1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>
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4 Extreme variation of this parameter does not have any impact on the output
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7 <runnerClassName>compbio.runner.disorder.Disembl</runnerClassName>
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8 <prmSeparator>=</prmSeparator>
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10 <name>Savitzky-Golay smoothing frame</name>
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11 <description>Algorithm Parameter: Savitzky-Golay smoothing frame</description>
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12 <optionNames>sg</optionNames>
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13 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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14 <defaultValue>8</defaultValue>
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16 <type>Integer</type>
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22 These can be supported but not recommended to change so what's the point?
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24 Manual: Normally the default parameters should not be changed.
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27 <name>Minimum peak width</name>
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28 <description>Algorithm Parameter: Minimum peak width.</description>
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29 <optionNames>pw</optionNames>
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30 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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31 <defaultValue>8</defaultValue>
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33 <type>Integer</type>
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39 <name>Maximum join distance</name>
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40 <description>Algorithm Parameter: Maximum join distance</description>
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41 <optionNames>jd</optionNames>
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42 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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43 <defaultValue>4</defaultValue>
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45 <type>Integer</type>
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51 <name>Coils threshold</name>
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52 <description>Stringency values for different predictor: Coils threshold</description>
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53 <optionNames>ct</optionNames>
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54 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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55 <defaultValue>1.2</defaultValue>
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63 <name>Remark465 threshold</name>
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64 <description>Stringency values for different predictor: Remark465 threshold</description>
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65 <optionNames>rt</optionNames>
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66 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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67 <defaultValue>1.4</defaultValue>
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75 <name>Hot loops threshold</name>
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76 <description>Stringency values for different predictor: Hot loops threshold.</description>
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77 <optionNames>lt</optionNames>
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78 <furtherDetails>prog_docs/disembl.html</furtherDetails>
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79 <defaultValue>1.2</defaultValue>
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