1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>
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3 <runnerClassName>compbio.runner.conservation.AACon</runnerClassName>
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5 <name>Quick conservation</name>
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6 <description>Collection of fast conservation methods</description>
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8 <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON</option>
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12 <name>Slow conservation</name>
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13 <description>Collection of most expensive (slow) conservation methods</description>
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15 <option>-m=LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>
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19 <name>Complete conservation</name>
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20 <description>Calculate conservation with all supported methods</description>
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22 <option>-m=KABAT,JORES,SCHNEIDER,SHENKIN,GERSTEIN,TAYLOR_GAPS,TAYLOR_NO_GAPS,ZVELIBIL,ARMON,THOMPSON,NOT_LANCET,MIRNY,WILLIAMSON,LANDGRAF,KARLIN,SANDER,VALDAR,SMERFS</option>
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