3 // BLASTZ default parameters
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4 // open 400, extend 30, matrix as below
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6 const float NUC_EXTEND = 30;
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7 const float NUC_SP_CENTER = 2*NUC_EXTEND;
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9 #define v(x) ((float) x + NUC_SP_CENTER)
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10 #define ROW(A, C, G, T) \
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11 { v(A), v(C), v(G), v(T) },
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13 float NUC_SP[32][32] =
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16 ROW( 91, -114, -31, -123) // A
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18 ROW( -114, 100, -125, -31) // C
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20 ROW( -31, -125, 100, -114) // G
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22 ROW( -123, -31, -114, 91) // T
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