 RelativePath="makerootmsa.cpp"
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458 RelativePath="makerootmsab.cpp"
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462 RelativePath=".\maketree.cpp"
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466 RelativePath="mhack.cpp"
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470 RelativePath="mpam200.cpp"
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474 RelativePath="msa.cpp"
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478 RelativePath="msa2.cpp"
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482 RelativePath="msadistkimura.cpp"
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486 RelativePath="msf.cpp"
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490 RelativePath="muscle.cpp"
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494 RelativePath="muscleout.cpp"
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498 RelativePath="nucmx.cpp"
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502 RelativePath="nwdasimple.cpp"
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506 RelativePath="nwdasimple2.cpp"
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510 RelativePath="nwdasmall.cpp"
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514 RelativePath="nwrec.cpp"
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518 RelativePath="nwsmall.cpp"
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522 RelativePath="objscore.cpp"
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526 RelativePath="objscore2.cpp"
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530 RelativePath="objscoreda.cpp"
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534 RelativePath="onexception.cpp"
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538 RelativePath="options.cpp"
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542 RelativePath="outweights.cpp"
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546 RelativePath="pam200mafft.cpp"
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550 RelativePath="params.cpp"
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554 RelativePath="phy.cpp"
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558 RelativePath="phy2.cpp"
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562 RelativePath="phy3.cpp"
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566 RelativePath="phy4.cpp"
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570 RelativePath="phyfromclust.cpp"
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574 RelativePath="phyfromfile.cpp"
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578 RelativePath="physeq.cpp"
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582 RelativePath="phytofile.cpp"
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586 RelativePath="posgap.cpp"
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590 RelativePath="ppscore.cpp"
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594 RelativePath="profdb.cpp"
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598 RelativePath="profile.cpp"
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602 RelativePath="profilefrommsa.cpp"
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606 RelativePath="progalign.cpp"
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610 RelativePath="progress.cpp"
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614 RelativePath="progressivealign.cpp"
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618 RelativePath="pwpath.cpp"
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622 RelativePath="readmx.cpp"
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626 RelativePath="realigndiffs.cpp"
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630 RelativePath="realigndiffse.cpp"
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634 RelativePath="refine.cpp"
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638 RelativePath="refinehoriz.cpp"
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642 RelativePath="refinesubfams.cpp"
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646 RelativePath="refinetree.cpp"
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650 RelativePath="refinetreee.cpp"
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654 RelativePath="refinevert.cpp"
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658 RelativePath="refinew.cpp"
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662 RelativePath="savebest.cpp"
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666 RelativePath=".\scoredist.cpp"
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670 RelativePath="scoregaps.cpp"
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674 RelativePath="scorehistory.cpp"
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678 RelativePath="scorepp.cpp"
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682 RelativePath="seq.cpp"
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686 RelativePath="seqvect.cpp"
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690 RelativePath="setblosumweights.cpp"
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694 RelativePath="setgscweights.cpp"
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698 RelativePath="setnewhandler.cpp"
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702 RelativePath="spfast.cpp"
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706 RelativePath="sptest.cpp"
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710 RelativePath="stabilize.cpp"
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714 RelativePath="subfam.cpp"
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718 RelativePath="subfams.cpp"
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722 RelativePath="sw.cpp"
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726 RelativePath="termgaps.cpp"
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730 RelativePath="textfile.cpp"
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734 RelativePath="threewaywt.cpp"
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738 RelativePath=".\tomhydro.cpp"
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742 RelativePath="traceback.cpp"
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746 RelativePath="tracebackopt.cpp"
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750 RelativePath="tracebacksw.cpp"
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754 RelativePath="treefrommsa.cpp"
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758 RelativePath="typetostr.cpp"
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762 RelativePath="upgma2.cpp"
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766 RelativePath="usage.cpp"
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770 RelativePath="validateids.cpp"
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774 RelativePath="vtml2.cpp"
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778 RelativePath="writescorefile.cpp"
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783 Name="Header Files"
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784 Filter="h;hpp;hxx;hm;inl;inc"
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787 RelativePath="alpha.h"
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791 RelativePath="clust.h"
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795 RelativePath="cluster.h"
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799 RelativePath="clustset.h"
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803 RelativePath="clustsetdf.h"
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807 RelativePath="clustsetmsa.h"
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811 RelativePath="consts.h"
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815 RelativePath="diaglist.h"
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819 RelativePath="distcalc.h"
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823 RelativePath="distfunc.h"
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827 RelativePath="dpregionlist.h"
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831 RelativePath="dpreglist.h"
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835 RelativePath="edgelist.h"
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839 RelativePath="enumopts.h"
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843 RelativePath="enums.h"
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847 RelativePath="estring.h"
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851 RelativePath="gapscoredimer.h"
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855 RelativePath="gonnet.h"
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859 RelativePath="intmath.h"
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863 RelativePath="msa.h"
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867 RelativePath="msadist.h"
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871 RelativePath="muscle.h"
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875 RelativePath="objscore.h"
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879 RelativePath="params.h"
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883 RelativePath="profile.h"
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887 RelativePath="scorehistory.h"
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891 RelativePath="seq.h"
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895 RelativePath="seqvect.h"
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899 RelativePath="textfile.h"
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903 RelativePath="timing.h"
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907 RelativePath="tree.h"
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911 RelativePath="types.h"
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915 RelativePath="unixio.h"
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922 </VisualStudioProject>
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