5 WARNING: Unsupported old command line option '-auto' will be ignored
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6 WARNING: Your old-style command-line options were converted to: D:\workspace\JABA2\binaries\windows\clustalo\clustalo.exe --outfmt=clustal --log=stat.log --infile=D:\workspace\JABA2\testsrc\testdata\TO1381.fasta --outfile=TO1381.clustal.out -o clustal.aln -v --force
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7 WARNING: This is a beta version of Clustal Omega, for protein only.
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8 For more information try: D:\workspace\JABA2\binaries\windows\clustalo\clustalo.exe --help
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