1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>
\r
3 <!-- Extreme variation of this parameter does not have any impact on the output so irrelevant.
\r
4 <runnerClassName>compbio.runner.disorder.Disembl</runnerClassName>
\r
6 <prmSeparator>=</prmSeparator>
\r
9 <name>Savitzky-Golay smoothing frame</name>
\r
10 <description>Algorithm Parameter: Savitzky-Golay smoothing frame</description>
\r
11 <optionNames>sg</optionNames>
\r
12 <furtherDetails>prog_docs/disembl.html</furtherDetails>
\r
13 <defaultValue>8</defaultValue>
\r
15 <type>Integer</type>
\r
21 These can be supported but not recommended to change so what's the point?
\r
22 Manual: Normally the default parameters should not be changed.
\r
25 <name>Minimum peak width</name>
\r
26 <description>Algorithm Parameter: Minimum peak width.</description>
\r
27 <optionNames>pw</optionNames>
\r
28 <furtherDetails>prog_docs/disembl.html</furtherDetails>
\r
29 <defaultValue>8</defaultValue>
\r
31 <type>Integer</type>
\r
38 <name>Maximum join distance</name>
\r
39 <description>Algorithm Parameter: Maximum join distance</description>
\r
40 <optionNames>jd</optionNames>
\r
41 <furtherDetails>prog_docs/disembl.html</furtherDetails>
\r
42 <defaultValue>4</defaultValue>
\r
44 <type>Integer</type>
\r
51 <name>Coils threshold</name>
\r
52 <description>Stringency values for different predictor: Coils threshold</description>
\r
53 <optionNames>ct</optionNames>
\r
54 <furtherDetails>prog_docs/disembl.html</furtherDetails>
\r
55 <defaultValue>1.2</defaultValue>
\r
64 <name>Remark465 threshold</name>
\r
65 <description>Stringency values for different predictor: Remark465 threshold</description>
\r
66 <optionNames>rt</optionNames>
\r
67 <furtherDetails>prog_docs/disembl.html</furtherDetails>
\r
68 <defaultValue>1.4</defaultValue>
\r
77 <name>Hot loops threshold</name>
\r
78 <description>Stringency values for different predictor: Hot loops threshold.</description>
\r
79 <optionNames>lt</optionNames>
\r
80 <furtherDetails>prog_docs/disembl.html</furtherDetails>
\r
81 <defaultValue>1.2</defaultValue>
\r