1 2010-06-17 Release 0.0.1 (Dubliniensis)
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3 First "release" as program has been able for a while to perform
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4 all basic tasks without problems.
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6 Non-standard features already built-in include:
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7 HMM-iteration (using HMMER for building an HMM) and guide-tree
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8 iteration. On top of that HMM input works fine and
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9 background-frequencies are added to the HHalign process.
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11 Known issues: RNA/DNA alignment is considered buggy. Aligned
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12 sequences have to be dealigned for HHalign to work properly.
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14 The HMMER version message can be ignored if no HMM-iteration
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