1 package compbio.data.sequence;
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3 import java.io.BufferedWriter;
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4 import java.io.IOException;
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5 import java.io.OutputStream;
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6 import java.io.OutputStreamWriter;
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7 import java.text.NumberFormat;
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8 import java.util.Arrays;
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9 import java.util.List;
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10 import java.util.Locale;
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11 import java.util.Set;
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13 import javax.xml.bind.annotation.XmlAccessType;
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14 import javax.xml.bind.annotation.XmlAccessorType;
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16 import compbio.util.annotation.Immutable;
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18 @XmlAccessorType(XmlAccessType.FIELD)
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20 public class Score {
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22 public static final NumberFormat NUMBER_FORMAT = NumberFormat
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23 .getNumberInstance(Locale.UK);
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25 NUMBER_FORMAT.setGroupingUsed(false);
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26 NUMBER_FORMAT.setMaximumFractionDigits(3);
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29 private ConservationMethod method;
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31 private List<Float> scores;
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34 // JaXB default constructor
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37 public Score(ConservationMethod method, List<Float> scores) {
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38 this.method = method;
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39 this.scores = scores;
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42 public ConservationMethod getMethod() {
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46 public List<Float> getScores() {
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51 public String toString() {
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52 return "Score [method=" + method + ", scores=" + scores + "]";
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56 public int hashCode() {
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57 final int prime = 31;
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59 result = prime * result + ((method == null) ? 0 : method.hashCode());
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60 result = prime * result + ((scores == null) ? 0 : scores.hashCode());
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65 * TODO test ! (non-Javadoc)
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67 * @see java.lang.Object#equals(java.lang.Object)
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70 public boolean equals(Object obj) {
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75 if (getClass() != obj.getClass())
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77 Score other = (Score) obj;
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78 if (method != other.method)
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80 if (scores == other.scores) {
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83 if (scores == null) {
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86 if (!Arrays.deepEquals(scores.toArray(), other.scores.toArray()))
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91 public static void write(Set<Score> scores, OutputStream output)
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92 throws IOException {
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93 BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(
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95 for (Score score : scores) {
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96 writer.write("#" + score.method + " ");
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97 for (Float scoreVal : score.getScores()) {
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98 writer.write(NUMBER_FORMAT.format(scoreVal) + " ");
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100 writer.write("\n");
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