1 /* Copyright (c) 2009 Peter Troshin
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3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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19 package compbio.data.sequence;
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21 import javax.xml.bind.annotation.XmlAccessType;
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22 import javax.xml.bind.annotation.XmlAccessorType;
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24 import compbio.util.annotation.Immutable;
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27 * Alignment metadata e.g. method/program being used to generate the alignment
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28 * and its parameters
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32 * @version 1.0 September 2009
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35 @XmlAccessorType(XmlAccessType.FIELD)
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36 public class AlignmentMetadata {
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38 private Program program;
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39 private char gapchar;
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41 private AlignmentMetadata() {
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42 // Default no args constructor required for JAXB
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45 public AlignmentMetadata(Program program, char gapchar) {
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46 this.program = program;
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47 this.gapchar = gapchar;
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50 public Program getProgram() {
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54 public char getGapchar() {
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59 public boolean equals(Object obj) {
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63 if (!(obj instanceof AlignmentMetadata)) {
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66 AlignmentMetadata alm = (AlignmentMetadata) obj;
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67 if (alm.getProgram() != this.getProgram()) {
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70 if (alm.getGapchar() != this.getGapchar()) {
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77 public int hashCode() {
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78 return getProgram().hashCode() * getGapchar() * 13;
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