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7 compbio.data.sequence
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83 Package compbio.data.sequence
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85 A data model for multiple sequence alignment web services
86 Classes in this package have no dependencies to other sources in the project.
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90 <A HREF="#package_description"><B>Description</B></A>
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95 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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96 <B>Class Summary</B></FONT></TH>
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98 <TR BGCOLOR="white" CLASS="TableRowColor">
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99 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A></B></TD>
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100 <TD>Multiple sequence alignment.</TD>
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102 <TR BGCOLOR="white" CLASS="TableRowColor">
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103 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</A></B></TD>
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104 <TD>Alignment metadata e.g.</TD>
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106 <TR BGCOLOR="white" CLASS="TableRowColor">
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107 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A></B></TD>
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108 <TD>Tools to read and write clustal formated files</TD>
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110 <TR BGCOLOR="white" CLASS="TableRowColor">
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111 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A></B></TD>
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112 <TD>A FASTA formatted sequence.</TD>
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114 <TR BGCOLOR="white" CLASS="TableRowColor">
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115 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A></B></TD>
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116 <TD>Utility class for operations on sequences</TD>
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126 <B>Enum Summary</B></FONT></TH>
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129 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A></B></TD>
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130 <TD>Programmes that can produce alignments</TD>
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137 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
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139 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
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140 <B>Exception Summary</B></FONT></TH>
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142 <TR BGCOLOR="white" CLASS="TableRowColor">
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143 <TD WIDTH="15%"><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">UnknownFileFormatException</A></B></TD>
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150 <A NAME="package_description"><!-- --></A><H2>
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151 Package compbio.data.sequence Description
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155 A data model for multiple sequence alignment web services
156 Classes in this package have no dependencies to other sources in the project.
157 They form a base layer of Jalview Web Services v2.
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162 <DT><B>Author:</B></DT>
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165 Date January 2010</DD>
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