1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>
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3 <runnerClassName>compbio.runner.disorder.Disembl</runnerClassName>
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4 <prmSeparator>=</prmSeparator>
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6 <name>Savitzky-Golay smoothing frame</name>
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7 <description>Algorithm Parameter: Savitzky-Golay smoothing frame</description>
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8 <optionNames>sg</optionNames>
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9 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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10 <defaultValue>8</defaultValue>
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12 <type>Integer</type>
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18 These can be supported but not recommended to change so what's the point?
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20 Manual: Normally the default parameters should not be changed.
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23 <name>Minimum peak width</name>
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24 <description>Algorithm Parameter: Minimum peak width.</description>
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25 <optionNames>pw</optionNames>
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26 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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27 <defaultValue>8</defaultValue>
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29 <type>Integer</type>
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35 <name>Maximum join distance</name>
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36 <description>Algorithm Parameter: Maximum join distance</description>
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37 <optionNames>jd</optionNames>
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38 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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39 <defaultValue>4</defaultValue>
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41 <type>Integer</type>
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47 <name>Coils threshold</name>
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48 <description>Stringency values for different predictor: Coils threshold</description>
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49 <optionNames>ct</optionNames>
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50 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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51 <defaultValue>1.2</defaultValue>
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59 <name>Remark465 threshold</name>
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60 <description>Stringency values for different predictor: Remark465 threshold</description>
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61 <optionNames>rt</optionNames>
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62 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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63 <defaultValue>1.4</defaultValue>
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71 <name>Hot loops threshold</name>
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72 <description>Stringency values for different predictor: Hot loops threshold.</description>
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73 <optionNames>lt</optionNames>
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74 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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75 <defaultValue>1.2</defaultValue>
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