2 PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
3 <html xmlns="http://www.w3.org/1999/xhtml">
5 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
6 <title>Schema documentation for </title>
7 <link rel="stylesheet" href="xsdDocHtml.css" type="text/css" /><script type="text/javascript">
9 var propertiesBoxes= new Array('properties_id1',
131 var usedByBoxes= new Array('usedBy_id5',
219 var sourceBoxes= new Array('source_id5',
347 var instanceBoxes= new Array('instance_id5',
372 var diagramBoxes= new Array('diagram_id5',
433 var annotationBoxes= new Array('annotations_id1',
506 'annotations_id131');
508 var attributesBoxes= new Array('attributes_id6',
547 var button_prefix = 'button_';
550 * Returns an element in the current HTML document.
552 * @param elementID Identifier of HTML element
553 * @return HTML element object
555 function getElementObject(elementID) {
557 if (document.getElementById) {
558 elemObj = document.getElementById(elementID);
564 * Switches the state of a collapseable box, e.g.
565 * if it's opened, it'll be closed, and vice versa.
567 * @param boxID Identifier of box
569 function switchState(boxID) {
570 var boxObj = getElementObject(boxID);
571 var buttonObj = getElementObject(button_prefix + boxID);
572 if (boxObj == null || buttonObj == null) {
573 // Box or button not found
574 } else if (boxObj.style.display == "none") {
575 // Box is closed, so open it
576 openBox(boxObj, buttonObj);
577 } else if (boxObj.style.display == "block") {
578 // Box is opened, so close it
579 closeBox(boxObj, buttonObj);
584 * Opens a collapseable box.
586 * @param boxObj Collapseable box
587 * @param buttonObj Button controlling box
589 function openBox(boxObj, buttonObj) {
590 if (boxObj == null || buttonObj == null) {
591 // Box or button not found
593 // Change 'display' CSS property of box
594 boxObj.style.display = "block";
596 // Change text of button
597 if (boxObj.style.display == "block") {
598 buttonObj.src = "images/button_minus.gif";
604 * Closes a collapseable box.
606 * @param boxObj Collapseable box
607 * @param buttonObj Button controlling box
609 function closeBox(boxObj, buttonObj) {
610 if (boxObj == null || buttonObj == null) {
611 // Box or button not found
613 // Change 'display' CSS property of box
614 boxObj.style.display = "none";
616 // Change text of button
617 if (boxObj.style.display == "none") {
618 buttonObj.src = "images/button_plus.gif";
623 function switchStateForAll(buttonObj, boxList) {
624 if (buttonObj == null) {
626 } else if (buttonObj.value == "+") {
629 buttonObj.value = "-";
630 } else if (buttonObj.value == "-") {
632 collapseAll(boxList);
633 buttonObj.value = "+";
638 * Closes all boxes in a given list.
640 * @param boxList Array of box IDs
642 function collapseAll(boxList) {
644 for (idx = 0; idx < boxList.length; idx++) {
645 var boxObj = getElementObject(boxList[idx]);
646 var buttonObj = getElementObject(button_prefix + boxList[idx]);
647 closeBox(boxObj, buttonObj);
652 * Open all boxes in a given list.
654 * @param boxList Array of box IDs
656 function expandAll(boxList) {
658 for (idx = 0; idx < boxList.length; idx++) {
659 var boxObj = getElementObject(boxList[idx]);
660 var buttonObj = getElementObject(button_prefix + boxList[idx]);
661 openBox(boxObj, buttonObj);
666 * Update the message presented in the title of the html page.
667 * - If the documentation was splited by namespace we present something like: "Documentation for namespace 'ns'"
668 * - If the documentation was splited by location we present somehing like: "Documentation for 'Schema.xsd'"
669 * - If no split we always present: "Documentation for 'MainSchema.xsd'"
671 function updatePageTitle(message) {
672 top.document.title = message;
678 * Finds an HTML element by its ID and makes it floatable over the normal content.
680 * @param x_displacement The difference in pixels to the right side of the window from
681 * the left side of the element.
682 * @param y_displacement The difference in pixels to the right side of the window from
683 * the top of the element.
685 function findAndFloat(id, x_displacement, y_displacement){
687 var element = getElementObject(id);
689 window[id + "_obj"] = element;
691 if(document.layers) {
692 element.style = element;
695 element.current_y = y_displacement;
696 element.first_time = true;
698 element.floatElement = function(){
699 // It may be closed by an user action.
701 // Target X and Y coordinates.
704 var myWidth = 0, myHeight = 0;
705 if( typeof( window.innerWidth ) == 'number' ) {
707 myWidth = window.innerWidth;
708 myHeight = window.innerHeight;
709 } else if( document.documentElement && ( document.documentElement.clientWidth || document.documentElement.clientHeight ) ) {
710 //IE 6+ in 'standards compliant mode'
711 myWidth = document.documentElement.clientWidth;
712 myHeight = document.documentElement.clientHeight;
713 } else if( document.body && ( document.body.clientWidth || document.body.clientHeight ) ) {
715 myWidth = document.body.clientWidth;
716 myHeight = document.body.clientHeight;
720 x = myWidth - x_displacement;
722 var ns = (navigator.appName.indexOf("Netscape") != -1);
723 y = ns ? pageYOffset : document.documentElement && document.documentElement.scrollTop ?
724 document.documentElement.scrollTop : document.body.scrollTop;
725 y = y + y_displacement;
727 // The current y is the current coordinate of the floating element.
728 // This should be at the limit the y target coordinate.
729 this.current_y += (y - this.current_y)/1.25;
731 // Add the pixels constant after the values
732 // and move the element.
733 var px = document.layers ? "" : "px";
734 this.style.left = x + px;
735 this.style.top = this.current_y + px;
737 setTimeout(this.id + "_obj.floatElement()", 100);
740 element.floatElement();
745 * Finds an HTML element by its ID and makes it floatable over the normal content.
747 * @param x_displacement The difference in pixels to the right side of the window from
748 * the left side of the element.
749 * @param y_displacement The difference in pixels to the right side of the window from
750 * the top of the element.
752 function selectTOCGroupBy(id){
753 var selectIds = new Array('toc_group_by_namespace', 'toc_group_by_location', 'toc_group_by_component_type');
754 // Make all the tabs invisible.
755 for (i = 0; i < 3; i++){
756 var tab = getElementObject(selectIds[i]);
757 tab.style.display = 'none';
759 var selTab = getElementObject(id);
760 selTab.style.display = 'block';
766 <div id="global_controls" class="globalControls" style="position:absolute;right:0;">
769 <td class="rt_cornerTopLeft"></td>
770 <td class="rt_lineTop"></td>
771 <td class="rt_cornerTopRight"></td>
774 <td class="rt_lineLeft"></td>
775 <td class="rt_content">
779 <td><span><input type="checkbox" value="-" checked="checked"
780 onclick="switchStateForAll(this, annotationBoxes);"
781 class="control" /></span><span class="globalControlName">Annotations</span></td>
784 <td><span><input type="checkbox" value="-" checked="checked"
785 onclick="switchStateForAll(this, attributesBoxes);"
786 class="control" /></span><span class="globalControlName">Attributes </span></td>
789 <td><span><input type="checkbox" value="-" checked="checked"
790 onclick="switchStateForAll(this, diagramBoxes);"
791 class="control" /></span><span class="globalControlName">Diagrams</span></td>
794 <td><span><input type="checkbox" value="-" checked="checked"
795 onclick="switchStateForAll(this, instanceBoxes);"
796 class="control" /></span><span class="globalControlName">Instances</span></td>
799 <td><span><input type="checkbox" value="-" checked="checked"
800 onclick="switchStateForAll(this, propertiesBoxes);"
801 class="control" /></span><span class="globalControlName">Properties </span></td>
804 <td><span><input type="checkbox" value="-" checked="checked"
805 onclick="switchStateForAll(this, sourceBoxes);"
806 class="control" /></span><span class="globalControlName">Source</span></td>
809 <td><span><input type="checkbox" value="-" checked="checked"
810 onclick="switchStateForAll(this, usedByBoxes);"
811 class="control" /></span><span class="globalControlName">Used by </span></td>
814 <div align="right"><span><input type="button"
815 onclick="getElementObject('global_controls').style.display = 'none';"
816 value="Close" /></span></div>
818 <td class="rt_lineRight"></td>
821 <td class="rt_cornerBottomLeft"></td>
822 <td class="rt_lineBottom"></td>
823 <td class="rt_cornerBottomRight"></td>
826 </div><a id="id1"></a><div class="componentTitle">Imported schema <span class="qname">vamsas.xsd</span></div>
829 <td class="rt_cornerTopLeft"></td>
830 <td class="rt_lineTop"></td>
831 <td class="rt_cornerTopRight"></td>
834 <td class="rt_lineLeft"></td>
835 <td class="rt_content">
836 <table class="component">
839 <td class="firstColumn"><b>Namespace</b></td>
840 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
843 <td class="firstColumn">
844 <div class="floatLeft"><b>Annotations</b></div>
845 <div class="floatRight"><input id="button_annotations_id1" type="image" src="images/button_minus.gif"
847 onclick="switchState('annotations_id1');"
848 class="control" /></div>
851 <div id="annotations_id1" style="display:block">
852 <div class="annotation">
853 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
854 class="preWrapContainer">
856 <td width="100%"><pre><span class="tokenText">Vorba ID - Vamsas Object Request Broker Address ID (name needs to be</span><span class="tokenIndent">
857 </span><span class="tokenText">worked on): Suggest it could be of the form documentRoot/datasetName/SequenceUID for a</span><span class="tokenIndent">
858 </span><span class="tokenText">dataset sequence. Alignment sequence: documentRoot/datasetName/AlignmentId/SequenceUID</span><span class="tokenIndent">
859 </span><span class="tokenText">for an aligned form of a dataset sequence</span></pre></td>
863 <div class="annotation">
864 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
865 class="preWrapContainer">
867 <td width="100%"><pre><span class="tokenText">Properties. Generally, these are mutable so an application should check</span><span class="tokenIndent">
868 </span><span class="tokenText">them each time. This may change depending on the context of the property</span></pre></td>
876 <td class="firstColumn">
877 <div class="floatLeft"><b>Properties</b></div>
878 <div class="floatRight"><input id="button_properties_id1" type="image" src="images/button_minus.gif" value="-"
879 onclick="switchState('properties_id1');"
880 class="control" /></div>
883 <div id="properties_id1" style="display:block">
884 <table class="propertiesTable">
886 <td class="firstColumn">attribute form default:
889 <td><b>unqualified</b></td>
892 <td class="firstColumn">element form default:
895 <td><b>qualified</b></td>
902 <td class="firstColumn"><b>Schema location</b></td>
903 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
908 <td class="rt_lineRight"></td>
911 <td class="rt_cornerBottomLeft"></td>
912 <td class="rt_lineBottom"></td>
913 <td class="rt_cornerBottomRight"></td>
915 </table><a id="id5"></a><div class="componentTitle">Element <span class="qname">vamsas:Provenance</span></div>
918 <td class="rt_cornerTopLeft"></td>
919 <td class="rt_lineTop"></td>
920 <td class="rt_cornerTopRight"></td>
923 <td class="rt_lineLeft"></td>
924 <td class="rt_content">
925 <table class="component">
928 <td class="firstColumn"><b>Namespace</b></td>
929 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
932 <td class="firstColumn">
933 <div class="floatLeft"><b>Diagram</b></div>
934 <div class="floatRight"><input id="button_diagram_id5" type="image" src="images/button_minus.gif" value="-"
935 onclick="switchState('diagram_id5');"
936 class="control" /></div>
939 <div id="diagram_id5" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html23.jpeg"
940 usemap="#vamsasDocument_46_html23" /><map name="vamsasDocument_46_html23" id="vamsasDocument_46_html23">
941 <area alt="vamsasDocument1.tmp#id6" href="vamsasDocument1.html#id6"
942 coords="202,11,261,49" /></map></div>
946 <td class="firstColumn">
947 <div class="floatLeft"><b>Properties</b></div>
948 <div class="floatRight"><input id="button_properties_id5" type="image" src="images/button_minus.gif" value="-"
949 onclick="switchState('properties_id5');"
950 class="control" /></div>
953 <div id="properties_id5" style="display:block">
954 <table class="propertiesTable">
956 <td class="firstColumn">content:
959 <td><b>complex</b></td>
966 <td class="firstColumn">
967 <div class="floatLeft"><b>Used by</b></div>
968 <div class="floatRight"><input id="button_usedBy_id5" type="image" src="images/button_minus.gif" value="-"
969 onclick="switchState('usedBy_id5');"
970 class="control" /></div>
973 <div id="usedBy_id5" style="display:block">
974 <table class="usedByTable">
976 <td class="firstColumn">Elements </td>
977 <td><b><a href="vamsasDocument1.html#id50" target="mainFrame"
978 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
979 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>, <b><a href="vamsasDocument1.html#id99" target="mainFrame"
980 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
981 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b>, <b><a href="vamsasDocument1.html#id100" target="mainFrame"
982 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
983 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b>, <b><a href="vamsasDocument1.html#id104" target="mainFrame"
984 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
985 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence/vamsas:AlignmentSequenceAnnotation</a></b>, <b><a href="vamsasDocument1.html#id79" target="mainFrame"
986 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
987 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:DataSetAnnotations</a></b>, <b><a href="vamsasDocument1.html#id75" target="mainFrame"
988 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
989 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:sequenceMapping</a></b>, <b><a href="vamsasDocument1.html#id29" target="mainFrame"
990 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
991 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>, <b><a href="vamsasDocument0.html#id2" target="mainFrame"
992 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasDocument"
993 onclick="updatePageTitle('Schema documentation for vamsasDocument.xsd')">vdoc:VamsasDocument</a></b></td>
1000 <td class="firstColumn"><b>Model</b></td>
1001 <td><b><a href="vamsasDocument1.html#id6" target="mainFrame"
1002 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1003 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry+</a></b></td>
1006 <td class="firstColumn"><b>Children</b></td>
1007 <td><b><a href="vamsasDocument1.html#id6" target="mainFrame"
1008 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1009 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry</a></b></td>
1012 <td class="firstColumn">
1013 <div class="floatLeft"><b>Instance</b></div>
1014 <div class="floatRight"><input id="button_instance_id5" type="image" src="images/button_minus.gif" value="-"
1015 onclick="switchState('instance_id5');"
1016 class="control" /></div>
1019 <div id="instance_id5" style="display:block">
1020 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1021 class="preWrapContainer">
1023 <td width="100%"><pre><span class="tokenElement"><vamsas:Provenance</span><span class="tokenElement">></span><span class="tokenIndent">
1024 </span><span class="tokenElement"><vamsas:entry</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:entry></span><span class="tokenIndent">
1025 </span><span class="tokenElement"></vamsas:Provenance></span></pre></td>
1032 <td class="firstColumn">
1033 <div class="floatLeft"><b>Source</b></div>
1034 <div class="floatRight"><input id="button_source_id5" type="image" src="images/button_minus.gif" value="-"
1035 onclick="switchState('source_id5');"
1036 class="control" /></div>
1039 <div id="source_id5" style="display:block">
1040 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1041 class="preWrapContainer">
1043 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Provenance"</span><span class="tokenElement">></span><span class="tokenIndent">
1044 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
1045 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1046 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Defines the origin and series of operations applied directly to the object that references it.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1047 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1048 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
1049 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"entry"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1050 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
1051 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
1052 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"User"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1053 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1054 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Who</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1055 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1056 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1057 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"App"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1058 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1059 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">With which application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1060 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1061 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1062 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Action"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1063 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1064 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Did what</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1065 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1066 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1067 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Date"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:dateTime"</span><span class="tokenElement">></span><span class="tokenIndent">
1068 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1069 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">When</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1070 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1071 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1072 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1073 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1074 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">additional information</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1075 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1076 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1077 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:param"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1078 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1079 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">parameter for the action</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1080 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1081 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1082 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:input"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1083 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1084 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">bioinformatic objects input to action</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1085 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1086 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1087 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
1088 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
1089 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1090 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1091 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1092 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
1093 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
1094 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1095 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
1096 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
1097 </span><span class="tokenElement"></xs:element></span></pre></td>
1104 <td class="firstColumn"><b>Schema location</b></td>
1105 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
1110 <td class="rt_lineRight"></td>
1113 <td class="rt_cornerBottomLeft"></td>
1114 <td class="rt_lineBottom"></td>
1115 <td class="rt_cornerBottomRight"></td>
1117 </table><a id="id6"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id5" target="mainFrame"
1118 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1119 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>/vamsas:entry</span></div>
1122 <td class="rt_cornerTopLeft"></td>
1123 <td class="rt_lineTop"></td>
1124 <td class="rt_cornerTopRight"></td>
1127 <td class="rt_lineLeft"></td>
1128 <td class="rt_content">
1129 <table class="component">
1132 <td class="firstColumn"><b>Namespace</b></td>
1133 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
1136 <td class="firstColumn">
1137 <div class="floatLeft"><b>Diagram</b></div>
1138 <div class="floatRight"><input id="button_diagram_id6" type="image" src="images/button_minus.gif" value="-"
1139 onclick="switchState('diagram_id6');"
1140 class="control" /></div>
1142 <td class="diagram">
1143 <div id="diagram_id6" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html6.jpeg"
1144 usemap="#vamsasDocument_46_html6" /><map name="vamsasDocument_46_html6" id="vamsasDocument_46_html6">
1145 <area alt="vamsasDocument1.tmp#id27" href="vamsasDocument1.html#id27"
1146 coords="99,43,182,85" />
1147 <area alt="vamsasDocument1.tmp#id7" href="vamsasDocument1.html#id7"
1148 coords="174,105,269,147" />
1149 <area alt="vamsasDocument1.tmp#id8" href="vamsasDocument1.html#id8"
1150 coords="174,157,269,199" />
1151 <area alt="vamsasDocument1.tmp#id9" href="vamsasDocument1.html#id9"
1152 coords="174,209,269,251" />
1153 <area alt="vamsasDocument1.tmp#id10" href="vamsasDocument1.html#id10"
1154 coords="174,261,285,303" />
1155 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
1156 coords="174,313,336,369" />
1157 <area alt="vamsasDocument1.tmp#id14" href="vamsasDocument1.html#id14"
1158 coords="174,379,336,435" />
1159 <area alt="vamsasDocument1.tmp#id17" href="vamsasDocument1.html#id17"
1160 coords="174,445,387,501" /></map></div>
1164 <td class="firstColumn">
1165 <div class="floatLeft"><b>Properties</b></div>
1166 <div class="floatRight"><input id="button_properties_id6" type="image" src="images/button_minus.gif" value="-"
1167 onclick="switchState('properties_id6');"
1168 class="control" /></div>
1171 <div id="properties_id6" style="display:block">
1172 <table class="propertiesTable">
1174 <td class="firstColumn">content:
1177 <td><b>complex</b></td>
1180 <td class="firstColumn">maxOccurs:
1183 <td><b>unbounded</b></td>
1190 <td class="firstColumn"><b>Model</b></td>
1191 <td><b><a href="vamsasDocument1.html#id7" target="mainFrame"
1192 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1193 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:User</a></b> , <b><a href="vamsasDocument1.html#id8" target="mainFrame"
1194 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1195 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:App</a></b> , <b><a href="vamsasDocument1.html#id9" target="mainFrame"
1196 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1197 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Action</a></b> , <b><a href="vamsasDocument1.html#id10" target="mainFrame"
1198 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1199 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Date</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
1200 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1201 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id14" target="mainFrame"
1202 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1203 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:param*</a></b> , <b><a href="vamsasDocument1.html#id17" target="mainFrame"
1204 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1205 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input*</a></b></td>
1208 <td class="firstColumn"><b>Children</b></td>
1209 <td><b><a href="vamsasDocument1.html#id9" target="mainFrame"
1210 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1211 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Action</a></b>, <b><a href="vamsasDocument1.html#id8" target="mainFrame"
1212 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1213 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:App</a></b>, <b><a href="vamsasDocument1.html#id10" target="mainFrame"
1214 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1215 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Date</a></b>, <b><a href="vamsasDocument1.html#id7" target="mainFrame"
1216 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1217 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:User</a></b>, <b><a href="vamsasDocument1.html#id17" target="mainFrame"
1218 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1219 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input</a></b>, <b><a href="vamsasDocument1.html#id14" target="mainFrame"
1220 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1221 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:param</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
1222 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1223 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b></td>
1226 <td class="firstColumn">
1227 <div class="floatLeft"><b>Instance</b></div>
1228 <div class="floatRight"><input id="button_instance_id6" type="image" src="images/button_minus.gif" value="-"
1229 onclick="switchState('instance_id6');"
1230 class="control" /></div>
1233 <div id="instance_id6" style="display:block">
1234 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1235 class="preWrapContainer">
1237 <td width="100%"><pre><span class="tokenElement"><vamsas:entry</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
1238 </span><span class="tokenElement"><vamsas:User</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:User></span><span class="tokenIndent">
1239 </span><span class="tokenElement"><vamsas:App</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:App></span><span class="tokenIndent">
1240 </span><span class="tokenElement"><vamsas:Action</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:Action></span><span class="tokenIndent">
1241 </span><span class="tokenElement"><vamsas:Date</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:Date></span><span class="tokenIndent">
1242 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
1243 </span><span class="tokenElement"><vamsas:param</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:param></span><span class="tokenIndent">
1244 </span><span class="tokenElement"><vamsas:input</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">objRef=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:input></span><span class="tokenIndent">
1245 </span><span class="tokenElement"></vamsas:entry></span></pre></td>
1252 <td class="firstColumn">
1253 <div class="floatLeft"><b>Attributes</b></div>
1254 <div class="floatRight"><input id="button_attributes_id6" type="image" src="images/button_minus.gif" value="-"
1255 onclick="switchState('attributes_id6');"
1256 class="control" /></div>
1259 <div id="attributes_id6" style="display:block">
1260 <table class="attributesTable">
1272 <td class="firstColumn"><b><a href="vamsasDocument1.html#id27" target="mainFrame" title="No namespace"
1273 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
1274 <td><b>xs:ID</b></td>
1279 <div class="annotation">
1280 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1281 class="preWrapContainer">
1283 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
1294 <td class="firstColumn">
1295 <div class="floatLeft"><b>Source</b></div>
1296 <div class="floatRight"><input id="button_source_id6" type="image" src="images/button_minus.gif" value="-"
1297 onclick="switchState('source_id6');"
1298 class="control" /></div>
1301 <div id="source_id6" style="display:block">
1302 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1303 class="preWrapContainer">
1305 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"entry"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1306 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
1307 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
1308 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"User"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1309 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1310 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Who</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1311 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1312 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1313 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"App"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1314 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1315 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">With which application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1316 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1317 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1318 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Action"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1319 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1320 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Did what</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1321 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1322 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1323 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Date"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:dateTime"</span><span class="tokenElement">></span><span class="tokenIndent">
1324 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1325 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">When</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1326 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1327 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1328 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1329 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1330 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">additional information</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1331 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1332 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1333 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:param"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1334 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1335 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">parameter for the action</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1336 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1337 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1338 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:input"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
1339 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1340 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">bioinformatic objects input to action</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1341 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1342 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
1343 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
1344 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
1345 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1346 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1347 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1348 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
1349 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
1350 </span><span class="tokenElement"></xs:element></span></pre></td>
1357 <td class="firstColumn"><b>Schema location</b></td>
1358 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
1363 <td class="rt_lineRight"></td>
1366 <td class="rt_cornerBottomLeft"></td>
1367 <td class="rt_lineBottom"></td>
1368 <td class="rt_cornerBottomRight"></td>
1370 </table><a id="id7"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id6" target="mainFrame"
1371 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1372 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry</a></b>/<b><a href="vamsasDocument1.html#id5" target="mainFrame"
1373 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1374 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>/vamsas:User</span></div>
1377 <td class="rt_cornerTopLeft"></td>
1378 <td class="rt_lineTop"></td>
1379 <td class="rt_cornerTopRight"></td>
1382 <td class="rt_lineLeft"></td>
1383 <td class="rt_content">
1384 <table class="component">
1387 <td class="firstColumn"><b>Namespace</b></td>
1388 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
1391 <td class="firstColumn">
1392 <div class="floatLeft"><b>Annotations</b></div>
1393 <div class="floatRight"><input id="button_annotations_id7" type="image" src="images/button_minus.gif"
1395 onclick="switchState('annotations_id7');"
1396 class="control" /></div>
1399 <div id="annotations_id7" style="display:block">
1400 <div class="annotation">
1401 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1402 class="preWrapContainer">
1404 <td width="100%"><pre><span class="tokenText">Who</span></pre></td>
1412 <td class="firstColumn">
1413 <div class="floatLeft"><b>Diagram</b></div>
1414 <div class="floatRight"><input id="button_diagram_id7" type="image" src="images/button_minus.gif" value="-"
1415 onclick="switchState('diagram_id7');"
1416 class="control" /></div>
1418 <td class="diagram">
1419 <div id="diagram_id7" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html45.jpeg" /></div>
1423 <td class="firstColumn"><b>Type</b></td>
1424 <td><b>xs:string</b></td>
1427 <td class="firstColumn">
1428 <div class="floatLeft"><b>Properties</b></div>
1429 <div class="floatRight"><input id="button_properties_id7" type="image" src="images/button_minus.gif" value="-"
1430 onclick="switchState('properties_id7');"
1431 class="control" /></div>
1434 <div id="properties_id7" style="display:block">
1435 <table class="propertiesTable">
1437 <td class="firstColumn">content:
1440 <td><b>simple</b></td>
1447 <td class="firstColumn">
1448 <div class="floatLeft"><b>Source</b></div>
1449 <div class="floatRight"><input id="button_source_id7" type="image" src="images/button_minus.gif" value="-"
1450 onclick="switchState('source_id7');"
1451 class="control" /></div>
1454 <div id="source_id7" style="display:block">
1455 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1456 class="preWrapContainer">
1458 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"User"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1459 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1460 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Who</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1461 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1462 </span><span class="tokenElement"></xs:element></span></pre></td>
1469 <td class="firstColumn"><b>Schema location</b></td>
1470 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
1475 <td class="rt_lineRight"></td>
1478 <td class="rt_cornerBottomLeft"></td>
1479 <td class="rt_lineBottom"></td>
1480 <td class="rt_cornerBottomRight"></td>
1482 </table><a id="id8"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id6" target="mainFrame"
1483 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1484 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry</a></b>/<b><a href="vamsasDocument1.html#id5" target="mainFrame"
1485 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1486 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>/vamsas:App</span></div>
1489 <td class="rt_cornerTopLeft"></td>
1490 <td class="rt_lineTop"></td>
1491 <td class="rt_cornerTopRight"></td>
1494 <td class="rt_lineLeft"></td>
1495 <td class="rt_content">
1496 <table class="component">
1499 <td class="firstColumn"><b>Namespace</b></td>
1500 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
1503 <td class="firstColumn">
1504 <div class="floatLeft"><b>Annotations</b></div>
1505 <div class="floatRight"><input id="button_annotations_id8" type="image" src="images/button_minus.gif"
1507 onclick="switchState('annotations_id8');"
1508 class="control" /></div>
1511 <div id="annotations_id8" style="display:block">
1512 <div class="annotation">
1513 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1514 class="preWrapContainer">
1516 <td width="100%"><pre><span class="tokenText">With which application</span></pre></td>
1524 <td class="firstColumn">
1525 <div class="floatLeft"><b>Diagram</b></div>
1526 <div class="floatRight"><input id="button_diagram_id8" type="image" src="images/button_minus.gif" value="-"
1527 onclick="switchState('diagram_id8');"
1528 class="control" /></div>
1530 <td class="diagram">
1531 <div id="diagram_id8" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html5.jpeg" /></div>
1535 <td class="firstColumn"><b>Type</b></td>
1536 <td><b>xs:string</b></td>
1539 <td class="firstColumn">
1540 <div class="floatLeft"><b>Properties</b></div>
1541 <div class="floatRight"><input id="button_properties_id8" type="image" src="images/button_minus.gif" value="-"
1542 onclick="switchState('properties_id8');"
1543 class="control" /></div>
1546 <div id="properties_id8" style="display:block">
1547 <table class="propertiesTable">
1549 <td class="firstColumn">content:
1552 <td><b>simple</b></td>
1559 <td class="firstColumn">
1560 <div class="floatLeft"><b>Source</b></div>
1561 <div class="floatRight"><input id="button_source_id8" type="image" src="images/button_minus.gif" value="-"
1562 onclick="switchState('source_id8');"
1563 class="control" /></div>
1566 <div id="source_id8" style="display:block">
1567 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1568 class="preWrapContainer">
1570 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"App"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1571 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1572 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">With which application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1573 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1574 </span><span class="tokenElement"></xs:element></span></pre></td>
1581 <td class="firstColumn"><b>Schema location</b></td>
1582 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
1587 <td class="rt_lineRight"></td>
1590 <td class="rt_cornerBottomLeft"></td>
1591 <td class="rt_lineBottom"></td>
1592 <td class="rt_cornerBottomRight"></td>
1594 </table><a id="id9"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id6" target="mainFrame"
1595 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1596 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry</a></b>/<b><a href="vamsasDocument1.html#id5" target="mainFrame"
1597 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1598 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>/vamsas:Action</span></div>
1601 <td class="rt_cornerTopLeft"></td>
1602 <td class="rt_lineTop"></td>
1603 <td class="rt_cornerTopRight"></td>
1606 <td class="rt_lineLeft"></td>
1607 <td class="rt_content">
1608 <table class="component">
1611 <td class="firstColumn"><b>Namespace</b></td>
1612 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
1615 <td class="firstColumn">
1616 <div class="floatLeft"><b>Annotations</b></div>
1617 <div class="floatRight"><input id="button_annotations_id9" type="image" src="images/button_minus.gif"
1619 onclick="switchState('annotations_id9');"
1620 class="control" /></div>
1623 <div id="annotations_id9" style="display:block">
1624 <div class="annotation">
1625 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1626 class="preWrapContainer">
1628 <td width="100%"><pre><span class="tokenText">Did what</span></pre></td>
1636 <td class="firstColumn">
1637 <div class="floatLeft"><b>Diagram</b></div>
1638 <div class="floatRight"><input id="button_diagram_id9" type="image" src="images/button_minus.gif" value="-"
1639 onclick="switchState('diagram_id9');"
1640 class="control" /></div>
1642 <td class="diagram">
1643 <div id="diagram_id9" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html38.jpeg" /></div>
1647 <td class="firstColumn"><b>Type</b></td>
1648 <td><b>xs:string</b></td>
1651 <td class="firstColumn">
1652 <div class="floatLeft"><b>Properties</b></div>
1653 <div class="floatRight"><input id="button_properties_id9" type="image" src="images/button_minus.gif" value="-"
1654 onclick="switchState('properties_id9');"
1655 class="control" /></div>
1658 <div id="properties_id9" style="display:block">
1659 <table class="propertiesTable">
1661 <td class="firstColumn">content:
1664 <td><b>simple</b></td>
1671 <td class="firstColumn">
1672 <div class="floatLeft"><b>Source</b></div>
1673 <div class="floatRight"><input id="button_source_id9" type="image" src="images/button_minus.gif" value="-"
1674 onclick="switchState('source_id9');"
1675 class="control" /></div>
1678 <div id="source_id9" style="display:block">
1679 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1680 class="preWrapContainer">
1682 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Action"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1683 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1684 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Did what</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1685 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1686 </span><span class="tokenElement"></xs:element></span></pre></td>
1693 <td class="firstColumn"><b>Schema location</b></td>
1694 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
1699 <td class="rt_lineRight"></td>
1702 <td class="rt_cornerBottomLeft"></td>
1703 <td class="rt_lineBottom"></td>
1704 <td class="rt_cornerBottomRight"></td>
1706 </table><a id="id10"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id6" target="mainFrame"
1707 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1708 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry</a></b>/<b><a href="vamsasDocument1.html#id5" target="mainFrame"
1709 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1710 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>/vamsas:Date</span></div>
1713 <td class="rt_cornerTopLeft"></td>
1714 <td class="rt_lineTop"></td>
1715 <td class="rt_cornerTopRight"></td>
1718 <td class="rt_lineLeft"></td>
1719 <td class="rt_content">
1720 <table class="component">
1723 <td class="firstColumn"><b>Namespace</b></td>
1724 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
1727 <td class="firstColumn">
1728 <div class="floatLeft"><b>Annotations</b></div>
1729 <div class="floatRight"><input id="button_annotations_id10" type="image" src="images/button_minus.gif"
1731 onclick="switchState('annotations_id10');"
1732 class="control" /></div>
1735 <div id="annotations_id10" style="display:block">
1736 <div class="annotation">
1737 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1738 class="preWrapContainer">
1740 <td width="100%"><pre><span class="tokenText">When</span></pre></td>
1748 <td class="firstColumn">
1749 <div class="floatLeft"><b>Diagram</b></div>
1750 <div class="floatRight"><input id="button_diagram_id10" type="image" src="images/button_minus.gif" value="-"
1751 onclick="switchState('diagram_id10');"
1752 class="control" /></div>
1754 <td class="diagram">
1755 <div id="diagram_id10" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html44.jpeg" /></div>
1759 <td class="firstColumn"><b>Type</b></td>
1760 <td><b>xs:dateTime</b></td>
1763 <td class="firstColumn">
1764 <div class="floatLeft"><b>Properties</b></div>
1765 <div class="floatRight"><input id="button_properties_id10" type="image" src="images/button_minus.gif"
1767 onclick="switchState('properties_id10');"
1768 class="control" /></div>
1771 <div id="properties_id10" style="display:block">
1772 <table class="propertiesTable">
1774 <td class="firstColumn">content:
1777 <td><b>simple</b></td>
1784 <td class="firstColumn">
1785 <div class="floatLeft"><b>Source</b></div>
1786 <div class="floatRight"><input id="button_source_id10" type="image" src="images/button_minus.gif" value="-"
1787 onclick="switchState('source_id10');"
1788 class="control" /></div>
1791 <div id="source_id10" style="display:block">
1792 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1793 class="preWrapContainer">
1795 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Date"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:dateTime"</span><span class="tokenElement">></span><span class="tokenIndent">
1796 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1797 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">When</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1798 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1799 </span><span class="tokenElement"></xs:element></span></pre></td>
1806 <td class="firstColumn"><b>Schema location</b></td>
1807 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
1812 <td class="rt_lineRight"></td>
1815 <td class="rt_cornerBottomLeft"></td>
1816 <td class="rt_lineBottom"></td>
1817 <td class="rt_cornerBottomRight"></td>
1819 </table><a id="id11"></a><div class="componentTitle">Element <span class="qname">vamsas:property</span></div>
1822 <td class="rt_cornerTopLeft"></td>
1823 <td class="rt_lineTop"></td>
1824 <td class="rt_cornerTopRight"></td>
1827 <td class="rt_lineLeft"></td>
1828 <td class="rt_content">
1829 <table class="component">
1832 <td class="firstColumn"><b>Namespace</b></td>
1833 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
1836 <td class="firstColumn">
1837 <div class="floatLeft"><b>Diagram</b></div>
1838 <div class="floatRight"><input id="button_diagram_id11" type="image" src="images/button_minus.gif" value="-"
1839 onclick="switchState('diagram_id11');"
1840 class="control" /></div>
1842 <td class="diagram">
1843 <div id="diagram_id11" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html60.jpeg"
1844 usemap="#vamsasDocument_46_html60" /><map name="vamsasDocument_46_html60" id="vamsasDocument_46_html60">
1845 <area alt="vamsasDocument1.tmp#id12" href="vamsasDocument1.html#id12"
1846 coords="202,88,297,130" />
1847 <area alt="vamsasDocument1.tmp#id13" href="vamsasDocument1.html#id13"
1848 coords="202,140,297,182" /></map></div>
1852 <td class="firstColumn"><b>Type</b></td>
1853 <td>extension of <b>xs:string</b></td>
1856 <td class="firstColumn">
1857 <div class="floatLeft"><b>Properties</b></div>
1858 <div class="floatRight"><input id="button_properties_id11" type="image" src="images/button_minus.gif"
1860 onclick="switchState('properties_id11');"
1861 class="control" /></div>
1864 <div id="properties_id11" style="display:block">
1865 <table class="propertiesTable">
1867 <td class="firstColumn">content:
1870 <td><b>complex</b></td>
1877 <td class="firstColumn">
1878 <div class="floatLeft"><b>Used by</b></div>
1879 <div class="floatRight"><input id="button_usedBy_id11" type="image" src="images/button_minus.gif" value="-"
1880 onclick="switchState('usedBy_id11');"
1881 class="control" /></div>
1884 <div id="usedBy_id11" style="display:block">
1885 <table class="usedByTable">
1887 <td class="firstColumn">Elements </td>
1888 <td><b><a href="vamsasDocument1.html#id99" target="mainFrame"
1889 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1890 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b>, <b><a href="vamsasDocument1.html#id100" target="mainFrame"
1891 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1892 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b>, <b><a href="vamsasDocument1.html#id103" target="mainFrame"
1893 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1894 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence</a></b>, <b><a href="vamsasDocument1.html#id104" target="mainFrame"
1895 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1896 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence/vamsas:AlignmentSequenceAnnotation</a></b>, <b><a href="vamsasDocument1.html#id79" target="mainFrame"
1897 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1898 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:DataSetAnnotations</a></b>, <b><a href="vamsasDocument1.html#id51" target="mainFrame"
1899 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1900 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence</a></b>, <b><a href="vamsasDocument1.html#id58" target="mainFrame"
1901 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1902 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef</a></b>, <b><a href="vamsasDocument1.html#id6" target="mainFrame"
1903 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1904 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance/vamsas:entry</a></b>, <b><a href="vamsasDocument1.html#id29" target="mainFrame"
1905 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1906 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>, <b><a href="vamsasDocument1.html#id36" target="mainFrame"
1907 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1908 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:treenode</a></b></td>
1911 <td class="firstColumn">Complex Types </td>
1912 <td><b><a href="vamsasDocument1.html#id52" target="mainFrame"
1913 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1914 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b>, <b><a href="vamsasDocument1.html#id37" target="mainFrame"
1915 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1916 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b>, <b><a href="vamsasDocument1.html#id80" target="mainFrame"
1917 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
1918 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
1925 <td class="firstColumn">
1926 <div class="floatLeft"><b>Attributes</b></div>
1927 <div class="floatRight"><input id="button_attributes_id11" type="image" src="images/button_minus.gif"
1929 onclick="switchState('attributes_id11');"
1930 class="control" /></div>
1933 <div id="attributes_id11" style="display:block">
1934 <table class="attributesTable">
1946 <td class="firstColumn"><b><a href="vamsasDocument1.html#id12" target="mainFrame" title="No namespace"
1947 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">name</a></b></td>
1948 <td><b>xs:string</b></td>
1953 <div class="annotation"></div>
1957 <td class="firstColumn"><b><a href="vamsasDocument1.html#id13" target="mainFrame" title="No namespace"
1958 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
1959 <td><b>xs:string</b></td>
1964 <div class="annotation">
1965 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1966 class="preWrapContainer">
1968 <td width="100%"><pre><span class="tokenText">The type specifies how the property will be parsed.</span><span class="tokenIndent">
1969 </span><span class="tokenText">Empty property strings are allowed, and can be used to prototype the</span><span class="tokenIndent">
1970 </span><span class="tokenText">input to a document. TODO: specify allowed types</span></pre></td>
1981 <td class="firstColumn">
1982 <div class="floatLeft"><b>Source</b></div>
1983 <div class="floatRight"><input id="button_source_id11" type="image" src="images/button_minus.gif" value="-"
1984 onclick="switchState('source_id11');"
1985 class="control" /></div>
1988 <div id="source_id11" style="display:block">
1989 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
1990 class="preWrapContainer">
1992 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"property"</span><span class="tokenElement">></span><span class="tokenIndent">
1993 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
1994 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
1995 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
1996 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Named and typed property string</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
1997 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
1998 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
1999 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
2000 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
2001 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2002 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">The type specifies how the property will be parsed. Empty property strings are allowed, and can be used to prototype the input to a document. TODO: specify allowed types</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2003 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2004 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
2005 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
2006 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
2007 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
2008 </span><span class="tokenElement"></xs:element></span></pre></td>
2015 <td class="firstColumn"><b>Schema location</b></td>
2016 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
2021 <td class="rt_lineRight"></td>
2024 <td class="rt_cornerBottomLeft"></td>
2025 <td class="rt_lineBottom"></td>
2026 <td class="rt_cornerBottomRight"></td>
2028 </table><a id="id14"></a><div class="componentTitle">Element <span class="qname">vamsas:param</span></div>
2031 <td class="rt_cornerTopLeft"></td>
2032 <td class="rt_lineTop"></td>
2033 <td class="rt_cornerTopRight"></td>
2036 <td class="rt_lineLeft"></td>
2037 <td class="rt_content">
2038 <table class="component">
2041 <td class="firstColumn"><b>Namespace</b></td>
2042 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
2045 <td class="firstColumn">
2046 <div class="floatLeft"><b>Diagram</b></div>
2047 <div class="floatRight"><input id="button_diagram_id14" type="image" src="images/button_minus.gif" value="-"
2048 onclick="switchState('diagram_id14');"
2049 class="control" /></div>
2051 <td class="diagram">
2052 <div id="diagram_id14" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html16.jpeg"
2053 usemap="#vamsasDocument_46_html16" /><map name="vamsasDocument_46_html16" id="vamsasDocument_46_html16">
2054 <area alt="vamsasDocument1.tmp#id15" href="vamsasDocument1.html#id15"
2055 coords="202,88,297,130" />
2056 <area alt="vamsasDocument1.tmp#id16" href="vamsasDocument1.html#id16"
2057 coords="202,140,297,182" /></map></div>
2061 <td class="firstColumn"><b>Type</b></td>
2062 <td>extension of <b>xs:string</b></td>
2065 <td class="firstColumn">
2066 <div class="floatLeft"><b>Properties</b></div>
2067 <div class="floatRight"><input id="button_properties_id14" type="image" src="images/button_minus.gif"
2069 onclick="switchState('properties_id14');"
2070 class="control" /></div>
2073 <div id="properties_id14" style="display:block">
2074 <table class="propertiesTable">
2076 <td class="firstColumn">content:
2079 <td><b>complex</b></td>
2086 <td class="firstColumn">
2087 <div class="floatLeft"><b>Used by</b></div>
2088 <div class="floatRight"><input id="button_usedBy_id14" type="image" src="images/button_minus.gif" value="-"
2089 onclick="switchState('usedBy_id14');"
2090 class="control" /></div>
2093 <div id="usedBy_id14" style="display:block">
2094 <table class="usedByTable">
2096 <td class="firstColumn">Element </td>
2097 <td><b><a href="vamsasDocument1.html#id6" target="mainFrame"
2098 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2099 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance/vamsas:entry</a></b></td>
2106 <td class="firstColumn">
2107 <div class="floatLeft"><b>Attributes</b></div>
2108 <div class="floatRight"><input id="button_attributes_id14" type="image" src="images/button_minus.gif"
2110 onclick="switchState('attributes_id14');"
2111 class="control" /></div>
2114 <div id="attributes_id14" style="display:block">
2115 <table class="attributesTable">
2127 <td class="firstColumn"><b><a href="vamsasDocument1.html#id15" target="mainFrame" title="No namespace"
2128 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">name</a></b></td>
2129 <td><b>xs:string</b></td>
2134 <div class="annotation"></div>
2138 <td class="firstColumn"><b><a href="vamsasDocument1.html#id16" target="mainFrame" title="No namespace"
2139 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
2140 <td><b>xs:string</b></td>
2145 <div class="annotation">
2146 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2147 class="preWrapContainer">
2149 <td width="100%"><pre><span class="tokenText">The type specifies how the property will be parsed.</span><span class="tokenIndent">
2150 </span><span class="tokenText">Empty property strings are allowed, and can be used to prototype the</span><span class="tokenIndent">
2151 </span><span class="tokenText">input to a document. TODO: specify allowed types</span></pre></td>
2162 <td class="firstColumn">
2163 <div class="floatLeft"><b>Source</b></div>
2164 <div class="floatRight"><input id="button_source_id14" type="image" src="images/button_minus.gif" value="-"
2165 onclick="switchState('source_id14');"
2166 class="control" /></div>
2169 <div id="source_id14" style="display:block">
2170 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2171 class="preWrapContainer">
2173 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"param"</span><span class="tokenElement">></span><span class="tokenIndent">
2174 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
2175 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2176 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Specifies a named and typed value used to perform some data transformation.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2177 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">LATER: experiment with xml validation of property set prototypes for services</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2178 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2179 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
2180 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2181 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Named and typed property string</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2182 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2183 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
2184 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
2185 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
2186 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2187 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">The type specifies how the property will be parsed. Empty property strings are allowed, and can be used to prototype the input to a document. TODO: specify allowed types</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2188 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2189 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
2190 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
2191 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
2192 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
2193 </span><span class="tokenElement"></xs:element></span></pre></td>
2200 <td class="firstColumn"><b>Schema location</b></td>
2201 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
2206 <td class="rt_lineRight"></td>
2209 <td class="rt_cornerBottomLeft"></td>
2210 <td class="rt_lineBottom"></td>
2211 <td class="rt_cornerBottomRight"></td>
2213 </table><a id="id17"></a><div class="componentTitle">Element <span class="qname">vamsas:input</span></div>
2216 <td class="rt_cornerTopLeft"></td>
2217 <td class="rt_lineTop"></td>
2218 <td class="rt_cornerTopRight"></td>
2221 <td class="rt_lineLeft"></td>
2222 <td class="rt_content">
2223 <table class="component">
2226 <td class="firstColumn"><b>Namespace</b></td>
2227 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
2230 <td class="firstColumn">
2231 <div class="floatLeft"><b>Diagram</b></div>
2232 <div class="floatRight"><input id="button_diagram_id17" type="image" src="images/button_minus.gif" value="-"
2233 onclick="switchState('diagram_id17');"
2234 class="control" /></div>
2236 <td class="diagram">
2237 <div id="diagram_id17" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html42.jpeg"
2238 usemap="#vamsasDocument_46_html42" /><map name="vamsasDocument_46_html42" id="vamsasDocument_46_html42">
2239 <area alt="vamsasDocument1.tmp#id19" href="vamsasDocument1.html#id19"
2240 coords="326,54,385,92" />
2241 <area alt="vamsasDocument1.tmp#id21" href="vamsasDocument1.html#id21"
2242 coords="326,102,385,140" />
2243 <area alt="vamsasDocument1.tmp#id18" href="vamsasDocument1.html#id18"
2244 coords="244,22,386,44" />
2245 <area alt="vamsasDocument1.tmp#id25" href="vamsasDocument1.html#id25"
2246 coords="253,193,348,235" />
2247 <area alt="vamsasDocument1.tmp#id26" href="vamsasDocument1.html#id26"
2248 coords="253,245,356,287" /></map></div>
2252 <td class="firstColumn"><b>Type</b></td>
2253 <td>extension of <b><a href="vamsasDocument1.html#id18" target="mainFrame"
2254 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2255 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b></td>
2258 <td class="firstColumn"><b>Type hierarchy</b></td>
2261 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
2262 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2263 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b></li>
2268 <td class="firstColumn">
2269 <div class="floatLeft"><b>Properties</b></div>
2270 <div class="floatRight"><input id="button_properties_id17" type="image" src="images/button_minus.gif"
2272 onclick="switchState('properties_id17');"
2273 class="control" /></div>
2276 <div id="properties_id17" style="display:block">
2277 <table class="propertiesTable">
2279 <td class="firstColumn">content:
2282 <td><b>complex</b></td>
2289 <td class="firstColumn">
2290 <div class="floatLeft"><b>Used by</b></div>
2291 <div class="floatRight"><input id="button_usedBy_id17" type="image" src="images/button_minus.gif" value="-"
2292 onclick="switchState('usedBy_id17');"
2293 class="control" /></div>
2296 <div id="usedBy_id17" style="display:block">
2297 <table class="usedByTable">
2299 <td class="firstColumn">Element </td>
2300 <td><b><a href="vamsasDocument1.html#id6" target="mainFrame"
2301 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2302 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance/vamsas:entry</a></b></td>
2309 <td class="firstColumn"><b>Model</b></td>
2310 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
2311 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2312 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
2313 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2314 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b></td>
2317 <td class="firstColumn"><b>Children</b></td>
2318 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
2319 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2320 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
2321 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2322 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b></td>
2325 <td class="firstColumn">
2326 <div class="floatLeft"><b>Instance</b></div>
2327 <div class="floatRight"><input id="button_instance_id17" type="image" src="images/button_minus.gif" value="-"
2328 onclick="switchState('instance_id17');"
2329 class="control" /></div>
2332 <div id="instance_id17" style="display:block">
2333 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2334 class="preWrapContainer">
2336 <td width="100%"><pre><span class="tokenElement"><vamsas:input</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">objRef=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
2337 </span><span class="tokenElement"><vamsas:pos</span><span class="tokenText"> </span><span class="tokenAttrName">i=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:pos></span><span class="tokenIndent">
2338 </span><span class="tokenElement"><vamsas:seg</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">inclusive=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:seg></span><span class="tokenIndent">
2339 </span><span class="tokenElement"></vamsas:input></span></pre></td>
2346 <td class="firstColumn">
2347 <div class="floatLeft"><b>Attributes</b></div>
2348 <div class="floatRight"><input id="button_attributes_id17" type="image" src="images/button_minus.gif"
2350 onclick="switchState('attributes_id17');"
2351 class="control" /></div>
2354 <div id="attributes_id17" style="display:block">
2355 <table class="attributesTable">
2367 <td class="firstColumn"><b><a href="vamsasDocument1.html#id25" target="mainFrame" title="No namespace"
2368 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">name</a></b></td>
2369 <td><b>xs:string</b></td>
2374 <div class="annotation"></div>
2378 <td class="firstColumn"><b><a href="vamsasDocument1.html#id26" target="mainFrame" title="No namespace"
2379 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">objRef</a></b></td>
2380 <td><b>xs:IDREFS</b></td>
2385 <div class="annotation">
2386 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2387 class="preWrapContainer">
2389 <td width="100%"><pre><span class="tokenText">Reference Frame for rangeType specfication</span></pre></td>
2400 <td class="firstColumn">
2401 <div class="floatLeft"><b>Source</b></div>
2402 <div class="floatRight"><input id="button_source_id17" type="image" src="images/button_minus.gif" value="-"
2403 onclick="switchState('source_id17');"
2404 class="control" /></div>
2407 <div id="source_id17" style="display:block">
2408 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2409 class="preWrapContainer">
2411 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"input"</span><span class="tokenElement">></span><span class="tokenIndent">
2412 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
2413 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2414 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Selects all or part of a collection of vamsas objects as a named input to some transformation process. Many inputs with the same name imply a group input (such as a collection of sequences)</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2415 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2416 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
2417 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
2418 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
2419 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"objRef"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
2420 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2421 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Reference Frame for rangeType specfication</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2422 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2423 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
2424 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
2425 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
2426 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
2427 </span><span class="tokenElement"></xs:element></span></pre></td>
2434 <td class="firstColumn"><b>Schema location</b></td>
2435 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
2440 <td class="rt_lineRight"></td>
2443 <td class="rt_cornerBottomLeft"></td>
2444 <td class="rt_lineBottom"></td>
2445 <td class="rt_cornerBottomRight"></td>
2447 </table><a id="id19"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id18" target="mainFrame"
2448 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2449 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b>/vamsas:pos</span></div>
2452 <td class="rt_cornerTopLeft"></td>
2453 <td class="rt_lineTop"></td>
2454 <td class="rt_cornerTopRight"></td>
2457 <td class="rt_lineLeft"></td>
2458 <td class="rt_content">
2459 <table class="component">
2462 <td class="firstColumn"><b>Namespace</b></td>
2463 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
2466 <td class="firstColumn">
2467 <div class="floatLeft"><b>Annotations</b></div>
2468 <div class="floatRight"><input id="button_annotations_id19" type="image" src="images/button_minus.gif"
2470 onclick="switchState('annotations_id19');"
2471 class="control" /></div>
2474 <div id="annotations_id19" style="display:block">
2475 <div class="annotation">
2476 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2477 class="preWrapContainer">
2479 <td width="100%"><pre><span class="tokenText">a position within the associated object's coordinate system</span></pre></td>
2487 <td class="firstColumn">
2488 <div class="floatLeft"><b>Diagram</b></div>
2489 <div class="floatRight"><input id="button_diagram_id19" type="image" src="images/button_minus.gif" value="-"
2490 onclick="switchState('diagram_id19');"
2491 class="control" /></div>
2493 <td class="diagram">
2494 <div id="diagram_id19" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html2.jpeg"
2495 usemap="#vamsasDocument_46_html2" /><map name="vamsasDocument_46_html2" id="vamsasDocument_46_html2">
2496 <area alt="vamsasDocument1.tmp#id20" href="vamsasDocument1.html#id20"
2497 coords="99,43,182,85" /></map></div>
2501 <td class="firstColumn">
2502 <div class="floatLeft"><b>Properties</b></div>
2503 <div class="floatRight"><input id="button_properties_id19" type="image" src="images/button_minus.gif"
2505 onclick="switchState('properties_id19');"
2506 class="control" /></div>
2509 <div id="properties_id19" style="display:block">
2510 <table class="propertiesTable">
2512 <td class="firstColumn">content:
2515 <td><b>complex</b></td>
2518 <td class="firstColumn">maxOccurs:
2521 <td><b>unbounded</b></td>
2528 <td class="firstColumn">
2529 <div class="floatLeft"><b>Attributes</b></div>
2530 <div class="floatRight"><input id="button_attributes_id19" type="image" src="images/button_minus.gif"
2532 onclick="switchState('attributes_id19');"
2533 class="control" /></div>
2536 <div id="attributes_id19" style="display:block">
2537 <table class="attributesTable">
2549 <td class="firstColumn"><b><a href="vamsasDocument1.html#id20" target="mainFrame" title="No namespace"
2550 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">i</a></b></td>
2551 <td><b>xs:int</b></td>
2556 <div class="annotation"></div>
2564 <td class="firstColumn">
2565 <div class="floatLeft"><b>Source</b></div>
2566 <div class="floatRight"><input id="button_source_id19" type="image" src="images/button_minus.gif" value="-"
2567 onclick="switchState('source_id19');"
2568 class="control" /></div>
2571 <div id="source_id19" style="display:block">
2572 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2573 class="preWrapContainer">
2575 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"pos"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
2576 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2577 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">a position within the associated object's coordinate system</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2578 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2579 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
2580 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"i"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
2581 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
2582 </span><span class="tokenElement"></xs:element></span></pre></td>
2589 <td class="firstColumn"><b>Schema location</b></td>
2590 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
2595 <td class="rt_lineRight"></td>
2598 <td class="rt_cornerBottomLeft"></td>
2599 <td class="rt_lineBottom"></td>
2600 <td class="rt_cornerBottomRight"></td>
2602 </table><a id="id21"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id18" target="mainFrame"
2603 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2604 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b>/vamsas:seg</span></div>
2607 <td class="rt_cornerTopLeft"></td>
2608 <td class="rt_lineTop"></td>
2609 <td class="rt_cornerTopRight"></td>
2612 <td class="rt_lineLeft"></td>
2613 <td class="rt_content">
2614 <table class="component">
2617 <td class="firstColumn"><b>Namespace</b></td>
2618 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
2621 <td class="firstColumn">
2622 <div class="floatLeft"><b>Annotations</b></div>
2623 <div class="floatRight"><input id="button_annotations_id21" type="image" src="images/button_minus.gif"
2625 onclick="switchState('annotations_id21');"
2626 class="control" /></div>
2629 <div id="annotations_id21" style="display:block">
2630 <div class="annotation">
2631 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2632 class="preWrapContainer">
2634 <td width="100%"><pre><span class="tokenText">a region from start to end, with flag for inclusivity of</span><span class="tokenIndent">
2635 </span><span class="tokenText">terminii</span></pre></td>
2643 <td class="firstColumn">
2644 <div class="floatLeft"><b>Diagram</b></div>
2645 <div class="floatRight"><input id="button_diagram_id21" type="image" src="images/button_minus.gif" value="-"
2646 onclick="switchState('diagram_id21');"
2647 class="control" /></div>
2649 <td class="diagram">
2650 <div id="diagram_id21" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html46.jpeg"
2651 usemap="#vamsasDocument_46_html46" /><map name="vamsasDocument_46_html46" id="vamsasDocument_46_html46">
2652 <area alt="vamsasDocument1.tmp#id22" href="vamsasDocument1.html#id22"
2653 coords="99,43,182,85" />
2654 <area alt="vamsasDocument1.tmp#id23" href="vamsasDocument1.html#id23"
2655 coords="99,95,182,137" />
2656 <area alt="vamsasDocument1.tmp#id24" href="vamsasDocument1.html#id24"
2657 coords="99,147,205,189" /></map></div>
2661 <td class="firstColumn">
2662 <div class="floatLeft"><b>Properties</b></div>
2663 <div class="floatRight"><input id="button_properties_id21" type="image" src="images/button_minus.gif"
2665 onclick="switchState('properties_id21');"
2666 class="control" /></div>
2669 <div id="properties_id21" style="display:block">
2670 <table class="propertiesTable">
2672 <td class="firstColumn">content:
2675 <td><b>complex</b></td>
2678 <td class="firstColumn">maxOccurs:
2681 <td><b>unbounded</b></td>
2688 <td class="firstColumn">
2689 <div class="floatLeft"><b>Attributes</b></div>
2690 <div class="floatRight"><input id="button_attributes_id21" type="image" src="images/button_minus.gif"
2692 onclick="switchState('attributes_id21');"
2693 class="control" /></div>
2696 <div id="attributes_id21" style="display:block">
2697 <table class="attributesTable">
2709 <td class="firstColumn"><b><a href="vamsasDocument1.html#id23" target="mainFrame" title="No namespace"
2710 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">end</a></b></td>
2711 <td><b>xs:int</b></td>
2716 <div class="annotation"></div>
2720 <td class="firstColumn"><b><a href="vamsasDocument1.html#id24" target="mainFrame" title="No namespace"
2721 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">inclusive</a></b></td>
2722 <td><b>xs:boolean</b></td>
2727 <div class="annotation">
2728 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2729 class="preWrapContainer">
2731 <td width="100%"><pre><span class="tokenText">when false, a consecutive range like 'start=1, end=2'</span><span class="tokenIndent">
2732 </span><span class="tokenText">means the region lying after position 1 and before position 2</span></pre></td>
2739 <td class="firstColumn"><b><a href="vamsasDocument1.html#id22" target="mainFrame" title="No namespace"
2740 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">start</a></b></td>
2741 <td><b>xs:int</b></td>
2746 <div class="annotation"></div>
2754 <td class="firstColumn">
2755 <div class="floatLeft"><b>Source</b></div>
2756 <div class="floatRight"><input id="button_source_id21" type="image" src="images/button_minus.gif" value="-"
2757 onclick="switchState('source_id21');"
2758 class="control" /></div>
2761 <div id="source_id21" style="display:block">
2762 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2763 class="preWrapContainer">
2765 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seg"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
2766 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2767 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">a region from start to end, with flag for inclusivity of terminii</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2768 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2769 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
2770 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"start"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
2771 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"end"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
2772 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"inclusive"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
2773 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
2774 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">when false, a consecutive range like 'start=1, end=2' means the region lying after position 1 and before position 2</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
2775 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
2776 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
2777 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
2778 </span><span class="tokenElement"></xs:element></span></pre></td>
2785 <td class="firstColumn"><b>Schema location</b></td>
2786 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
2791 <td class="rt_lineRight"></td>
2794 <td class="rt_cornerBottomLeft"></td>
2795 <td class="rt_lineBottom"></td>
2796 <td class="rt_cornerBottomRight"></td>
2798 </table><a id="id28"></a><div class="componentTitle">Element <span class="qname">vamsas:VAMSAS</span></div>
2801 <td class="rt_cornerTopLeft"></td>
2802 <td class="rt_lineTop"></td>
2803 <td class="rt_cornerTopRight"></td>
2806 <td class="rt_lineLeft"></td>
2807 <td class="rt_content">
2808 <table class="component">
2811 <td class="firstColumn"><b>Namespace</b></td>
2812 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
2815 <td class="firstColumn">
2816 <div class="floatLeft"><b>Annotations</b></div>
2817 <div class="floatRight"><input id="button_annotations_id28" type="image" src="images/button_minus.gif"
2819 onclick="switchState('annotations_id28');"
2820 class="control" /></div>
2823 <div id="annotations_id28" style="display:block">
2824 <div class="annotation">
2825 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2826 class="preWrapContainer">
2828 <td width="100%"><pre><span class="tokenText">contains unassociated trees and a number of analysis sets</span></pre></td>
2836 <td class="firstColumn">
2837 <div class="floatLeft"><b>Diagram</b></div>
2838 <div class="floatRight"><input id="button_diagram_id28" type="image" src="images/button_minus.gif" value="-"
2839 onclick="switchState('diagram_id28');"
2840 class="control" /></div>
2842 <td class="diagram">
2843 <div id="diagram_id28" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html36.jpeg"
2844 usemap="#vamsasDocument_46_html36" /><map name="vamsasDocument_46_html36" id="vamsasDocument_46_html36">
2845 <area alt="vamsasDocument1.tmp#id113" href="vamsasDocument1.html#id113"
2846 coords="115,43,198,85" />
2847 <area alt="vamsasDocument1.tmp#id114" href="vamsasDocument1.html#id114"
2848 coords="115,95,234,137" />
2849 <area alt="vamsasDocument1.tmp#id29" href="vamsasDocument1.html#id29"
2850 coords="190,157,282,195" />
2851 <area alt="vamsasDocument1.tmp#id50" href="vamsasDocument1.html#id50"
2852 coords="190,205,298,243" /></map></div>
2856 <td class="firstColumn">
2857 <div class="floatLeft"><b>Properties</b></div>
2858 <div class="floatRight"><input id="button_properties_id28" type="image" src="images/button_minus.gif"
2860 onclick="switchState('properties_id28');"
2861 class="control" /></div>
2864 <div id="properties_id28" style="display:block">
2865 <table class="propertiesTable">
2867 <td class="firstColumn">content:
2870 <td><b>complex</b></td>
2877 <td class="firstColumn">
2878 <div class="floatLeft"><b>Used by</b></div>
2879 <div class="floatRight"><input id="button_usedBy_id28" type="image" src="images/button_minus.gif" value="-"
2880 onclick="switchState('usedBy_id28');"
2881 class="control" /></div>
2884 <div id="usedBy_id28" style="display:block">
2885 <table class="usedByTable">
2887 <td class="firstColumn">Element </td>
2888 <td><b><a href="vamsasDocument0.html#id2" target="mainFrame"
2889 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasDocument"
2890 onclick="updatePageTitle('Schema documentation for vamsasDocument.xsd')">vdoc:VamsasDocument</a></b></td>
2897 <td class="firstColumn"><b>Model</b></td>
2898 <td><b><a href="vamsasDocument1.html#id29" target="mainFrame"
2899 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2900 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree*</a></b> , <b><a href="vamsasDocument1.html#id50" target="mainFrame"
2901 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2902 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet*</a></b></td>
2905 <td class="firstColumn"><b>Children</b></td>
2906 <td><b><a href="vamsasDocument1.html#id50" target="mainFrame"
2907 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2908 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>, <b><a href="vamsasDocument1.html#id29" target="mainFrame"
2909 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2910 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b></td>
2913 <td class="firstColumn">
2914 <div class="floatLeft"><b>Instance</b></div>
2915 <div class="floatRight"><input id="button_instance_id28" type="image" src="images/button_minus.gif" value="-"
2916 onclick="switchState('instance_id28');"
2917 class="control" /></div>
2920 <div id="instance_id28" style="display:block">
2921 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2922 class="preWrapContainer">
2924 <td width="100%"><pre><span class="tokenElement"><vamsas:VAMSAS</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
2925 </span><span class="tokenElement"><vamsas:Tree</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:Tree></span><span class="tokenIndent">
2926 </span><span class="tokenElement"><vamsas:DataSet</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:DataSet></span><span class="tokenIndent">
2927 </span><span class="tokenElement"></vamsas:VAMSAS></span></pre></td>
2934 <td class="firstColumn">
2935 <div class="floatLeft"><b>Attributes</b></div>
2936 <div class="floatRight"><input id="button_attributes_id28" type="image" src="images/button_minus.gif"
2938 onclick="switchState('attributes_id28');"
2939 class="control" /></div>
2942 <div id="attributes_id28" style="display:block">
2943 <table class="attributesTable">
2955 <td class="firstColumn"><b><a href="vamsasDocument1.html#id113" target="mainFrame" title="No namespace"
2956 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
2957 <td><b>xs:ID</b></td>
2962 <div class="annotation">
2963 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2964 class="preWrapContainer">
2966 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
2973 <td class="firstColumn"><b><a href="vamsasDocument1.html#id114" target="mainFrame" title="No namespace"
2974 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
2975 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
2976 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
2977 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
2982 <div class="annotation"></div>
2990 <td class="firstColumn">
2991 <div class="floatLeft"><b>Source</b></div>
2992 <div class="floatRight"><input id="button_source_id28" type="image" src="images/button_minus.gif" value="-"
2993 onclick="switchState('source_id28');"
2994 class="control" /></div>
2997 <div id="source_id28" style="display:block">
2998 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
2999 class="preWrapContainer">
3001 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"VAMSAS"</span><span class="tokenElement">></span><span class="tokenIndent">
3002 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3003 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">contains unassociated trees and a number of analysis sets</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3004 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3005 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
3006 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
3007 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Tree"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
3008 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:DataSet"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
3009 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
3010 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
3011 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3012 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3013 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3014 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3015 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
3016 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
3017 </span><span class="tokenElement"></xs:element></span></pre></td>
3024 <td class="firstColumn"><b>Schema location</b></td>
3025 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
3030 <td class="rt_lineRight"></td>
3033 <td class="rt_cornerBottomLeft"></td>
3034 <td class="rt_lineBottom"></td>
3035 <td class="rt_cornerBottomRight"></td>
3037 </table><a id="id29"></a><div class="componentTitle">Element <span class="qname">vamsas:Tree</span></div>
3040 <td class="rt_cornerTopLeft"></td>
3041 <td class="rt_lineTop"></td>
3042 <td class="rt_cornerTopRight"></td>
3045 <td class="rt_lineLeft"></td>
3046 <td class="rt_content">
3047 <table class="component">
3050 <td class="firstColumn"><b>Namespace</b></td>
3051 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
3054 <td class="firstColumn">
3055 <div class="floatLeft"><b>Diagram</b></div>
3056 <div class="floatRight"><input id="button_diagram_id29" type="image" src="images/button_minus.gif" value="-"
3057 onclick="switchState('diagram_id29');"
3058 class="control" /></div>
3060 <td class="diagram">
3061 <div id="diagram_id29" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html59.jpeg"
3062 usemap="#vamsasDocument_46_html59" /><map name="vamsasDocument_46_html59" id="vamsasDocument_46_html59">
3063 <area alt="vamsasDocument1.tmp#id48" href="vamsasDocument1.html#id48"
3064 coords="99,43,182,85" />
3065 <area alt="vamsasDocument1.tmp#id49" href="vamsasDocument1.html#id49"
3066 coords="99,95,218,137" />
3067 <area alt="vamsasDocument1.tmp#id30" href="vamsasDocument1.html#id30"
3068 coords="174,157,269,199" />
3069 <area alt="vamsasDocument1.tmp#id31" href="vamsasDocument1.html#id31"
3070 coords="174,209,336,265" />
3071 <area alt="vamsasDocument1.tmp#id36" href="vamsasDocument1.html#id36"
3072 coords="174,275,383,331" />
3073 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
3074 coords="174,341,336,397" />
3075 <area alt="vamsasDocument1.tmp#id5" href="vamsasDocument1.html#id5"
3076 coords="174,407,302,431" /></map></div>
3080 <td class="firstColumn">
3081 <div class="floatLeft"><b>Properties</b></div>
3082 <div class="floatRight"><input id="button_properties_id29" type="image" src="images/button_minus.gif"
3084 onclick="switchState('properties_id29');"
3085 class="control" /></div>
3088 <div id="properties_id29" style="display:block">
3089 <table class="propertiesTable">
3091 <td class="firstColumn">content:
3094 <td><b>complex</b></td>
3101 <td class="firstColumn">
3102 <div class="floatLeft"><b>Used by</b></div>
3103 <div class="floatRight"><input id="button_usedBy_id29" type="image" src="images/button_minus.gif" value="-"
3104 onclick="switchState('usedBy_id29');"
3105 class="control" /></div>
3108 <div id="usedBy_id29" style="display:block">
3109 <table class="usedByTable">
3111 <td class="firstColumn">Elements </td>
3112 <td><b><a href="vamsasDocument1.html#id50" target="mainFrame"
3113 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3114 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>, <b><a href="vamsasDocument1.html#id99" target="mainFrame"
3115 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3116 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b>, <b><a href="vamsasDocument1.html#id28" target="mainFrame"
3117 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3118 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS</a></b></td>
3125 <td class="firstColumn"><b>Model</b></td>
3126 <td><b><a href="vamsasDocument1.html#id30" target="mainFrame"
3127 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3128 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:title{0,1}</a></b> , <b><a href="vamsasDocument1.html#id31" target="mainFrame"
3129 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3130 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:newick+</a></b> , <b><a href="vamsasDocument1.html#id36" target="mainFrame"
3131 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3132 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:treenode*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
3133 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3134 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
3135 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3136 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
3139 <td class="firstColumn"><b>Children</b></td>
3140 <td><b><a href="vamsasDocument1.html#id5" target="mainFrame"
3141 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3142 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id31" target="mainFrame"
3143 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3144 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:newick</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
3145 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3146 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id30" target="mainFrame"
3147 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3148 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:title</a></b>, <b><a href="vamsasDocument1.html#id36" target="mainFrame"
3149 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3150 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:treenode</a></b></td>
3153 <td class="firstColumn">
3154 <div class="floatLeft"><b>Instance</b></div>
3155 <div class="floatRight"><input id="button_instance_id29" type="image" src="images/button_minus.gif" value="-"
3156 onclick="switchState('instance_id29');"
3157 class="control" /></div>
3160 <div id="instance_id29" style="display:block">
3161 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3162 class="preWrapContainer">
3164 <td width="100%"><pre><span class="tokenElement"><vamsas:Tree</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
3165 </span><span class="tokenElement"><vamsas:title</span><span class="tokenElement">></span><span class="tokenText">{0,1}</span><span class="tokenElement"></vamsas:title></span><span class="tokenIndent">
3166 </span><span class="tokenElement"><vamsas:newick</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">title=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:newick></span><span class="tokenIndent">
3167 </span><span class="tokenElement"><vamsas:treenode</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">nodespec=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">treeId=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:treenode></span><span class="tokenIndent">
3168 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
3169 </span><span class="tokenElement"><vamsas:Provenance</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:Provenance></span><span class="tokenIndent">
3170 </span><span class="tokenElement"></vamsas:Tree></span></pre></td>
3177 <td class="firstColumn">
3178 <div class="floatLeft"><b>Attributes</b></div>
3179 <div class="floatRight"><input id="button_attributes_id29" type="image" src="images/button_minus.gif"
3181 onclick="switchState('attributes_id29');"
3182 class="control" /></div>
3185 <div id="attributes_id29" style="display:block">
3186 <table class="attributesTable">
3198 <td class="firstColumn"><b><a href="vamsasDocument1.html#id48" target="mainFrame" title="No namespace"
3199 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
3200 <td><b>xs:ID</b></td>
3205 <div class="annotation">
3206 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3207 class="preWrapContainer">
3209 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
3216 <td class="firstColumn"><b><a href="vamsasDocument1.html#id49" target="mainFrame" title="No namespace"
3217 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
3218 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
3219 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3220 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
3225 <div class="annotation"></div>
3233 <td class="firstColumn">
3234 <div class="floatLeft"><b>Source</b></div>
3235 <div class="floatRight"><input id="button_source_id29" type="image" src="images/button_minus.gif" value="-"
3236 onclick="switchState('source_id29');"
3237 class="control" /></div>
3240 <div id="source_id29" style="display:block">
3241 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3242 class="preWrapContainer">
3244 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Tree"</span><span class="tokenElement">></span><span class="tokenIndent">
3245 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
3246 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3247 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Contains a named collection of trees</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3248 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: define way of referencing leaves of global tree for any sequence/alignment object. SUggestion 1: Each named tree leafnode has a unique id (which may be unique in combination with trees own vorba ID). Dataset sequences can be tagged with a property "vamsas:tree_leaf"</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3249 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3250 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
3251 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"title"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">/></span><span class="tokenIndent">
3252 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"newick"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
3253 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
3254 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
3255 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
3256 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"title"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
3257 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
3258 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3259 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3260 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3261 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3262 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
3263 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
3264 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
3265 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
3266 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
3267 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"treenode"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
3268 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3269 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">node identity and mapping data between tree representations and vamsas document objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3270 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3271 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
3272 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
3273 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:nodeType"</span><span class="tokenElement">></span><span class="tokenIndent">
3274 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"treeId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenElement">></span><span class="tokenIndent">
3275 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3276 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">reference to one or more trees containing the node being described.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3277 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3278 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3279 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"nodespec"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
3280 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3281 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">String uniquely identifying a particular node in the referenced tree according to the format of the tree representation that is referenced.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3282 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3283 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3284 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
3285 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
3286 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
3287 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
3288 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
3289 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
3290 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
3291 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
3292 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3293 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3294 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3295 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3296 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
3297 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
3298 </span><span class="tokenElement"></xs:element></span></pre></td>
3305 <td class="firstColumn"><b>Schema location</b></td>
3306 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
3311 <td class="rt_lineRight"></td>
3314 <td class="rt_cornerBottomLeft"></td>
3315 <td class="rt_lineBottom"></td>
3316 <td class="rt_cornerBottomRight"></td>
3318 </table><a id="id30"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id29" target="mainFrame"
3319 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3320 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/vamsas:title</span></div>
3323 <td class="rt_cornerTopLeft"></td>
3324 <td class="rt_lineTop"></td>
3325 <td class="rt_cornerTopRight"></td>
3328 <td class="rt_lineLeft"></td>
3329 <td class="rt_content">
3330 <table class="component">
3333 <td class="firstColumn"><b>Namespace</b></td>
3334 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
3337 <td class="firstColumn">
3338 <div class="floatLeft"><b>Diagram</b></div>
3339 <div class="floatRight"><input id="button_diagram_id30" type="image" src="images/button_minus.gif" value="-"
3340 onclick="switchState('diagram_id30');"
3341 class="control" /></div>
3343 <td class="diagram">
3344 <div id="diagram_id30" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html3.jpeg" /></div>
3348 <td class="firstColumn"><b>Type</b></td>
3349 <td><b>xs:string</b></td>
3352 <td class="firstColumn">
3353 <div class="floatLeft"><b>Properties</b></div>
3354 <div class="floatRight"><input id="button_properties_id30" type="image" src="images/button_minus.gif"
3356 onclick="switchState('properties_id30');"
3357 class="control" /></div>
3360 <div id="properties_id30" style="display:block">
3361 <table class="propertiesTable">
3363 <td class="firstColumn">content:
3366 <td><b>simple</b></td>
3369 <td class="firstColumn">minOccurs:
3379 <td class="firstColumn">
3380 <div class="floatLeft"><b>Source</b></div>
3381 <div class="floatRight"><input id="button_source_id30" type="image" src="images/button_minus.gif" value="-"
3382 onclick="switchState('source_id30');"
3383 class="control" /></div>
3386 <div id="source_id30" style="display:block">
3387 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3388 class="preWrapContainer">
3390 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"title"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">/></span></pre></td>
3397 <td class="firstColumn"><b>Schema location</b></td>
3398 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
3403 <td class="rt_lineRight"></td>
3406 <td class="rt_cornerBottomLeft"></td>
3407 <td class="rt_lineBottom"></td>
3408 <td class="rt_cornerBottomRight"></td>
3410 </table><a id="id31"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id29" target="mainFrame"
3411 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3412 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/vamsas:newick</span></div>
3415 <td class="rt_cornerTopLeft"></td>
3416 <td class="rt_lineTop"></td>
3417 <td class="rt_cornerTopRight"></td>
3420 <td class="rt_lineLeft"></td>
3421 <td class="rt_content">
3422 <table class="component">
3425 <td class="firstColumn"><b>Namespace</b></td>
3426 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
3429 <td class="firstColumn">
3430 <div class="floatLeft"><b>Diagram</b></div>
3431 <div class="floatRight"><input id="button_diagram_id31" type="image" src="images/button_minus.gif" value="-"
3432 onclick="switchState('diagram_id31');"
3433 class="control" /></div>
3435 <td class="diagram">
3436 <div id="diagram_id31" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html35.jpeg"
3437 usemap="#vamsasDocument_46_html35" /><map name="vamsasDocument_46_html35" id="vamsasDocument_46_html35">
3438 <area alt="vamsasDocument1.tmp#id32" href="vamsasDocument1.html#id32"
3439 coords="202,88,297,130" />
3440 <area alt="vamsasDocument1.tmp#id33" href="vamsasDocument1.html#id33"
3441 coords="202,140,285,182" />
3442 <area alt="vamsasDocument1.tmp#id34" href="vamsasDocument1.html#id34"
3443 coords="202,192,321,234" /></map></div>
3447 <td class="firstColumn"><b>Type</b></td>
3448 <td>extension of <b>xs:string</b></td>
3451 <td class="firstColumn">
3452 <div class="floatLeft"><b>Properties</b></div>
3453 <div class="floatRight"><input id="button_properties_id31" type="image" src="images/button_minus.gif"
3455 onclick="switchState('properties_id31');"
3456 class="control" /></div>
3459 <div id="properties_id31" style="display:block">
3460 <table class="propertiesTable">
3462 <td class="firstColumn">content:
3465 <td><b>complex</b></td>
3468 <td class="firstColumn">maxOccurs:
3471 <td><b>unbounded</b></td>
3478 <td class="firstColumn">
3479 <div class="floatLeft"><b>Attributes</b></div>
3480 <div class="floatRight"><input id="button_attributes_id31" type="image" src="images/button_minus.gif"
3482 onclick="switchState('attributes_id31');"
3483 class="control" /></div>
3486 <div id="attributes_id31" style="display:block">
3487 <table class="attributesTable">
3499 <td class="firstColumn"><b><a href="vamsasDocument1.html#id33" target="mainFrame" title="No namespace"
3500 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
3501 <td><b>xs:ID</b></td>
3506 <div class="annotation">
3507 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3508 class="preWrapContainer">
3510 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
3517 <td class="firstColumn"><b><a href="vamsasDocument1.html#id34" target="mainFrame" title="No namespace"
3518 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
3519 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
3520 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3521 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
3526 <div class="annotation"></div>
3530 <td class="firstColumn"><b><a href="vamsasDocument1.html#id32" target="mainFrame" title="No namespace"
3531 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">title</a></b></td>
3532 <td><b>xs:string</b></td>
3537 <div class="annotation"></div>
3545 <td class="firstColumn">
3546 <div class="floatLeft"><b>Source</b></div>
3547 <div class="floatRight"><input id="button_source_id31" type="image" src="images/button_minus.gif" value="-"
3548 onclick="switchState('source_id31');"
3549 class="control" /></div>
3552 <div id="source_id31" style="display:block">
3553 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3554 class="preWrapContainer">
3556 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"newick"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
3557 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
3558 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
3559 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
3560 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"title"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
3561 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
3562 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3563 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3564 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3565 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3566 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
3567 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
3568 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
3569 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
3570 </span><span class="tokenElement"></xs:element></span></pre></td>
3577 <td class="firstColumn"><b>Schema location</b></td>
3578 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
3583 <td class="rt_lineRight"></td>
3586 <td class="rt_cornerBottomLeft"></td>
3587 <td class="rt_lineBottom"></td>
3588 <td class="rt_cornerBottomRight"></td>
3590 </table><a id="id36"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id29" target="mainFrame"
3591 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3592 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/vamsas:treenode</span></div>
3595 <td class="rt_cornerTopLeft"></td>
3596 <td class="rt_lineTop"></td>
3597 <td class="rt_cornerTopRight"></td>
3600 <td class="rt_lineLeft"></td>
3601 <td class="rt_content">
3602 <table class="component">
3605 <td class="firstColumn"><b>Namespace</b></td>
3606 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
3609 <td class="firstColumn">
3610 <div class="floatLeft"><b>Annotations</b></div>
3611 <div class="floatRight"><input id="button_annotations_id36" type="image" src="images/button_minus.gif"
3613 onclick="switchState('annotations_id36');"
3614 class="control" /></div>
3617 <div id="annotations_id36" style="display:block">
3618 <div class="annotation">
3619 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3620 class="preWrapContainer">
3622 <td width="100%"><pre><span class="tokenText">node identity and mapping data between tree</span><span class="tokenIndent">
3623 </span><span class="tokenText">representations and vamsas document objects</span></pre></td>
3631 <td class="firstColumn">
3632 <div class="floatLeft"><b>Diagram</b></div>
3633 <div class="floatRight"><input id="button_diagram_id36" type="image" src="images/button_minus.gif" value="-"
3634 onclick="switchState('diagram_id36');"
3635 class="control" /></div>
3637 <td class="diagram">
3638 <div id="diagram_id36" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html55.jpeg"
3639 usemap="#vamsasDocument_46_html55" /><map name="vamsasDocument_46_html55" id="vamsasDocument_46_html55">
3640 <area alt="vamsasDocument1.tmp#id44" href="vamsasDocument1.html#id44"
3641 coords="261,87,344,129" />
3642 <area alt="vamsasDocument1.tmp#id45" href="vamsasDocument1.html#id45"
3643 coords="261,139,380,181" />
3644 <area alt="vamsasDocument1.tmp#id38" href="vamsasDocument1.html#id38"
3645 coords="336,201,431,243" />
3646 <area alt="vamsasDocument1.tmp#id39" href="vamsasDocument1.html#id39"
3647 coords="336,253,431,295" />
3648 <area alt="vamsasDocument1.tmp#id40" href="vamsasDocument1.html#id40"
3649 coords="336,305,502,361" />
3650 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
3651 coords="336,371,498,427" />
3652 <area alt="vamsasDocument1.tmp#id37" href="vamsasDocument1.html#id37"
3653 coords="240,22,378,44" />
3654 <area alt="vamsasDocument1.tmp#id46" href="vamsasDocument1.html#id46"
3655 coords="249,480,352,522" />
3656 <area alt="vamsasDocument1.tmp#id47" href="vamsasDocument1.html#id47"
3657 coords="249,532,345,574" /></map></div>
3661 <td class="firstColumn"><b>Type</b></td>
3662 <td>extension of <b><a href="vamsasDocument1.html#id37" target="mainFrame"
3663 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3664 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b></td>
3667 <td class="firstColumn"><b>Type hierarchy</b></td>
3670 <li><b><a href="vamsasDocument1.html#id37" target="mainFrame"
3671 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3672 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b></li>
3677 <td class="firstColumn">
3678 <div class="floatLeft"><b>Properties</b></div>
3679 <div class="floatRight"><input id="button_properties_id36" type="image" src="images/button_minus.gif"
3681 onclick="switchState('properties_id36');"
3682 class="control" /></div>
3685 <div id="properties_id36" style="display:block">
3686 <table class="propertiesTable">
3688 <td class="firstColumn">content:
3691 <td><b>complex</b></td>
3694 <td class="firstColumn">minOccurs:
3700 <td class="firstColumn">maxOccurs:
3703 <td><b>unbounded</b></td>
3710 <td class="firstColumn"><b>Model</b></td>
3711 <td><b><a href="vamsasDocument1.html#id38" target="mainFrame"
3712 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3713 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name{0,1}</a></b> , <b><a href="vamsasDocument1.html#id39" target="mainFrame"
3714 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3715 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id40" target="mainFrame"
3716 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3717 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:vref*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
3718 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3719 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b></td>
3722 <td class="firstColumn"><b>Children</b></td>
3723 <td><b><a href="vamsasDocument1.html#id39" target="mainFrame"
3724 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3725 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id38" target="mainFrame"
3726 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3727 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
3728 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3729 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id40" target="mainFrame"
3730 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3731 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:vref</a></b></td>
3734 <td class="firstColumn">
3735 <div class="floatLeft"><b>Instance</b></div>
3736 <div class="floatRight"><input id="button_instance_id36" type="image" src="images/button_minus.gif" value="-"
3737 onclick="switchState('instance_id36');"
3738 class="control" /></div>
3741 <div id="instance_id36" style="display:block">
3742 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3743 class="preWrapContainer">
3745 <td width="100%"><pre><span class="tokenElement"><vamsas:treenode</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">nodespec=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">treeId=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
3746 </span><span class="tokenElement"><vamsas:name</span><span class="tokenElement">></span><span class="tokenText">{0,1}</span><span class="tokenElement"></vamsas:name></span><span class="tokenIndent">
3747 </span><span class="tokenElement"><vamsas:description</span><span class="tokenElement">></span><span class="tokenText">{0,1}</span><span class="tokenElement"></vamsas:description></span><span class="tokenIndent">
3748 </span><span class="tokenElement"><vamsas:vref</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">refs=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:vref></span><span class="tokenIndent">
3749 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
3750 </span><span class="tokenElement"></vamsas:treenode></span></pre></td>
3757 <td class="firstColumn">
3758 <div class="floatLeft"><b>Attributes</b></div>
3759 <div class="floatRight"><input id="button_attributes_id36" type="image" src="images/button_minus.gif"
3761 onclick="switchState('attributes_id36');"
3762 class="control" /></div>
3765 <div id="attributes_id36" style="display:block">
3766 <table class="attributesTable">
3778 <td class="firstColumn"><b><a href="vamsasDocument1.html#id44" target="mainFrame" title="No namespace"
3779 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
3780 <td><b>xs:ID</b></td>
3785 <div class="annotation">
3786 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3787 class="preWrapContainer">
3789 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
3796 <td class="firstColumn"><b><a href="vamsasDocument1.html#id45" target="mainFrame" title="No namespace"
3797 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
3798 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
3799 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3800 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
3805 <div class="annotation"></div>
3809 <td class="firstColumn"><b><a href="vamsasDocument1.html#id47" target="mainFrame" title="No namespace"
3810 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">nodespec</a></b></td>
3811 <td><b>xs:string</b></td>
3816 <div class="annotation">
3817 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3818 class="preWrapContainer">
3820 <td width="100%"><pre><span class="tokenText">String uniquely identifying a particular</span><span class="tokenIndent">
3821 </span><span class="tokenText">node in the referenced tree according to the format of</span><span class="tokenIndent">
3822 </span><span class="tokenText">the tree representation that is referenced.</span></pre></td>
3829 <td class="firstColumn"><b><a href="vamsasDocument1.html#id46" target="mainFrame" title="No namespace"
3830 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">treeId</a></b></td>
3831 <td><b>xs:IDREFS</b></td>
3836 <div class="annotation">
3837 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3838 class="preWrapContainer">
3840 <td width="100%"><pre><span class="tokenText">reference to one or more trees containing</span><span class="tokenIndent">
3841 </span><span class="tokenText">the node being described.</span></pre></td>
3852 <td class="firstColumn">
3853 <div class="floatLeft"><b>Source</b></div>
3854 <div class="floatRight"><input id="button_source_id36" type="image" src="images/button_minus.gif" value="-"
3855 onclick="switchState('source_id36');"
3856 class="control" /></div>
3859 <div id="source_id36" style="display:block">
3860 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3861 class="preWrapContainer">
3863 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"treenode"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
3864 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3865 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">node identity and mapping data between tree representations and vamsas document objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3866 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3867 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
3868 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
3869 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:nodeType"</span><span class="tokenElement">></span><span class="tokenIndent">
3870 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"treeId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenElement">></span><span class="tokenIndent">
3871 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3872 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">reference to one or more trees containing the node being described.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3873 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3874 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3875 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"nodespec"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
3876 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
3877 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">String uniquely identifying a particular node in the referenced tree according to the format of the tree representation that is referenced.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
3878 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
3879 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
3880 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
3881 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
3882 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
3883 </span><span class="tokenElement"></xs:element></span></pre></td>
3890 <td class="firstColumn"><b>Schema location</b></td>
3891 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
3896 <td class="rt_lineRight"></td>
3899 <td class="rt_cornerBottomLeft"></td>
3900 <td class="rt_lineBottom"></td>
3901 <td class="rt_cornerBottomRight"></td>
3903 </table><a id="id38"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id37" target="mainFrame"
3904 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
3905 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b>/vamsas:name</span></div>
3908 <td class="rt_cornerTopLeft"></td>
3909 <td class="rt_lineTop"></td>
3910 <td class="rt_cornerTopRight"></td>
3913 <td class="rt_lineLeft"></td>
3914 <td class="rt_content">
3915 <table class="component">
3918 <td class="firstColumn"><b>Namespace</b></td>
3919 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
3922 <td class="firstColumn">
3923 <div class="floatLeft"><b>Annotations</b></div>
3924 <div class="floatRight"><input id="button_annotations_id38" type="image" src="images/button_minus.gif"
3926 onclick="switchState('annotations_id38');"
3927 class="control" /></div>
3930 <div id="annotations_id38" style="display:block">
3931 <div class="annotation">
3932 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
3933 class="preWrapContainer">
3935 <td width="100%"><pre><span class="tokenText">Short name for this node</span></pre></td>
3943 <td class="firstColumn">
3944 <div class="floatLeft"><b>Diagram</b></div>
3945 <div class="floatRight"><input id="button_diagram_id38" type="image" src="images/button_minus.gif" value="-"
3946 onclick="switchState('diagram_id38');"
3947 class="control" /></div>
3949 <td class="diagram">
3950 <div id="diagram_id38" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html52.jpeg" /></div>
3954 <td class="firstColumn"><b>Type</b></td>
3955 <td><b>xs:string</b></td>
3958 <td class="firstColumn">
3959 <div class="floatLeft"><b>Properties</b></div>
3960 <div class="floatRight"><input id="button_properties_id38" type="image" src="images/button_minus.gif"
3962 onclick="switchState('properties_id38');"
3963 class="control" /></div>
3966 <div id="properties_id38" style="display:block">
3967 <table class="propertiesTable">
3969 <td class="firstColumn">content:
3972 <td><b>simple</b></td>
3975 <td class="firstColumn">minOccurs:
3981 <td class="firstColumn">maxOccurs:
3991 <td class="firstColumn">
3992 <div class="floatLeft"><b>Source</b></div>
3993 <div class="floatRight"><input id="button_source_id38" type="image" src="images/button_minus.gif" value="-"
3994 onclick="switchState('source_id38');"
3995 class="control" /></div>
3998 <div id="source_id38" style="display:block">
3999 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4000 class="preWrapContainer">
4002 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"1"</span><span class="tokenElement">></span><span class="tokenIndent">
4003 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4004 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Short name for this node</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4005 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4006 </span><span class="tokenElement"></xs:element></span></pre></td>
4013 <td class="firstColumn"><b>Schema location</b></td>
4014 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
4019 <td class="rt_lineRight"></td>
4022 <td class="rt_cornerBottomLeft"></td>
4023 <td class="rt_lineBottom"></td>
4024 <td class="rt_cornerBottomRight"></td>
4026 </table><a id="id39"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id37" target="mainFrame"
4027 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4028 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b>/vamsas:description</span></div>
4031 <td class="rt_cornerTopLeft"></td>
4032 <td class="rt_lineTop"></td>
4033 <td class="rt_cornerTopRight"></td>
4036 <td class="rt_lineLeft"></td>
4037 <td class="rt_content">
4038 <table class="component">
4041 <td class="firstColumn"><b>Namespace</b></td>
4042 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
4045 <td class="firstColumn">
4046 <div class="floatLeft"><b>Annotations</b></div>
4047 <div class="floatRight"><input id="button_annotations_id39" type="image" src="images/button_minus.gif"
4049 onclick="switchState('annotations_id39');"
4050 class="control" /></div>
4053 <div id="annotations_id39" style="display:block">
4054 <div class="annotation">
4055 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4056 class="preWrapContainer">
4058 <td width="100%"><pre><span class="tokenText">Descriptive text for this node</span></pre></td>
4066 <td class="firstColumn">
4067 <div class="floatLeft"><b>Diagram</b></div>
4068 <div class="floatRight"><input id="button_diagram_id39" type="image" src="images/button_minus.gif" value="-"
4069 onclick="switchState('diagram_id39');"
4070 class="control" /></div>
4072 <td class="diagram">
4073 <div id="diagram_id39" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html13.jpeg" /></div>
4077 <td class="firstColumn"><b>Type</b></td>
4078 <td><b>xs:string</b></td>
4081 <td class="firstColumn">
4082 <div class="floatLeft"><b>Properties</b></div>
4083 <div class="floatRight"><input id="button_properties_id39" type="image" src="images/button_minus.gif"
4085 onclick="switchState('properties_id39');"
4086 class="control" /></div>
4089 <div id="properties_id39" style="display:block">
4090 <table class="propertiesTable">
4092 <td class="firstColumn">content:
4095 <td><b>simple</b></td>
4098 <td class="firstColumn">minOccurs:
4104 <td class="firstColumn">maxOccurs:
4114 <td class="firstColumn">
4115 <div class="floatLeft"><b>Source</b></div>
4116 <div class="floatRight"><input id="button_source_id39" type="image" src="images/button_minus.gif" value="-"
4117 onclick="switchState('source_id39');"
4118 class="control" /></div>
4121 <div id="source_id39" style="display:block">
4122 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4123 class="preWrapContainer">
4125 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"1"</span><span class="tokenElement">></span><span class="tokenIndent">
4126 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4127 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Descriptive text for this node</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4128 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4129 </span><span class="tokenElement"></xs:element></span></pre></td>
4136 <td class="firstColumn"><b>Schema location</b></td>
4137 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
4142 <td class="rt_lineRight"></td>
4145 <td class="rt_cornerBottomLeft"></td>
4146 <td class="rt_lineBottom"></td>
4147 <td class="rt_cornerBottomRight"></td>
4149 </table><a id="id40"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id37" target="mainFrame"
4150 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4151 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b>/vamsas:vref</span></div>
4154 <td class="rt_cornerTopLeft"></td>
4155 <td class="rt_lineTop"></td>
4156 <td class="rt_cornerTopRight"></td>
4159 <td class="rt_lineLeft"></td>
4160 <td class="rt_content">
4161 <table class="component">
4164 <td class="firstColumn"><b>Namespace</b></td>
4165 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
4168 <td class="firstColumn">
4169 <div class="floatLeft"><b>Annotations</b></div>
4170 <div class="floatRight"><input id="button_annotations_id40" type="image" src="images/button_minus.gif"
4172 onclick="switchState('annotations_id40');"
4173 class="control" /></div>
4176 <div id="annotations_id40" style="display:block">
4177 <div class="annotation">
4178 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4179 class="preWrapContainer">
4181 <td width="100%"><pre><span class="tokenText">Direct associations between this node and any vamsas</span><span class="tokenIndent">
4182 </span><span class="tokenText">objects</span></pre></td>
4190 <td class="firstColumn">
4191 <div class="floatLeft"><b>Diagram</b></div>
4192 <div class="floatRight"><input id="button_diagram_id40" type="image" src="images/button_minus.gif" value="-"
4193 onclick="switchState('diagram_id40');"
4194 class="control" /></div>
4196 <td class="diagram">
4197 <div id="diagram_id40" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html28.jpeg"
4198 usemap="#vamsasDocument_46_html28" /><map name="vamsasDocument_46_html28" id="vamsasDocument_46_html28">
4199 <area alt="vamsasDocument1.tmp#id42" href="vamsasDocument1.html#id42"
4200 coords="218,112,301,154" />
4201 <area alt="vamsasDocument1.tmp#id43" href="vamsasDocument1.html#id43"
4202 coords="218,164,321,206" />
4203 <area alt="vamsasDocument1.tmp#id41" href="vamsasDocument1.html#id41"
4204 coords="197,11,359,33" /></map></div>
4208 <td class="firstColumn"><b>Type</b></td>
4209 <td><b><a href="vamsasDocument1.html#id41" target="mainFrame"
4210 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4211 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:referenceType</a></b></td>
4214 <td class="firstColumn">
4215 <div class="floatLeft"><b>Properties</b></div>
4216 <div class="floatRight"><input id="button_properties_id40" type="image" src="images/button_minus.gif"
4218 onclick="switchState('properties_id40');"
4219 class="control" /></div>
4222 <div id="properties_id40" style="display:block">
4223 <table class="propertiesTable">
4225 <td class="firstColumn">content:
4228 <td><b>complex</b></td>
4231 <td class="firstColumn">minOccurs:
4237 <td class="firstColumn">maxOccurs:
4240 <td><b>unbounded</b></td>
4247 <td class="firstColumn">
4248 <div class="floatLeft"><b>Attributes</b></div>
4249 <div class="floatRight"><input id="button_attributes_id40" type="image" src="images/button_minus.gif"
4251 onclick="switchState('attributes_id40');"
4252 class="control" /></div>
4255 <div id="attributes_id40" style="display:block">
4256 <table class="attributesTable">
4268 <td class="firstColumn"><b><a href="vamsasDocument1.html#id42" target="mainFrame" title="No namespace"
4269 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
4270 <td><b>xs:ID</b></td>
4275 <div class="annotation">
4276 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4277 class="preWrapContainer">
4279 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
4286 <td class="firstColumn"><b><a href="vamsasDocument1.html#id43" target="mainFrame" title="No namespace"
4287 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">refs</a></b></td>
4288 <td><b>xs:IDREFS</b></td>
4293 <div class="annotation">
4294 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4295 class="preWrapContainer">
4297 <td width="100%"><pre><span class="tokenText">List of one or more vamsas object</span><span class="tokenIndent">
4298 </span><span class="tokenText">references</span></pre></td>
4309 <td class="firstColumn">
4310 <div class="floatLeft"><b>Source</b></div>
4311 <div class="floatRight"><input id="button_source_id40" type="image" src="images/button_minus.gif" value="-"
4312 onclick="switchState('source_id40');"
4313 class="control" /></div>
4316 <div id="source_id40" style="display:block">
4317 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4318 class="preWrapContainer">
4320 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"vref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:referenceType"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4321 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4322 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Direct associations between this node and any vamsas objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4323 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4324 </span><span class="tokenElement"></xs:element></span></pre></td>
4331 <td class="firstColumn"><b>Schema location</b></td>
4332 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
4337 <td class="rt_lineRight"></td>
4340 <td class="rt_cornerBottomLeft"></td>
4341 <td class="rt_lineBottom"></td>
4342 <td class="rt_cornerBottomRight"></td>
4344 </table><a id="id50"></a><div class="componentTitle">Element <span class="qname">vamsas:DataSet</span></div>
4347 <td class="rt_cornerTopLeft"></td>
4348 <td class="rt_lineTop"></td>
4349 <td class="rt_cornerTopRight"></td>
4352 <td class="rt_lineLeft"></td>
4353 <td class="rt_content">
4354 <table class="component">
4357 <td class="firstColumn"><b>Namespace</b></td>
4358 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
4361 <td class="firstColumn">
4362 <div class="floatLeft"><b>Diagram</b></div>
4363 <div class="floatRight"><input id="button_diagram_id50" type="image" src="images/button_minus.gif" value="-"
4364 onclick="switchState('diagram_id50');"
4365 class="control" /></div>
4367 <td class="diagram">
4368 <div id="diagram_id50" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html40.jpeg"
4369 usemap="#vamsasDocument_46_html40" /><map name="vamsasDocument_46_html40" id="vamsasDocument_46_html40">
4370 <area alt="vamsasDocument1.tmp#id112" href="vamsasDocument1.html#id112"
4371 coords="107,43,190,85" />
4372 <area alt="vamsasDocument1.tmp#id51" href="vamsasDocument1.html#id51"
4373 coords="182,105,416,161" />
4374 <area alt="vamsasDocument1.tmp#id75" href="vamsasDocument1.html#id75"
4375 coords="182,171,387,227" />
4376 <area alt="vamsasDocument1.tmp#id79" href="vamsasDocument1.html#id79"
4377 coords="182,237,423,293" />
4378 <area alt="vamsasDocument1.tmp#id99" href="vamsasDocument1.html#id99"
4379 coords="182,303,258,341" />
4380 <area alt="vamsasDocument1.tmp#id29" href="vamsasDocument1.html#id29"
4381 coords="182,351,274,389" />
4382 <area alt="vamsasDocument1.tmp#id5" href="vamsasDocument1.html#id5"
4383 coords="182,399,310,423" /></map></div>
4387 <td class="firstColumn">
4388 <div class="floatLeft"><b>Properties</b></div>
4389 <div class="floatRight"><input id="button_properties_id50" type="image" src="images/button_minus.gif"
4391 onclick="switchState('properties_id50');"
4392 class="control" /></div>
4395 <div id="properties_id50" style="display:block">
4396 <table class="propertiesTable">
4398 <td class="firstColumn">content:
4401 <td><b>complex</b></td>
4408 <td class="firstColumn">
4409 <div class="floatLeft"><b>Used by</b></div>
4410 <div class="floatRight"><input id="button_usedBy_id50" type="image" src="images/button_minus.gif" value="-"
4411 onclick="switchState('usedBy_id50');"
4412 class="control" /></div>
4415 <div id="usedBy_id50" style="display:block">
4416 <table class="usedByTable">
4418 <td class="firstColumn">Element </td>
4419 <td><b><a href="vamsasDocument1.html#id28" target="mainFrame"
4420 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4421 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS</a></b></td>
4428 <td class="firstColumn"><b>Model</b></td>
4429 <td><b><a href="vamsasDocument1.html#id51" target="mainFrame"
4430 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4431 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence+</a></b> , <b><a href="vamsasDocument1.html#id75" target="mainFrame"
4432 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4433 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequenceMapping*</a></b> , <b><a href="vamsasDocument1.html#id79" target="mainFrame"
4434 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4435 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSetAnnotations*</a></b> , <b><a href="vamsasDocument1.html#id99" target="mainFrame"
4436 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4437 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment*</a></b> , <b><a href="vamsasDocument1.html#id29" target="mainFrame"
4438 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4439 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree*</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
4440 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4441 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
4444 <td class="firstColumn"><b>Children</b></td>
4445 <td><b><a href="vamsasDocument1.html#id99" target="mainFrame"
4446 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4447 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>, <b><a href="vamsasDocument1.html#id79" target="mainFrame"
4448 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4449 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSetAnnotations</a></b>, <b><a href="vamsasDocument1.html#id5" target="mainFrame"
4450 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4451 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id51" target="mainFrame"
4452 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4453 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>, <b><a href="vamsasDocument1.html#id29" target="mainFrame"
4454 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4455 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>, <b><a href="vamsasDocument1.html#id75" target="mainFrame"
4456 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4457 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequenceMapping</a></b></td>
4460 <td class="firstColumn">
4461 <div class="floatLeft"><b>Instance</b></div>
4462 <div class="floatRight"><input id="button_instance_id50" type="image" src="images/button_minus.gif" value="-"
4463 onclick="switchState('instance_id50');"
4464 class="control" /></div>
4467 <div id="instance_id50" style="display:block">
4468 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4469 class="preWrapContainer">
4471 <td width="100%"><pre><span class="tokenElement"><vamsas:DataSet</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
4472 </span><span class="tokenElement"><vamsas:Sequence</span><span class="tokenText"> </span><span class="tokenAttrName">dictionary=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:Sequence></span><span class="tokenIndent">
4473 </span><span class="tokenElement"><vamsas:sequenceMapping</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">loc=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">map=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:sequenceMapping></span><span class="tokenIndent">
4474 </span><span class="tokenElement"><vamsas:DataSetAnnotations</span><span class="tokenText"> </span><span class="tokenAttrName">group=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">seqRef=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:DataSetAnnotations></span><span class="tokenIndent">
4475 </span><span class="tokenElement"><vamsas:Alignment</span><span class="tokenText"> </span><span class="tokenAttrName">aligned=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">gapChar=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:Alignment></span><span class="tokenIndent">
4476 </span><span class="tokenElement"><vamsas:Tree</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:Tree></span><span class="tokenIndent">
4477 </span><span class="tokenElement"><vamsas:Provenance</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:Provenance></span><span class="tokenIndent">
4478 </span><span class="tokenElement"></vamsas:DataSet></span></pre></td>
4485 <td class="firstColumn">
4486 <div class="floatLeft"><b>Attributes</b></div>
4487 <div class="floatRight"><input id="button_attributes_id50" type="image" src="images/button_minus.gif"
4489 onclick="switchState('attributes_id50');"
4490 class="control" /></div>
4493 <div id="attributes_id50" style="display:block">
4494 <table class="attributesTable">
4506 <td class="firstColumn"><b><a href="vamsasDocument1.html#id112" target="mainFrame" title="No namespace"
4507 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
4508 <td><b>xs:ID</b></td>
4513 <div class="annotation">
4514 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4515 class="preWrapContainer">
4517 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
4528 <td class="firstColumn">
4529 <div class="floatLeft"><b>Source</b></div>
4530 <div class="floatRight"><input id="button_source_id50" type="image" src="images/button_minus.gif" value="-"
4531 onclick="switchState('source_id50');"
4532 class="control" /></div>
4535 <div id="source_id50" style="display:block">
4536 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4537 class="preWrapContainer">
4539 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"DataSet"</span><span class="tokenElement">></span><span class="tokenIndent">
4540 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4541 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4542 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">A collection of sequences, alignments, trees and other things.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4543 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: Add a title field and properties for programs that can present the user with different distinct datasets For the moment, the program just presents them as a list and perhaps lets the user work out which dataset it wants based on the alignments that it contains. (Dominik and Jim 7th June 2007)</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4544 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4545 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4546 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Sequence"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4547 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4548 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4549 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">a primary or secondary sequence record from which all other sequences may be derived</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4550 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4551 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4552 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:SequenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
4553 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4554 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dbRef"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4555 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4556 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Store a list of database references for this sequence record - with optional mapping from database sequence to the given sequence record</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4557 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
4558 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
4559 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4560 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4561 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4562 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4563 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4564 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">the local mapType maps from the parent sequence coordinate frame to the reference frame defined by the dbRef element. The mapped mapType is the mapped range defined on the dbRef element's reference frame. Conventionally, the unit attribute defaults to 1, or will be inferred from the local sequence's dictionary type and any dictionary type associated with the database being mapped to. However, it may be used to avoid ambiguity.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4565 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4566 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4567 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4568 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
4569 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenElement">/></span><span class="tokenIndent">
4570 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4571 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4572 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4573 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4574 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:link"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
4575 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
4576 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4577 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"source"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4578 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4579 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO Database Naming Convention: either start using LSID (so change type to URI) or leave this as an uncontrolled/unspecified string ID</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4580 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4581 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4582 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"version"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4583 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4584 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Version must be specified -</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4585 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4586 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4587 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"accessionId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4588 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4589 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: make some specification of the database field from which this accessionId is taken from - should that be a special property of the dbRef object ?</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4590 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4591 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4592 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
4593 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4594 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4595 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4596 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4597 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4598 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4599 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"vxref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:referenceType"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4600 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4601 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">explicitly named cross reference to other objects in the document.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4602 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4603 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4604 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4605 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
4606 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4607 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4608 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4609 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4610 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dictionary"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4611 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4612 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">symbol class for sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4613 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4614 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4615 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4616 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4617 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4618 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4619 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"sequenceMapping"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4620 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4621 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4622 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">A mapping between the specified 'local' and 'mapped' sequence coordinate frames. The step size between each coordinate frame depends on the sequence dictionary types, or alternatively specified in the optional unit attribute on each range element.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4623 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4624 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4625 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
4626 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4627 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
4628 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4629 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"loc"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4630 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4631 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object on which the local range is defined.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4632 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4633 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4634 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4635 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4636 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object on which the mapped range is defined.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4637 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4638 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4639 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
4640 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4641 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4642 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4643 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4644 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"DataSetAnnotations"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4645 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4646 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4647 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotate over positions and regions of a dataset sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4648 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4649 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4650 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
4651 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4652 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
4653 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4654 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqRef"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4655 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4656 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a particular dataset sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4657 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4658 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4659 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4660 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4661 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4662 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4663 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Alignment"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4664 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4665 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4666 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4667 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4668 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">This is annotation over the coordinate frame defined by all the columns in the alignment.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4669 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4670 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4671 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4672 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
4673 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4674 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
4675 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4676 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4677 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4678 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4679 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4680 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4681 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqrefs"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
4682 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4683 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a range on a particular group of alignment sequences</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4684 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4685 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4686 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4687 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4688 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4689 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4690 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Tree"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
4691 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"alignmentSequence"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4692 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4693 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4694 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:SequenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
4695 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4696 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentSequenceAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4697 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
4698 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4699 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotate over positions and regions of the ungapped sequence in the context of the alignment</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4700 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
4701 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4702 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
4703 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
4704 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
4705 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
4706 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4707 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4708 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4709 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4710 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4711 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4712 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4713 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4714 </span><span class="tokenComment"><!--
4715 This replaces the flat list of sequenceFeatures.
4716 <xs:element name="AlignmentFeatures" minOccurs="0" maxOccurs="unbounded"><xs:complexType><xs:annotation>
4717 <xs:documentation>Annotate over positions and regions of the alignment</xs:documentation>
4718 </xs:annotation><xs:complexContent>
4719 <xs:extension base="vamsas:rangeFeature">
4720 <xs:attribute name="seqRef" type="xs:IDREF" use="optional">
4721 <xs:annotation><xs:documentation>annotation may be associated with a particular sequence lying within the same reference frame as the rangeType's objRef</xs:documentation></xs:annotation>
4722 </xs:attribute>
4723 </xs:extension>
4724 </xs:complexContent></xs:complexType></xs:element> --></span><span class="tokenIndent">
4725 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4726 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4727 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4728 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
4729 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4730 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4731 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4732 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4733 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"refid"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
4734 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4735 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Dataset Sequence from which this alignment sequence is taken from</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4736 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4737 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4738 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
4739 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
4740 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4741 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4742 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
4743 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4744 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">typical properties may be additional alignment score objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4745 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4746 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4747 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
4748 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4749 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"gapChar"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
4750 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"aligned"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
4751 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
4752 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4753 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4754 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4755 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4756 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
4757 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4758 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
4759 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Tree"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
4760 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
4761 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
4762 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
4763 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
4764 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
4765 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
4766 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
4767 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
4768 </span><span class="tokenElement"></xs:element></span></pre></td>
4775 <td class="firstColumn"><b>Schema location</b></td>
4776 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
4781 <td class="rt_lineRight"></td>
4784 <td class="rt_cornerBottomLeft"></td>
4785 <td class="rt_lineBottom"></td>
4786 <td class="rt_cornerBottomRight"></td>
4788 </table><a id="id51"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id50" target="mainFrame"
4789 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4790 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:Sequence</span></div>
4793 <td class="rt_cornerTopLeft"></td>
4794 <td class="rt_lineTop"></td>
4795 <td class="rt_cornerTopRight"></td>
4798 <td class="rt_lineLeft"></td>
4799 <td class="rt_content">
4800 <table class="component">
4803 <td class="firstColumn"><b>Namespace</b></td>
4804 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
4807 <td class="firstColumn">
4808 <div class="floatLeft"><b>Diagram</b></div>
4809 <div class="floatRight"><input id="button_diagram_id51" type="image" src="images/button_minus.gif" value="-"
4810 onclick="switchState('diagram_id51');"
4811 class="control" /></div>
4813 <td class="diagram">
4814 <div id="diagram_id51" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html37.jpeg"
4815 usemap="#vamsasDocument_46_html37" /><map name="vamsasDocument_46_html37" id="vamsasDocument_46_html37">
4816 <area alt="vamsasDocument1.tmp#id56" href="vamsasDocument1.html#id56"
4817 coords="286,87,387,129" />
4818 <area alt="vamsasDocument1.tmp#id57" href="vamsasDocument1.html#id57"
4819 coords="286,139,387,181" />
4820 <area alt="vamsasDocument1.tmp#id53" href="vamsasDocument1.html#id53"
4821 coords="361,201,456,243" />
4822 <area alt="vamsasDocument1.tmp#id54" href="vamsasDocument1.html#id54"
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4825 coords="361,305,456,347" />
4826 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
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4829 coords="265,22,428,44" />
4830 <area alt="vamsasDocument1.tmp#id73" href="vamsasDocument1.html#id73"
4831 coords="274,466,357,508" />
4832 <area alt="vamsasDocument1.tmp#id74" href="vamsasDocument1.html#id74"
4833 coords="274,518,369,560" />
4834 <area alt="vamsasDocument1.tmp#id58" href="vamsasDocument1.html#id58"
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4836 <area alt="vamsasDocument1.tmp#id72" href="vamsasDocument1.html#id72"
4837 coords="349,628,515,684" /></map></div>
4841 <td class="firstColumn"><b>Type</b></td>
4842 <td>extension of <b><a href="vamsasDocument1.html#id52" target="mainFrame"
4843 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4844 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b></td>
4847 <td class="firstColumn"><b>Type hierarchy</b></td>
4850 <li><b><a href="vamsasDocument1.html#id52" target="mainFrame"
4851 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4852 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b></li>
4857 <td class="firstColumn">
4858 <div class="floatLeft"><b>Properties</b></div>
4859 <div class="floatRight"><input id="button_properties_id51" type="image" src="images/button_minus.gif"
4861 onclick="switchState('properties_id51');"
4862 class="control" /></div>
4865 <div id="properties_id51" style="display:block">
4866 <table class="propertiesTable">
4868 <td class="firstColumn">content:
4871 <td><b>complex</b></td>
4874 <td class="firstColumn">maxOccurs:
4877 <td><b>unbounded</b></td>
4884 <td class="firstColumn"><b>Model</b></td>
4885 <td><b><a href="vamsasDocument1.html#id53" target="mainFrame"
4886 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4887 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequence</a></b> , <b><a href="vamsasDocument1.html#id54" target="mainFrame"
4888 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4889 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b> , <b><a href="vamsasDocument1.html#id55" target="mainFrame"
4890 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4891 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
4892 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4893 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id58" target="mainFrame"
4894 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4895 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef*</a></b> , <b><a href="vamsasDocument1.html#id72" target="mainFrame"
4896 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4897 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:vxref*</a></b></td>
4900 <td class="firstColumn"><b>Children</b></td>
4901 <td><b><a href="vamsasDocument1.html#id58" target="mainFrame"
4902 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4903 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>, <b><a href="vamsasDocument1.html#id55" target="mainFrame"
4904 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4905 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id54" target="mainFrame"
4906 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4907 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
4908 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4909 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id53" target="mainFrame"
4910 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4911 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequence</a></b>, <b><a href="vamsasDocument1.html#id72" target="mainFrame"
4912 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
4913 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:vxref</a></b></td>
4916 <td class="firstColumn">
4917 <div class="floatLeft"><b>Instance</b></div>
4918 <div class="floatRight"><input id="button_instance_id51" type="image" src="images/button_minus.gif" value="-"
4919 onclick="switchState('instance_id51');"
4920 class="control" /></div>
4923 <div id="instance_id51" style="display:block">
4924 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4925 class="preWrapContainer">
4927 <td width="100%"><pre><span class="tokenElement"><vamsas:Sequence</span><span class="tokenText"> </span><span class="tokenAttrName">dictionary=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
4928 </span><span class="tokenElement"><vamsas:sequence</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:sequence></span><span class="tokenIndent">
4929 </span><span class="tokenElement"><vamsas:name</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:name></span><span class="tokenIndent">
4930 </span><span class="tokenElement"><vamsas:description</span><span class="tokenElement">></span><span class="tokenText">{0,1}</span><span class="tokenElement"></vamsas:description></span><span class="tokenIndent">
4931 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
4932 </span><span class="tokenElement"></vamsas:Sequence></span></pre></td>
4939 <td class="firstColumn">
4940 <div class="floatLeft"><b>Attributes</b></div>
4941 <div class="floatRight"><input id="button_attributes_id51" type="image" src="images/button_minus.gif"
4943 onclick="switchState('attributes_id51');"
4944 class="control" /></div>
4947 <div id="attributes_id51" style="display:block">
4948 <table class="attributesTable">
4960 <td class="firstColumn"><b><a href="vamsasDocument1.html#id74" target="mainFrame" title="No namespace"
4961 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">dictionary</a></b></td>
4962 <td><b>xs:string</b></td>
4967 <div class="annotation">
4968 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4969 class="preWrapContainer">
4971 <td width="100%"><pre><span class="tokenText">symbol class for sequence</span></pre></td>
4978 <td class="firstColumn"><b><a href="vamsasDocument1.html#id57" target="mainFrame" title="No namespace"
4979 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">end</a></b></td>
4980 <td><b>xs:integer</b></td>
4985 <div class="annotation"></div>
4989 <td class="firstColumn"><b><a href="vamsasDocument1.html#id73" target="mainFrame" title="No namespace"
4990 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
4991 <td><b>xs:ID</b></td>
4996 <div class="annotation">
4997 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
4998 class="preWrapContainer">
5000 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
5007 <td class="firstColumn"><b><a href="vamsasDocument1.html#id56" target="mainFrame" title="No namespace"
5008 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">start</a></b></td>
5009 <td><b>xs:integer</b></td>
5014 <div class="annotation"></div>
5022 <td class="firstColumn">
5023 <div class="floatLeft"><b>Source</b></div>
5024 <div class="floatRight"><input id="button_source_id51" type="image" src="images/button_minus.gif" value="-"
5025 onclick="switchState('source_id51');"
5026 class="control" /></div>
5029 <div id="source_id51" style="display:block">
5030 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5031 class="preWrapContainer">
5033 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Sequence"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5034 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
5035 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5036 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">a primary or secondary sequence record from which all other sequences may be derived</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5037 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5038 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
5039 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:SequenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
5040 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
5041 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dbRef"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5042 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5043 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Store a list of database references for this sequence record - with optional mapping from database sequence to the given sequence record</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5044 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
5045 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
5046 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5047 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
5048 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
5049 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5050 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5051 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">the local mapType maps from the parent sequence coordinate frame to the reference frame defined by the dbRef element. The mapped mapType is the mapped range defined on the dbRef element's reference frame. Conventionally, the unit attribute defaults to 1, or will be inferred from the local sequence's dictionary type and any dictionary type associated with the database being mapped to. However, it may be used to avoid ambiguity.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5052 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5053 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
5054 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
5055 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
5056 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenElement">/></span><span class="tokenIndent">
5057 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
5058 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
5059 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
5060 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
5061 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:link"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
5062 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
5063 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
5064 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"source"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5065 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5066 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO Database Naming Convention: either start using LSID (so change type to URI) or leave this as an uncontrolled/unspecified string ID</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5067 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5068 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5069 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"version"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5070 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5071 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Version must be specified -</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5072 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5073 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5074 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"accessionId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5075 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5076 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: make some specification of the database field from which this accessionId is taken from - should that be a special property of the dbRef object ?</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5077 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5078 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5079 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
5080 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5081 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5082 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5083 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5084 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
5085 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
5086 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"vxref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:referenceType"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5087 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5088 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">explicitly named cross reference to other objects in the document.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5089 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5090 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
5091 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
5092 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
5093 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5094 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5095 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5096 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5097 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dictionary"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5098 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5099 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">symbol class for sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5100 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5101 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5102 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
5103 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
5104 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
5105 </span><span class="tokenElement"></xs:element></span></pre></td>
5112 <td class="firstColumn"><b>Schema location</b></td>
5113 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
5118 <td class="rt_lineRight"></td>
5121 <td class="rt_cornerBottomLeft"></td>
5122 <td class="rt_lineBottom"></td>
5123 <td class="rt_cornerBottomRight"></td>
5125 </table><a id="id53"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id52" target="mainFrame"
5126 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5127 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b>/vamsas:sequence</span></div>
5130 <td class="rt_cornerTopLeft"></td>
5131 <td class="rt_lineTop"></td>
5132 <td class="rt_cornerTopRight"></td>
5135 <td class="rt_lineLeft"></td>
5136 <td class="rt_content">
5137 <table class="component">
5140 <td class="firstColumn"><b>Namespace</b></td>
5141 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
5144 <td class="firstColumn">
5145 <div class="floatLeft"><b>Diagram</b></div>
5146 <div class="floatRight"><input id="button_diagram_id53" type="image" src="images/button_minus.gif" value="-"
5147 onclick="switchState('diagram_id53');"
5148 class="control" /></div>
5150 <td class="diagram">
5151 <div id="diagram_id53" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html41.jpeg" /></div>
5155 <td class="firstColumn"><b>Type</b></td>
5156 <td><b>xs:string</b></td>
5159 <td class="firstColumn">
5160 <div class="floatLeft"><b>Properties</b></div>
5161 <div class="floatRight"><input id="button_properties_id53" type="image" src="images/button_minus.gif"
5163 onclick="switchState('properties_id53');"
5164 class="control" /></div>
5167 <div id="properties_id53" style="display:block">
5168 <table class="propertiesTable">
5170 <td class="firstColumn">content:
5173 <td><b>simple</b></td>
5180 <td class="firstColumn">
5181 <div class="floatLeft"><b>Source</b></div>
5182 <div class="floatRight"><input id="button_source_id53" type="image" src="images/button_minus.gif" value="-"
5183 onclick="switchState('source_id53');"
5184 class="control" /></div>
5187 <div id="source_id53" style="display:block">
5188 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5189 class="preWrapContainer">
5191 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"sequence"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span></pre></td>
5198 <td class="firstColumn"><b>Schema location</b></td>
5199 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
5204 <td class="rt_lineRight"></td>
5207 <td class="rt_cornerBottomLeft"></td>
5208 <td class="rt_lineBottom"></td>
5209 <td class="rt_cornerBottomRight"></td>
5211 </table><a id="id54"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id52" target="mainFrame"
5212 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5213 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b>/vamsas:name</span></div>
5216 <td class="rt_cornerTopLeft"></td>
5217 <td class="rt_lineTop"></td>
5218 <td class="rt_cornerTopRight"></td>
5221 <td class="rt_lineLeft"></td>
5222 <td class="rt_content">
5223 <table class="component">
5226 <td class="firstColumn"><b>Namespace</b></td>
5227 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
5230 <td class="firstColumn">
5231 <div class="floatLeft"><b>Diagram</b></div>
5232 <div class="floatRight"><input id="button_diagram_id54" type="image" src="images/button_minus.gif" value="-"
5233 onclick="switchState('diagram_id54');"
5234 class="control" /></div>
5236 <td class="diagram">
5237 <div id="diagram_id54" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html18.jpeg" /></div>
5241 <td class="firstColumn"><b>Type</b></td>
5242 <td><b>xs:string</b></td>
5245 <td class="firstColumn">
5246 <div class="floatLeft"><b>Properties</b></div>
5247 <div class="floatRight"><input id="button_properties_id54" type="image" src="images/button_minus.gif"
5249 onclick="switchState('properties_id54');"
5250 class="control" /></div>
5253 <div id="properties_id54" style="display:block">
5254 <table class="propertiesTable">
5256 <td class="firstColumn">content:
5259 <td><b>simple</b></td>
5266 <td class="firstColumn">
5267 <div class="floatLeft"><b>Source</b></div>
5268 <div class="floatRight"><input id="button_source_id54" type="image" src="images/button_minus.gif" value="-"
5269 onclick="switchState('source_id54');"
5270 class="control" /></div>
5273 <div id="source_id54" style="display:block">
5274 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5275 class="preWrapContainer">
5277 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span></pre></td>
5284 <td class="firstColumn"><b>Schema location</b></td>
5285 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
5290 <td class="rt_lineRight"></td>
5293 <td class="rt_cornerBottomLeft"></td>
5294 <td class="rt_lineBottom"></td>
5295 <td class="rt_cornerBottomRight"></td>
5297 </table><a id="id55"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id52" target="mainFrame"
5298 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5299 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b>/vamsas:description</span></div>
5302 <td class="rt_cornerTopLeft"></td>
5303 <td class="rt_lineTop"></td>
5304 <td class="rt_cornerTopRight"></td>
5307 <td class="rt_lineLeft"></td>
5308 <td class="rt_content">
5309 <table class="component">
5312 <td class="firstColumn"><b>Namespace</b></td>
5313 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
5316 <td class="firstColumn">
5317 <div class="floatLeft"><b>Diagram</b></div>
5318 <div class="floatRight"><input id="button_diagram_id55" type="image" src="images/button_minus.gif" value="-"
5319 onclick="switchState('diagram_id55');"
5320 class="control" /></div>
5322 <td class="diagram">
5323 <div id="diagram_id55" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html21.jpeg" /></div>
5327 <td class="firstColumn"><b>Type</b></td>
5328 <td><b>xs:string</b></td>
5331 <td class="firstColumn">
5332 <div class="floatLeft"><b>Properties</b></div>
5333 <div class="floatRight"><input id="button_properties_id55" type="image" src="images/button_minus.gif"
5335 onclick="switchState('properties_id55');"
5336 class="control" /></div>
5339 <div id="properties_id55" style="display:block">
5340 <table class="propertiesTable">
5342 <td class="firstColumn">content:
5345 <td><b>simple</b></td>
5348 <td class="firstColumn">minOccurs:
5358 <td class="firstColumn">
5359 <div class="floatLeft"><b>Source</b></div>
5360 <div class="floatRight"><input id="button_source_id55" type="image" src="images/button_minus.gif" value="-"
5361 onclick="switchState('source_id55');"
5362 class="control" /></div>
5365 <div id="source_id55" style="display:block">
5366 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5367 class="preWrapContainer">
5369 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">/></span></pre></td>
5376 <td class="firstColumn"><b>Schema location</b></td>
5377 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
5382 <td class="rt_lineRight"></td>
5385 <td class="rt_cornerBottomLeft"></td>
5386 <td class="rt_lineBottom"></td>
5387 <td class="rt_cornerBottomRight"></td>
5389 </table><a id="id58"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id51" target="mainFrame"
5390 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5391 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
5392 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5393 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:dbRef</span></div>
5396 <td class="rt_cornerTopLeft"></td>
5397 <td class="rt_lineTop"></td>
5398 <td class="rt_cornerTopRight"></td>
5401 <td class="rt_lineLeft"></td>
5402 <td class="rt_content">
5403 <table class="component">
5406 <td class="firstColumn"><b>Namespace</b></td>
5407 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
5410 <td class="firstColumn">
5411 <div class="floatLeft"><b>Annotations</b></div>
5412 <div class="floatRight"><input id="button_annotations_id58" type="image" src="images/button_minus.gif"
5414 onclick="switchState('annotations_id58');"
5415 class="control" /></div>
5418 <div id="annotations_id58" style="display:block">
5419 <div class="annotation">
5420 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5421 class="preWrapContainer">
5423 <td width="100%"><pre><span class="tokenText">Store a list of database references</span><span class="tokenIndent">
5424 </span><span class="tokenText">for this sequence record - with optional mapping</span><span class="tokenIndent">
5425 </span><span class="tokenText">from database sequence to the given sequence record</span></pre></td>
5429 <div class="annotation"></div>
5430 <div class="annotation"></div>
5435 <td class="firstColumn">
5436 <div class="floatLeft"><b>Diagram</b></div>
5437 <div class="floatRight"><input id="button_diagram_id58" type="image" src="images/button_minus.gif" value="-"
5438 onclick="switchState('diagram_id58');"
5439 class="control" /></div>
5441 <td class="diagram">
5442 <div id="diagram_id58" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html4.jpeg"
5443 usemap="#vamsasDocument_46_html4" /><map name="vamsasDocument_46_html4" id="vamsasDocument_46_html4">
5444 <area alt="vamsasDocument1.tmp#id68" href="vamsasDocument1.html#id68"
5445 coords="99,43,194,85" />
5446 <area alt="vamsasDocument1.tmp#id69" href="vamsasDocument1.html#id69"
5447 coords="99,95,194,137" />
5448 <area alt="vamsasDocument1.tmp#id70" href="vamsasDocument1.html#id70"
5449 coords="99,147,205,189" />
5450 <area alt="vamsasDocument1.tmp#id71" href="vamsasDocument1.html#id71"
5451 coords="99,199,182,241" />
5452 <area alt="vamsasDocument1.tmp#id59" href="vamsasDocument1.html#id59"
5453 coords="174,261,379,317" />
5454 <area alt="vamsasDocument1.tmp#id66" href="vamsasDocument1.html#id66"
5455 coords="174,327,336,383" />
5456 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
5457 coords="174,393,336,449" /></map></div>
5461 <td class="firstColumn">
5462 <div class="floatLeft"><b>Properties</b></div>
5463 <div class="floatRight"><input id="button_properties_id58" type="image" src="images/button_minus.gif"
5465 onclick="switchState('properties_id58');"
5466 class="control" /></div>
5469 <div id="properties_id58" style="display:block">
5470 <table class="propertiesTable">
5472 <td class="firstColumn">content:
5475 <td><b>complex</b></td>
5478 <td class="firstColumn">minOccurs:
5484 <td class="firstColumn">maxOccurs:
5487 <td><b>unbounded</b></td>
5494 <td class="firstColumn"><b>Model</b></td>
5495 <td><b><a href="vamsasDocument1.html#id59" target="mainFrame"
5496 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5497 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:map*</a></b> , <b><a href="vamsasDocument1.html#id66" target="mainFrame"
5498 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5499 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
5500 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5501 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b></td>
5504 <td class="firstColumn"><b>Children</b></td>
5505 <td><b><a href="vamsasDocument1.html#id66" target="mainFrame"
5506 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5507 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b>, <b><a href="vamsasDocument1.html#id59" target="mainFrame"
5508 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5509 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:map</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
5510 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5511 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b></td>
5514 <td class="firstColumn">
5515 <div class="floatLeft"><b>Instance</b></div>
5516 <div class="floatRight"><input id="button_instance_id58" type="image" src="images/button_minus.gif" value="-"
5517 onclick="switchState('instance_id58');"
5518 class="control" /></div>
5521 <div id="instance_id58" style="display:block">
5522 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5523 class="preWrapContainer">
5525 <td width="100%"><pre><span class="tokenElement"><vamsas:dbRef</span><span class="tokenText"> </span><span class="tokenAttrName">accessionId=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">source=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">version=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
5526 </span><span class="tokenElement"><vamsas:map</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:map></span><span class="tokenIndent">
5527 </span><span class="tokenElement"><vamsas:link</span><span class="tokenText"> </span><span class="tokenAttrName">href=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:link></span><span class="tokenIndent">
5528 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
5529 </span><span class="tokenElement"></vamsas:dbRef></span></pre></td>
5536 <td class="firstColumn">
5537 <div class="floatLeft"><b>Attributes</b></div>
5538 <div class="floatRight"><input id="button_attributes_id58" type="image" src="images/button_minus.gif"
5540 onclick="switchState('attributes_id58');"
5541 class="control" /></div>
5544 <div id="attributes_id58" style="display:block">
5545 <table class="attributesTable">
5557 <td class="firstColumn"><b><a href="vamsasDocument1.html#id70" target="mainFrame" title="No namespace"
5558 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">accessionId</a></b></td>
5559 <td><b>xs:string</b></td>
5564 <div class="annotation">
5565 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5566 class="preWrapContainer">
5568 <td width="100%"><pre><span class="tokenText">TODO: make some specification</span><span class="tokenIndent">
5569 </span><span class="tokenText">of the database field from which this</span><span class="tokenIndent">
5570 </span><span class="tokenText">accessionId is taken from - should that be a</span><span class="tokenIndent">
5571 </span><span class="tokenText">special property of the dbRef object ?</span></pre></td>
5578 <td class="firstColumn"><b><a href="vamsasDocument1.html#id71" target="mainFrame" title="No namespace"
5579 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
5580 <td><b>xs:ID</b></td>
5585 <div class="annotation">
5586 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5587 class="preWrapContainer">
5589 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object</span><span class="tokenIndent">
5590 </span><span class="tokenText">referencing</span></pre></td>
5597 <td class="firstColumn"><b><a href="vamsasDocument1.html#id68" target="mainFrame" title="No namespace"
5598 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">source</a></b></td>
5599 <td><b>xs:string</b></td>
5604 <div class="annotation">
5605 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5606 class="preWrapContainer">
5608 <td width="100%"><pre><span class="tokenText">TODO Database Naming</span><span class="tokenIndent">
5609 </span><span class="tokenText">Convention: either start using LSID (so</span><span class="tokenIndent">
5610 </span><span class="tokenText">change type to URI) or leave this as an</span><span class="tokenIndent">
5611 </span><span class="tokenText">uncontrolled/unspecified string ID</span></pre></td>
5618 <td class="firstColumn"><b><a href="vamsasDocument1.html#id69" target="mainFrame" title="No namespace"
5619 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">version</a></b></td>
5620 <td><b>xs:string</b></td>
5625 <div class="annotation">
5626 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5627 class="preWrapContainer">
5629 <td width="100%"><pre><span class="tokenText">Version must be specified -</span></pre></td>
5640 <td class="firstColumn">
5641 <div class="floatLeft"><b>Source</b></div>
5642 <div class="floatRight"><input id="button_source_id58" type="image" src="images/button_minus.gif" value="-"
5643 onclick="switchState('source_id58');"
5644 class="control" /></div>
5647 <div id="source_id58" style="display:block">
5648 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5649 class="preWrapContainer">
5651 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dbRef"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5652 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5653 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Store a list of database references for this sequence record - with optional mapping from database sequence to the given sequence record</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5654 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
5655 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
5656 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5657 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
5658 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
5659 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5660 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5661 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">the local mapType maps from the parent sequence coordinate frame to the reference frame defined by the dbRef element. The mapped mapType is the mapped range defined on the dbRef element's reference frame. Conventionally, the unit attribute defaults to 1, or will be inferred from the local sequence's dictionary type and any dictionary type associated with the database being mapped to. However, it may be used to avoid ambiguity.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5662 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5663 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
5664 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
5665 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
5666 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenElement">/></span><span class="tokenIndent">
5667 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
5668 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
5669 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
5670 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
5671 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:link"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
5672 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
5673 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
5674 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"source"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5675 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5676 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO Database Naming Convention: either start using LSID (so change type to URI) or leave this as an uncontrolled/unspecified string ID</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5677 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5678 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5679 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"version"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5680 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5681 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Version must be specified -</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5682 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5683 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5684 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"accessionId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
5685 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5686 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: make some specification of the database field from which this accessionId is taken from - should that be a special property of the dbRef object ?</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5687 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5688 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5689 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
5690 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5691 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5692 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5693 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
5694 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
5695 </span><span class="tokenElement"></xs:element></span></pre></td>
5702 <td class="firstColumn"><b>Schema location</b></td>
5703 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
5708 <td class="rt_lineRight"></td>
5711 <td class="rt_cornerBottomLeft"></td>
5712 <td class="rt_lineBottom"></td>
5713 <td class="rt_cornerBottomRight"></td>
5715 </table><a id="id59"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id58" target="mainFrame"
5716 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5717 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>/<b><a href="vamsasDocument1.html#id51" target="mainFrame"
5718 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5719 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
5720 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5721 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:map</span></div>
5724 <td class="rt_cornerTopLeft"></td>
5725 <td class="rt_lineTop"></td>
5726 <td class="rt_cornerTopRight"></td>
5729 <td class="rt_lineLeft"></td>
5730 <td class="rt_content">
5731 <table class="component">
5734 <td class="firstColumn"><b>Namespace</b></td>
5735 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
5738 <td class="firstColumn">
5739 <div class="floatLeft"><b>Annotations</b></div>
5740 <div class="floatRight"><input id="button_annotations_id59" type="image" src="images/button_minus.gif"
5742 onclick="switchState('annotations_id59');"
5743 class="control" /></div>
5746 <div id="annotations_id59" style="display:block">
5747 <div class="annotation">
5748 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5749 class="preWrapContainer">
5751 <td width="100%"><pre><span class="tokenText">the local mapType maps from the parent</span><span class="tokenIndent">
5752 </span><span class="tokenText">sequence coordinate frame to the reference</span><span class="tokenIndent">
5753 </span><span class="tokenText">frame defined by the dbRef element.</span><span class="tokenIndent">
5754 </span><span class="tokenText">The mapped mapType is the mapped range defined</span><span class="tokenIndent">
5755 </span><span class="tokenText">on the dbRef element's reference frame.</span><span class="tokenIndent">
5756 </span><span class="tokenText">Conventionally, the unit attribute defaults to 1, or</span><span class="tokenIndent">
5757 </span><span class="tokenText">will be inferred from the local sequence's</span><span class="tokenIndent">
5758 </span><span class="tokenText">dictionary type and any dictionary type associated</span><span class="tokenIndent">
5759 </span><span class="tokenText">with the database being mapped to.</span><span class="tokenIndent">
5760 </span><span class="tokenText">However, it may be used to avoid ambiguity.</span></pre></td>
5768 <td class="firstColumn">
5769 <div class="floatLeft"><b>Diagram</b></div>
5770 <div class="floatRight"><input id="button_diagram_id59" type="image" src="images/button_minus.gif" value="-"
5771 onclick="switchState('diagram_id59');"
5772 class="control" /></div>
5774 <td class="diagram">
5775 <div id="diagram_id59" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html9.jpeg"
5776 usemap="#vamsasDocument_46_html9" /><map name="vamsasDocument_46_html9" id="vamsasDocument_46_html9">
5777 <area alt="vamsasDocument1.tmp#id61" href="vamsasDocument1.html#id61"
5778 coords="332,54,501,96" />
5779 <area alt="vamsasDocument1.tmp#id64" href="vamsasDocument1.html#id64"
5780 coords="332,106,501,148" />
5781 <area alt="vamsasDocument1.tmp#id60" href="vamsasDocument1.html#id60"
5782 coords="236,22,370,44" />
5783 <area alt="vamsasDocument1.tmp#id65" href="vamsasDocument1.html#id65"
5784 coords="245,201,328,243" /></map></div>
5788 <td class="firstColumn"><b>Type</b></td>
5789 <td>extension of <b><a href="vamsasDocument1.html#id60" target="mainFrame"
5790 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5791 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType</a></b></td>
5794 <td class="firstColumn"><b>Type hierarchy</b></td>
5797 <li><b><a href="vamsasDocument1.html#id60" target="mainFrame"
5798 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5799 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType</a></b></li>
5804 <td class="firstColumn">
5805 <div class="floatLeft"><b>Properties</b></div>
5806 <div class="floatRight"><input id="button_properties_id59" type="image" src="images/button_minus.gif"
5808 onclick="switchState('properties_id59');"
5809 class="control" /></div>
5812 <div id="properties_id59" style="display:block">
5813 <table class="propertiesTable">
5815 <td class="firstColumn">content:
5818 <td><b>complex</b></td>
5821 <td class="firstColumn">minOccurs:
5827 <td class="firstColumn">maxOccurs:
5830 <td><b>unbounded</b></td>
5837 <td class="firstColumn"><b>Model</b></td>
5838 <td><b><a href="vamsasDocument1.html#id61" target="mainFrame"
5839 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5840 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:local</a></b> , <b><a href="vamsasDocument1.html#id64" target="mainFrame"
5841 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5842 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapped</a></b></td>
5845 <td class="firstColumn"><b>Children</b></td>
5846 <td><b><a href="vamsasDocument1.html#id61" target="mainFrame"
5847 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5848 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:local</a></b>, <b><a href="vamsasDocument1.html#id64" target="mainFrame"
5849 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5850 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapped</a></b></td>
5853 <td class="firstColumn">
5854 <div class="floatLeft"><b>Instance</b></div>
5855 <div class="floatRight"><input id="button_instance_id59" type="image" src="images/button_minus.gif" value="-"
5856 onclick="switchState('instance_id59');"
5857 class="control" /></div>
5860 <div id="instance_id59" style="display:block">
5861 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5862 class="preWrapContainer">
5864 <td width="100%"><pre><span class="tokenElement"><vamsas:map</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
5865 </span><span class="tokenElement"><vamsas:local</span><span class="tokenText"> </span><span class="tokenAttrName">unit=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:local></span><span class="tokenIndent">
5866 </span><span class="tokenElement"><vamsas:mapped</span><span class="tokenText"> </span><span class="tokenAttrName">unit=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:mapped></span><span class="tokenIndent">
5867 </span><span class="tokenElement"></vamsas:map></span></pre></td>
5874 <td class="firstColumn">
5875 <div class="floatLeft"><b>Attributes</b></div>
5876 <div class="floatRight"><input id="button_attributes_id59" type="image" src="images/button_minus.gif"
5878 onclick="switchState('attributes_id59');"
5879 class="control" /></div>
5882 <div id="attributes_id59" style="display:block">
5883 <table class="attributesTable">
5895 <td class="firstColumn"><b><a href="vamsasDocument1.html#id65" target="mainFrame" title="No namespace"
5896 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
5897 <td><b>xs:ID</b></td>
5902 <div class="annotation"></div>
5910 <td class="firstColumn">
5911 <div class="floatLeft"><b>Source</b></div>
5912 <div class="floatRight"><input id="button_source_id59" type="image" src="images/button_minus.gif" value="-"
5913 onclick="switchState('source_id59');"
5914 class="control" /></div>
5917 <div id="source_id59" style="display:block">
5918 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
5919 class="preWrapContainer">
5921 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
5922 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
5923 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">the local mapType maps from the parent sequence coordinate frame to the reference frame defined by the dbRef element. The mapped mapType is the mapped range defined on the dbRef element's reference frame. Conventionally, the unit attribute defaults to 1, or will be inferred from the local sequence's dictionary type and any dictionary type associated with the database being mapped to. However, it may be used to avoid ambiguity.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
5924 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
5925 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
5926 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
5927 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
5928 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenElement">/></span><span class="tokenIndent">
5929 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
5930 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
5931 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
5932 </span><span class="tokenElement"></xs:element></span></pre></td>
5939 <td class="firstColumn"><b>Schema location</b></td>
5940 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
5945 <td class="rt_lineRight"></td>
5948 <td class="rt_cornerBottomLeft"></td>
5949 <td class="rt_lineBottom"></td>
5950 <td class="rt_cornerBottomRight"></td>
5952 </table><a id="id61"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id60" target="mainFrame"
5953 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
5954 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType</a></b>/vamsas:local</span></div>
5957 <td class="rt_cornerTopLeft"></td>
5958 <td class="rt_lineTop"></td>
5959 <td class="rt_cornerTopRight"></td>
5962 <td class="rt_lineLeft"></td>
5963 <td class="rt_content">
5964 <table class="component">
5967 <td class="firstColumn"><b>Namespace</b></td>
5968 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
5971 <td class="firstColumn">
5972 <div class="floatLeft"><b>Annotations</b></div>
5973 <div class="floatRight"><input id="button_annotations_id61" type="image" src="images/button_minus.gif"
5975 onclick="switchState('annotations_id61');"
5976 class="control" /></div>
5979 <div id="annotations_id61" style="display:block">
5980 <div class="annotation"></div>
5985 <td class="firstColumn">
5986 <div class="floatLeft"><b>Diagram</b></div>
5987 <div class="floatRight"><input id="button_diagram_id61" type="image" src="images/button_minus.gif" value="-"
5988 onclick="switchState('diagram_id61');"
5989 class="control" /></div>
5991 <td class="diagram">
5992 <div id="diagram_id61" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html49.jpeg"
5993 usemap="#vamsasDocument_46_html49" /><map name="vamsasDocument_46_html49" id="vamsasDocument_46_html49">
5994 <area alt="vamsasDocument1.tmp#id19" href="vamsasDocument1.html#id19"
5995 coords="294,78,353,116" />
5996 <area alt="vamsasDocument1.tmp#id21" href="vamsasDocument1.html#id21"
5997 coords="294,126,353,164" />
5998 <area alt="vamsasDocument1.tmp#id18" href="vamsasDocument1.html#id18"
5999 coords="212,46,354,68" />
6000 <area alt="vamsasDocument1.tmp#id63" href="vamsasDocument1.html#id63"
6001 coords="221,217,359,259" />
6002 <area alt="vamsasDocument1.tmp#id62" href="vamsasDocument1.html#id62"
6003 coords="200,11,365,33" /></map></div>
6007 <td class="firstColumn"><b>Type</b></td>
6008 <td><b><a href="vamsasDocument1.html#id62" target="mainFrame"
6009 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6010 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b></td>
6013 <td class="firstColumn"><b>Type hierarchy</b></td>
6016 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
6017 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6018 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
6019 <li><b><a href="vamsasDocument1.html#id62" target="mainFrame"
6020 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6021 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b></li>
6028 <td class="firstColumn">
6029 <div class="floatLeft"><b>Properties</b></div>
6030 <div class="floatRight"><input id="button_properties_id61" type="image" src="images/button_minus.gif"
6032 onclick="switchState('properties_id61');"
6033 class="control" /></div>
6036 <div id="properties_id61" style="display:block">
6037 <table class="propertiesTable">
6039 <td class="firstColumn">content:
6042 <td><b>complex</b></td>
6049 <td class="firstColumn"><b>Model</b></td>
6050 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
6051 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6052 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
6053 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6054 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b></td>
6057 <td class="firstColumn"><b>Children</b></td>
6058 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
6059 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6060 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
6061 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6062 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b></td>
6065 <td class="firstColumn">
6066 <div class="floatLeft"><b>Instance</b></div>
6067 <div class="floatRight"><input id="button_instance_id61" type="image" src="images/button_minus.gif" value="-"
6068 onclick="switchState('instance_id61');"
6069 class="control" /></div>
6072 <div id="instance_id61" style="display:block">
6073 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6074 class="preWrapContainer">
6076 <td width="100%"><pre><span class="tokenElement"><vamsas:local</span><span class="tokenText"> </span><span class="tokenAttrName">unit=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
6077 </span><span class="tokenElement"><vamsas:pos</span><span class="tokenText"> </span><span class="tokenAttrName">i=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:pos></span><span class="tokenIndent">
6078 </span><span class="tokenElement"><vamsas:seg</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">inclusive=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:seg></span><span class="tokenIndent">
6079 </span><span class="tokenElement"></vamsas:local></span></pre></td>
6086 <td class="firstColumn">
6087 <div class="floatLeft"><b>Attributes</b></div>
6088 <div class="floatRight"><input id="button_attributes_id61" type="image" src="images/button_minus.gif"
6090 onclick="switchState('attributes_id61');"
6091 class="control" /></div>
6094 <div id="attributes_id61" style="display:block">
6095 <table class="attributesTable">
6107 <td class="firstColumn"><b><a href="vamsasDocument1.html#id63" target="mainFrame" title="No namespace"
6108 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">unit</a></b></td>
6109 <td><b>xs:positiveInteger</b></td>
6114 <div class="annotation">
6115 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6116 class="preWrapContainer">
6118 <td width="100%"><pre><span class="tokenText">number of dictionary symbol widths involved in each</span><span class="tokenIndent">
6119 </span><span class="tokenText">mapped position on this sequence (for example, 3 for a dna sequence exon</span><span class="tokenIndent">
6120 </span><span class="tokenText">region that is being mapped to a protein sequence). This is optional,</span><span class="tokenIndent">
6121 </span><span class="tokenText">since the unit can be usually be inferred from the dictionary type of</span><span class="tokenIndent">
6122 </span><span class="tokenText">each sequence involved in the mapping.</span></pre></td>
6133 <td class="firstColumn">
6134 <div class="floatLeft"><b>Source</b></div>
6135 <div class="floatRight"><input id="button_source_id61" type="image" src="images/button_minus.gif" value="-"
6136 onclick="switchState('source_id61');"
6137 class="control" /></div>
6140 <div id="source_id61" style="display:block">
6141 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6142 class="preWrapContainer">
6144 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"local"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:mapRangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
6145 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6146 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenIndent">
6147 </span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6148 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6149 </span><span class="tokenElement"></xs:element></span></pre></td>
6156 <td class="firstColumn"><b>Schema location</b></td>
6157 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
6162 <td class="rt_lineRight"></td>
6165 <td class="rt_cornerBottomLeft"></td>
6166 <td class="rt_lineBottom"></td>
6167 <td class="rt_cornerBottomRight"></td>
6169 </table><a id="id64"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id60" target="mainFrame"
6170 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6171 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType</a></b>/vamsas:mapped</span></div>
6174 <td class="rt_cornerTopLeft"></td>
6175 <td class="rt_lineTop"></td>
6176 <td class="rt_cornerTopRight"></td>
6179 <td class="rt_lineLeft"></td>
6180 <td class="rt_content">
6181 <table class="component">
6184 <td class="firstColumn"><b>Namespace</b></td>
6185 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
6188 <td class="firstColumn">
6189 <div class="floatLeft"><b>Annotations</b></div>
6190 <div class="floatRight"><input id="button_annotations_id64" type="image" src="images/button_minus.gif"
6192 onclick="switchState('annotations_id64');"
6193 class="control" /></div>
6196 <div id="annotations_id64" style="display:block">
6197 <div class="annotation"></div>
6202 <td class="firstColumn">
6203 <div class="floatLeft"><b>Diagram</b></div>
6204 <div class="floatRight"><input id="button_diagram_id64" type="image" src="images/button_minus.gif" value="-"
6205 onclick="switchState('diagram_id64');"
6206 class="control" /></div>
6208 <td class="diagram">
6209 <div id="diagram_id64" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html34.jpeg"
6210 usemap="#vamsasDocument_46_html34" /><map name="vamsasDocument_46_html34" id="vamsasDocument_46_html34">
6211 <area alt="vamsasDocument1.tmp#id19" href="vamsasDocument1.html#id19"
6212 coords="294,78,353,116" />
6213 <area alt="vamsasDocument1.tmp#id21" href="vamsasDocument1.html#id21"
6214 coords="294,126,353,164" />
6215 <area alt="vamsasDocument1.tmp#id18" href="vamsasDocument1.html#id18"
6216 coords="212,46,354,68" />
6217 <area alt="vamsasDocument1.tmp#id63" href="vamsasDocument1.html#id63"
6218 coords="221,217,359,259" />
6219 <area alt="vamsasDocument1.tmp#id62" href="vamsasDocument1.html#id62"
6220 coords="200,11,365,33" /></map></div>
6224 <td class="firstColumn"><b>Type</b></td>
6225 <td><b><a href="vamsasDocument1.html#id62" target="mainFrame"
6226 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6227 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b></td>
6230 <td class="firstColumn"><b>Type hierarchy</b></td>
6233 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
6234 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6235 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
6236 <li><b><a href="vamsasDocument1.html#id62" target="mainFrame"
6237 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6238 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b></li>
6245 <td class="firstColumn">
6246 <div class="floatLeft"><b>Properties</b></div>
6247 <div class="floatRight"><input id="button_properties_id64" type="image" src="images/button_minus.gif"
6249 onclick="switchState('properties_id64');"
6250 class="control" /></div>
6253 <div id="properties_id64" style="display:block">
6254 <table class="propertiesTable">
6256 <td class="firstColumn">content:
6259 <td><b>complex</b></td>
6266 <td class="firstColumn"><b>Model</b></td>
6267 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
6268 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6269 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
6270 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6271 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b></td>
6274 <td class="firstColumn"><b>Children</b></td>
6275 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
6276 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6277 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
6278 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6279 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b></td>
6282 <td class="firstColumn">
6283 <div class="floatLeft"><b>Instance</b></div>
6284 <div class="floatRight"><input id="button_instance_id64" type="image" src="images/button_minus.gif" value="-"
6285 onclick="switchState('instance_id64');"
6286 class="control" /></div>
6289 <div id="instance_id64" style="display:block">
6290 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6291 class="preWrapContainer">
6293 <td width="100%"><pre><span class="tokenElement"><vamsas:mapped</span><span class="tokenText"> </span><span class="tokenAttrName">unit=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
6294 </span><span class="tokenElement"><vamsas:pos</span><span class="tokenText"> </span><span class="tokenAttrName">i=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:pos></span><span class="tokenIndent">
6295 </span><span class="tokenElement"><vamsas:seg</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">inclusive=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:seg></span><span class="tokenIndent">
6296 </span><span class="tokenElement"></vamsas:mapped></span></pre></td>
6303 <td class="firstColumn">
6304 <div class="floatLeft"><b>Attributes</b></div>
6305 <div class="floatRight"><input id="button_attributes_id64" type="image" src="images/button_minus.gif"
6307 onclick="switchState('attributes_id64');"
6308 class="control" /></div>
6311 <div id="attributes_id64" style="display:block">
6312 <table class="attributesTable">
6324 <td class="firstColumn"><b><a href="vamsasDocument1.html#id63" target="mainFrame" title="No namespace"
6325 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">unit</a></b></td>
6326 <td><b>xs:positiveInteger</b></td>
6331 <div class="annotation">
6332 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6333 class="preWrapContainer">
6335 <td width="100%"><pre><span class="tokenText">number of dictionary symbol widths involved in each</span><span class="tokenIndent">
6336 </span><span class="tokenText">mapped position on this sequence (for example, 3 for a dna sequence exon</span><span class="tokenIndent">
6337 </span><span class="tokenText">region that is being mapped to a protein sequence). This is optional,</span><span class="tokenIndent">
6338 </span><span class="tokenText">since the unit can be usually be inferred from the dictionary type of</span><span class="tokenIndent">
6339 </span><span class="tokenText">each sequence involved in the mapping.</span></pre></td>
6350 <td class="firstColumn">
6351 <div class="floatLeft"><b>Source</b></div>
6352 <div class="floatRight"><input id="button_source_id64" type="image" src="images/button_minus.gif" value="-"
6353 onclick="switchState('source_id64');"
6354 class="control" /></div>
6357 <div id="source_id64" style="display:block">
6358 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6359 class="preWrapContainer">
6361 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"mapped"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:mapRangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
6362 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6363 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenIndent">
6364 </span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6365 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6366 </span><span class="tokenElement"></xs:element></span></pre></td>
6373 <td class="firstColumn"><b>Schema location</b></td>
6374 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
6379 <td class="rt_lineRight"></td>
6382 <td class="rt_cornerBottomLeft"></td>
6383 <td class="rt_lineBottom"></td>
6384 <td class="rt_cornerBottomRight"></td>
6386 </table><a id="id66"></a><div class="componentTitle">Element <span class="qname">vamsas:link</span></div>
6389 <td class="rt_cornerTopLeft"></td>
6390 <td class="rt_lineTop"></td>
6391 <td class="rt_cornerTopRight"></td>
6394 <td class="rt_lineLeft"></td>
6395 <td class="rt_content">
6396 <table class="component">
6399 <td class="firstColumn"><b>Namespace</b></td>
6400 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
6403 <td class="firstColumn">
6404 <div class="floatLeft"><b>Diagram</b></div>
6405 <div class="floatRight"><input id="button_diagram_id66" type="image" src="images/button_minus.gif" value="-"
6406 onclick="switchState('diagram_id66');"
6407 class="control" /></div>
6409 <td class="diagram">
6410 <div id="diagram_id66" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html58.jpeg"
6411 usemap="#vamsasDocument_46_html58" /><map name="vamsasDocument_46_html58" id="vamsasDocument_46_html58">
6412 <area alt="vamsasDocument1.tmp#id67" href="vamsasDocument1.html#id67"
6413 coords="202,88,304,130" /></map></div>
6417 <td class="firstColumn"><b>Type</b></td>
6418 <td>extension of <b>xs:string</b></td>
6421 <td class="firstColumn">
6422 <div class="floatLeft"><b>Properties</b></div>
6423 <div class="floatRight"><input id="button_properties_id66" type="image" src="images/button_minus.gif"
6425 onclick="switchState('properties_id66');"
6426 class="control" /></div>
6429 <div id="properties_id66" style="display:block">
6430 <table class="propertiesTable">
6432 <td class="firstColumn">content:
6435 <td><b>complex</b></td>
6442 <td class="firstColumn">
6443 <div class="floatLeft"><b>Used by</b></div>
6444 <div class="floatRight"><input id="button_usedBy_id66" type="image" src="images/button_minus.gif" value="-"
6445 onclick="switchState('usedBy_id66');"
6446 class="control" /></div>
6449 <div id="usedBy_id66" style="display:block">
6450 <table class="usedByTable">
6452 <td class="firstColumn">Elements </td>
6453 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
6454 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6455 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b>, <b><a href="vamsasDocument1.html#id104" target="mainFrame"
6456 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6457 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence/vamsas:AlignmentSequenceAnnotation</a></b>, <b><a href="vamsasDocument1.html#id79" target="mainFrame"
6458 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6459 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:DataSetAnnotations</a></b>, <b><a href="vamsasDocument1.html#id58" target="mainFrame"
6460 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6461 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef</a></b></td>
6464 <td class="firstColumn">Complex Type </td>
6465 <td><b><a href="vamsasDocument1.html#id80" target="mainFrame"
6466 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6467 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
6474 <td class="firstColumn">
6475 <div class="floatLeft"><b>Attributes</b></div>
6476 <div class="floatRight"><input id="button_attributes_id66" type="image" src="images/button_minus.gif"
6478 onclick="switchState('attributes_id66');"
6479 class="control" /></div>
6482 <div id="attributes_id66" style="display:block">
6483 <table class="attributesTable">
6495 <td class="firstColumn"><b><a href="vamsasDocument1.html#id67" target="mainFrame" title="No namespace"
6496 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">href</a></b></td>
6497 <td><b>xs:anyURI</b></td>
6502 <div class="annotation">
6503 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6504 class="preWrapContainer">
6506 <td width="100%"><pre><span class="tokenText">The URI</span></pre></td>
6517 <td class="firstColumn">
6518 <div class="floatLeft"><b>Source</b></div>
6519 <div class="floatRight"><input id="button_source_id66" type="image" src="images/button_minus.gif" value="-"
6520 onclick="switchState('source_id66');"
6521 class="control" /></div>
6524 <div id="source_id66" style="display:block">
6525 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6526 class="preWrapContainer">
6528 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"link"</span><span class="tokenElement">></span><span class="tokenIndent">
6529 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
6530 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6531 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primitive labelled URI object</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6532 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6533 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
6534 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
6535 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"href"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:anyURI"</span><span class="tokenElement">></span><span class="tokenIndent">
6536 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6537 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">The URI</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6538 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6539 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
6540 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
6541 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
6542 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
6543 </span><span class="tokenElement"></xs:element></span></pre></td>
6550 <td class="firstColumn"><b>Schema location</b></td>
6551 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
6556 <td class="rt_lineRight"></td>
6559 <td class="rt_cornerBottomLeft"></td>
6560 <td class="rt_lineBottom"></td>
6561 <td class="rt_cornerBottomRight"></td>
6563 </table><a id="id72"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id51" target="mainFrame"
6564 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6565 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
6566 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6567 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:vxref</span></div>
6570 <td class="rt_cornerTopLeft"></td>
6571 <td class="rt_lineTop"></td>
6572 <td class="rt_cornerTopRight"></td>
6575 <td class="rt_lineLeft"></td>
6576 <td class="rt_content">
6577 <table class="component">
6580 <td class="firstColumn"><b>Namespace</b></td>
6581 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
6584 <td class="firstColumn">
6585 <div class="floatLeft"><b>Annotations</b></div>
6586 <div class="floatRight"><input id="button_annotations_id72" type="image" src="images/button_minus.gif"
6588 onclick="switchState('annotations_id72');"
6589 class="control" /></div>
6592 <div id="annotations_id72" style="display:block">
6593 <div class="annotation">
6594 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6595 class="preWrapContainer">
6597 <td width="100%"><pre><span class="tokenText">explicitly named cross reference to</span><span class="tokenIndent">
6598 </span><span class="tokenText">other objects in the document.</span></pre></td>
6606 <td class="firstColumn">
6607 <div class="floatLeft"><b>Diagram</b></div>
6608 <div class="floatRight"><input id="button_diagram_id72" type="image" src="images/button_minus.gif" value="-"
6609 onclick="switchState('diagram_id72');"
6610 class="control" /></div>
6612 <td class="diagram">
6613 <div id="diagram_id72" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html15.jpeg"
6614 usemap="#vamsasDocument_46_html15" /><map name="vamsasDocument_46_html15" id="vamsasDocument_46_html15">
6615 <area alt="vamsasDocument1.tmp#id42" href="vamsasDocument1.html#id42"
6616 coords="218,112,301,154" />
6617 <area alt="vamsasDocument1.tmp#id43" href="vamsasDocument1.html#id43"
6618 coords="218,164,321,206" />
6619 <area alt="vamsasDocument1.tmp#id41" href="vamsasDocument1.html#id41"
6620 coords="197,11,359,33" /></map></div>
6624 <td class="firstColumn"><b>Type</b></td>
6625 <td><b><a href="vamsasDocument1.html#id41" target="mainFrame"
6626 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6627 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:referenceType</a></b></td>
6630 <td class="firstColumn">
6631 <div class="floatLeft"><b>Properties</b></div>
6632 <div class="floatRight"><input id="button_properties_id72" type="image" src="images/button_minus.gif"
6634 onclick="switchState('properties_id72');"
6635 class="control" /></div>
6638 <div id="properties_id72" style="display:block">
6639 <table class="propertiesTable">
6641 <td class="firstColumn">content:
6644 <td><b>complex</b></td>
6647 <td class="firstColumn">minOccurs:
6653 <td class="firstColumn">maxOccurs:
6656 <td><b>unbounded</b></td>
6663 <td class="firstColumn">
6664 <div class="floatLeft"><b>Attributes</b></div>
6665 <div class="floatRight"><input id="button_attributes_id72" type="image" src="images/button_minus.gif"
6667 onclick="switchState('attributes_id72');"
6668 class="control" /></div>
6671 <div id="attributes_id72" style="display:block">
6672 <table class="attributesTable">
6684 <td class="firstColumn"><b><a href="vamsasDocument1.html#id42" target="mainFrame" title="No namespace"
6685 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
6686 <td><b>xs:ID</b></td>
6691 <div class="annotation">
6692 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6693 class="preWrapContainer">
6695 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
6702 <td class="firstColumn"><b><a href="vamsasDocument1.html#id43" target="mainFrame" title="No namespace"
6703 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">refs</a></b></td>
6704 <td><b>xs:IDREFS</b></td>
6709 <div class="annotation">
6710 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6711 class="preWrapContainer">
6713 <td width="100%"><pre><span class="tokenText">List of one or more vamsas object</span><span class="tokenIndent">
6714 </span><span class="tokenText">references</span></pre></td>
6725 <td class="firstColumn">
6726 <div class="floatLeft"><b>Source</b></div>
6727 <div class="floatRight"><input id="button_source_id72" type="image" src="images/button_minus.gif" value="-"
6728 onclick="switchState('source_id72');"
6729 class="control" /></div>
6732 <div id="source_id72" style="display:block">
6733 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6734 class="preWrapContainer">
6736 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"vxref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:referenceType"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
6737 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6738 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">explicitly named cross reference to other objects in the document.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6739 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6740 </span><span class="tokenElement"></xs:element></span></pre></td>
6747 <td class="firstColumn"><b>Schema location</b></td>
6748 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
6753 <td class="rt_lineRight"></td>
6756 <td class="rt_cornerBottomLeft"></td>
6757 <td class="rt_lineBottom"></td>
6758 <td class="rt_cornerBottomRight"></td>
6760 </table><a id="id75"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id50" target="mainFrame"
6761 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6762 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:sequenceMapping</span></div>
6765 <td class="rt_cornerTopLeft"></td>
6766 <td class="rt_lineTop"></td>
6767 <td class="rt_cornerTopRight"></td>
6770 <td class="rt_lineLeft"></td>
6771 <td class="rt_content">
6772 <table class="component">
6775 <td class="firstColumn"><b>Namespace</b></td>
6776 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
6779 <td class="firstColumn">
6780 <div class="floatLeft"><b>Diagram</b></div>
6781 <div class="floatRight"><input id="button_diagram_id75" type="image" src="images/button_minus.gif" value="-"
6782 onclick="switchState('diagram_id75');"
6783 class="control" /></div>
6785 <td class="diagram">
6786 <div id="diagram_id75" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html33.jpeg"
6787 usemap="#vamsasDocument_46_html33" /><map name="vamsasDocument_46_html33" id="vamsasDocument_46_html33">
6788 <area alt="vamsasDocument1.tmp#id61" href="vamsasDocument1.html#id61"
6789 coords="332,54,501,96" />
6790 <area alt="vamsasDocument1.tmp#id64" href="vamsasDocument1.html#id64"
6791 coords="332,106,501,148" />
6792 <area alt="vamsasDocument1.tmp#id60" href="vamsasDocument1.html#id60"
6793 coords="236,22,370,44" />
6794 <area alt="vamsasDocument1.tmp#id76" href="vamsasDocument1.html#id76"
6795 coords="245,201,341,243" />
6796 <area alt="vamsasDocument1.tmp#id77" href="vamsasDocument1.html#id77"
6797 coords="245,253,341,295" />
6798 <area alt="vamsasDocument1.tmp#id78" href="vamsasDocument1.html#id78"
6799 coords="245,305,328,347" />
6800 <area alt="vamsasDocument1.tmp#id5" href="vamsasDocument1.html#id5"
6801 coords="320,368,448,392" /></map></div>
6805 <td class="firstColumn"><b>Type</b></td>
6806 <td>extension of <b><a href="vamsasDocument1.html#id60" target="mainFrame"
6807 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6808 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType</a></b></td>
6811 <td class="firstColumn"><b>Type hierarchy</b></td>
6814 <li><b><a href="vamsasDocument1.html#id60" target="mainFrame"
6815 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6816 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType</a></b></li>
6821 <td class="firstColumn">
6822 <div class="floatLeft"><b>Properties</b></div>
6823 <div class="floatRight"><input id="button_properties_id75" type="image" src="images/button_minus.gif"
6825 onclick="switchState('properties_id75');"
6826 class="control" /></div>
6829 <div id="properties_id75" style="display:block">
6830 <table class="propertiesTable">
6832 <td class="firstColumn">content:
6835 <td><b>complex</b></td>
6838 <td class="firstColumn">minOccurs:
6844 <td class="firstColumn">maxOccurs:
6847 <td><b>unbounded</b></td>
6854 <td class="firstColumn"><b>Model</b></td>
6855 <td><b><a href="vamsasDocument1.html#id61" target="mainFrame"
6856 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6857 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:local</a></b> , <b><a href="vamsasDocument1.html#id64" target="mainFrame"
6858 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6859 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapped</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
6860 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6861 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
6864 <td class="firstColumn"><b>Children</b></td>
6865 <td><b><a href="vamsasDocument1.html#id5" target="mainFrame"
6866 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6867 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id61" target="mainFrame"
6868 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6869 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:local</a></b>, <b><a href="vamsasDocument1.html#id64" target="mainFrame"
6870 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
6871 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapped</a></b></td>
6874 <td class="firstColumn">
6875 <div class="floatLeft"><b>Instance</b></div>
6876 <div class="floatRight"><input id="button_instance_id75" type="image" src="images/button_minus.gif" value="-"
6877 onclick="switchState('instance_id75');"
6878 class="control" /></div>
6881 <div id="instance_id75" style="display:block">
6882 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6883 class="preWrapContainer">
6885 <td width="100%"><pre><span class="tokenElement"><vamsas:sequenceMapping</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">loc=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">map=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
6886 </span><span class="tokenElement"><vamsas:local</span><span class="tokenText"> </span><span class="tokenAttrName">unit=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:local></span><span class="tokenIndent">
6887 </span><span class="tokenElement"><vamsas:mapped</span><span class="tokenText"> </span><span class="tokenAttrName">unit=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:mapped></span><span class="tokenIndent">
6888 </span><span class="tokenElement"></vamsas:sequenceMapping></span></pre></td>
6895 <td class="firstColumn">
6896 <div class="floatLeft"><b>Attributes</b></div>
6897 <div class="floatRight"><input id="button_attributes_id75" type="image" src="images/button_minus.gif"
6899 onclick="switchState('attributes_id75');"
6900 class="control" /></div>
6903 <div id="attributes_id75" style="display:block">
6904 <table class="attributesTable">
6916 <td class="firstColumn"><b><a href="vamsasDocument1.html#id78" target="mainFrame" title="No namespace"
6917 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
6918 <td><b>xs:ID</b></td>
6923 <div class="annotation"></div>
6927 <td class="firstColumn"><b><a href="vamsasDocument1.html#id76" target="mainFrame" title="No namespace"
6928 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">loc</a></b></td>
6929 <td><b>xs:IDREF</b></td>
6934 <div class="annotation">
6935 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6936 class="preWrapContainer">
6938 <td width="100%"><pre><span class="tokenText">Object on which the local</span><span class="tokenIndent">
6939 </span><span class="tokenText">range is defined.</span></pre></td>
6946 <td class="firstColumn"><b><a href="vamsasDocument1.html#id77" target="mainFrame" title="No namespace"
6947 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">map</a></b></td>
6948 <td><b>xs:IDREF</b></td>
6953 <div class="annotation">
6954 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6955 class="preWrapContainer">
6957 <td width="100%"><pre><span class="tokenText">Object on which the mapped</span><span class="tokenIndent">
6958 </span><span class="tokenText">range is defined.</span></pre></td>
6969 <td class="firstColumn">
6970 <div class="floatLeft"><b>Source</b></div>
6971 <div class="floatRight"><input id="button_source_id75" type="image" src="images/button_minus.gif" value="-"
6972 onclick="switchState('source_id75');"
6973 class="control" /></div>
6976 <div id="source_id75" style="display:block">
6977 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
6978 class="preWrapContainer">
6980 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"sequenceMapping"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
6981 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
6982 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6983 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">A mapping between the specified 'local' and 'mapped' sequence coordinate frames. The step size between each coordinate frame depends on the sequence dictionary types, or alternatively specified in the optional unit attribute on each range element.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6984 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6985 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
6986 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
6987 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
6988 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
6989 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
6990 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"loc"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
6991 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6992 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object on which the local range is defined.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6993 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6994 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
6995 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
6996 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
6997 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object on which the mapped range is defined.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
6998 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
6999 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
7000 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
7001 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
7002 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
7003 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
7004 </span><span class="tokenElement"></xs:element></span></pre></td>
7011 <td class="firstColumn"><b>Schema location</b></td>
7012 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
7017 <td class="rt_lineRight"></td>
7020 <td class="rt_cornerBottomLeft"></td>
7021 <td class="rt_lineBottom"></td>
7022 <td class="rt_cornerBottomRight"></td>
7024 </table><a id="id79"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id50" target="mainFrame"
7025 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7026 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:DataSetAnnotations</span></div>
7029 <td class="rt_cornerTopLeft"></td>
7030 <td class="rt_lineTop"></td>
7031 <td class="rt_cornerTopRight"></td>
7034 <td class="rt_lineLeft"></td>
7035 <td class="rt_content">
7036 <table class="component">
7039 <td class="firstColumn"><b>Namespace</b></td>
7040 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
7043 <td class="firstColumn">
7044 <div class="floatLeft"><b>Diagram</b></div>
7045 <div class="floatRight"><input id="button_diagram_id79" type="image" src="images/button_minus.gif" value="-"
7046 onclick="switchState('diagram_id79');"
7047 class="control" /></div>
7049 <td class="diagram">
7050 <div id="diagram_id79" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html51.jpeg"
7051 usemap="#vamsasDocument_46_html51" /><map name="vamsasDocument_46_html51" id="vamsasDocument_46_html51">
7052 <area alt="vamsasDocument1.tmp#id19" href="vamsasDocument1.html#id19"
7053 coords="366,89,425,127" />
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7055 coords="366,137,425,175" />
7056 <area alt="vamsasDocument1.tmp#id18" href="vamsasDocument1.html#id18"
7057 coords="284,57,426,79" />
7058 <area alt="vamsasDocument1.tmp#id94" href="vamsasDocument1.html#id94"
7059 coords="293,228,376,270" />
7060 <area alt="vamsasDocument1.tmp#id95" href="vamsasDocument1.html#id95"
7061 coords="293,280,412,322" />
7062 <area alt="vamsasDocument1.tmp#id96" href="vamsasDocument1.html#id96"
7063 coords="293,332,398,392" />
7064 <area alt="vamsasDocument1.tmp#id97" href="vamsasDocument1.html#id97"
7065 coords="293,402,388,444" />
7066 <area alt="vamsasDocument1.tmp#id81" href="vamsasDocument1.html#id81"
7067 coords="368,464,463,506" />
7068 <area alt="vamsasDocument1.tmp#id82" href="vamsasDocument1.html#id82"
7069 coords="368,516,463,558" />
7070 <area alt="vamsasDocument1.tmp#id83" href="vamsasDocument1.html#id83"
7071 coords="368,568,463,610" />
7072 <area alt="vamsasDocument1.tmp#id84" href="vamsasDocument1.html#id84"
7073 coords="368,620,525,658" />
7074 <area alt="vamsasDocument1.tmp#id92" href="vamsasDocument1.html#id92"
7075 coords="368,668,524,724" />
7076 <area alt="vamsasDocument1.tmp#id66" href="vamsasDocument1.html#id66"
7077 coords="368,734,530,790" />
7078 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
7079 coords="368,800,530,856" />
7080 <area alt="vamsasDocument1.tmp#id80" href="vamsasDocument1.html#id80"
7081 coords="272,22,442,44" />
7082 <area alt="vamsasDocument1.tmp#id98" href="vamsasDocument1.html#id98"
7083 coords="281,909,384,951" />
7084 <area alt="vamsasDocument1.tmp#id5" href="vamsasDocument1.html#id5"
7085 coords="356,972,484,996" /></map></div>
7089 <td class="firstColumn"><b>Type</b></td>
7090 <td>extension of <b><a href="vamsasDocument1.html#id80" target="mainFrame"
7091 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7092 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
7095 <td class="firstColumn"><b>Type hierarchy</b></td>
7098 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
7099 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7100 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
7101 <li><b><a href="vamsasDocument1.html#id80" target="mainFrame"
7102 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7103 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></li>
7110 <td class="firstColumn">
7111 <div class="floatLeft"><b>Properties</b></div>
7112 <div class="floatRight"><input id="button_properties_id79" type="image" src="images/button_minus.gif"
7114 onclick="switchState('properties_id79');"
7115 class="control" /></div>
7118 <div id="properties_id79" style="display:block">
7119 <table class="propertiesTable">
7121 <td class="firstColumn">content:
7124 <td><b>complex</b></td>
7127 <td class="firstColumn">minOccurs:
7133 <td class="firstColumn">maxOccurs:
7136 <td><b>unbounded</b></td>
7143 <td class="firstColumn"><b>Model</b></td>
7144 <td>(<b><a href="vamsasDocument1.html#id19" target="mainFrame"
7145 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7146 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
7147 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7148 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b>) , <b><a href="vamsasDocument1.html#id81" target="mainFrame"
7149 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7150 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label{0,1}</a></b> , <b><a href="vamsasDocument1.html#id82" target="mainFrame"
7151 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7152 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id83" target="mainFrame"
7153 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7154 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status{0,1}</a></b> , <b><a href="vamsasDocument1.html#id84" target="mainFrame"
7155 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7156 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement*</a></b> , <b><a href="vamsasDocument1.html#id92" target="mainFrame"
7157 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7158 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score*</a></b> , <b><a href="vamsasDocument1.html#id66" target="mainFrame"
7159 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7160 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
7161 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7162 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
7163 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7164 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
7167 <td class="firstColumn"><b>Children</b></td>
7168 <td><b><a href="vamsasDocument1.html#id5" target="mainFrame"
7169 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7170 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id84" target="mainFrame"
7171 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7172 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>, <b><a href="vamsasDocument1.html#id82" target="mainFrame"
7173 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7174 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id81" target="mainFrame"
7175 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7176 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label</a></b>, <b><a href="vamsasDocument1.html#id66" target="mainFrame"
7177 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7178 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b>, <b><a href="vamsasDocument1.html#id19" target="mainFrame"
7179 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7180 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
7181 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7182 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id92" target="mainFrame"
7183 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7184 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
7185 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7186 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>, <b><a href="vamsasDocument1.html#id83" target="mainFrame"
7187 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7188 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status</a></b></td>
7191 <td class="firstColumn">
7192 <div class="floatLeft"><b>Instance</b></div>
7193 <div class="floatRight"><input id="button_instance_id79" type="image" src="images/button_minus.gif" value="-"
7194 onclick="switchState('instance_id79');"
7195 class="control" /></div>
7198 <div id="instance_id79" style="display:block">
7199 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7200 class="preWrapContainer">
7202 <td width="100%"><pre><span class="tokenElement"><vamsas:DataSetAnnotations</span><span class="tokenText"> </span><span class="tokenAttrName">group=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">seqRef=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
7203 </span><span class="tokenElement"><vamsas:pos</span><span class="tokenText"> </span><span class="tokenAttrName">i=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:pos></span><span class="tokenIndent">
7204 </span><span class="tokenElement"><vamsas:seg</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">inclusive=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:seg></span><span class="tokenIndent">
7205 </span><span class="tokenElement"></vamsas:DataSetAnnotations></span></pre></td>
7212 <td class="firstColumn">
7213 <div class="floatLeft"><b>Attributes</b></div>
7214 <div class="floatRight"><input id="button_attributes_id79" type="image" src="images/button_minus.gif"
7216 onclick="switchState('attributes_id79');"
7217 class="control" /></div>
7220 <div id="attributes_id79" style="display:block">
7221 <table class="attributesTable">
7233 <td class="firstColumn"><b><a href="vamsasDocument1.html#id96" target="mainFrame" title="No namespace"
7234 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">group</a></b></td>
7235 <td><b>xs:string</b></td>
7240 <div class="annotation">
7241 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7242 class="preWrapContainer">
7244 <td width="100%"><pre><span class="tokenText">Annotation with the same non-empty group name are grouped</span><span class="tokenIndent">
7245 </span><span class="tokenText">together</span></pre></td>
7252 <td class="firstColumn"><b><a href="vamsasDocument1.html#id94" target="mainFrame" title="No namespace"
7253 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
7254 <td><b>xs:ID</b></td>
7259 <div class="annotation">
7260 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7261 class="preWrapContainer">
7263 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
7270 <td class="firstColumn"><b><a href="vamsasDocument1.html#id95" target="mainFrame" title="No namespace"
7271 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
7272 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
7273 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7274 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
7279 <div class="annotation"></div>
7283 <td class="firstColumn"><b><a href="vamsasDocument1.html#id98" target="mainFrame" title="No namespace"
7284 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">seqRef</a></b></td>
7285 <td><b>xs:IDREFS</b></td>
7290 <div class="annotation">
7291 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7292 class="preWrapContainer">
7294 <td width="100%"><pre><span class="tokenText">annotation is associated with a</span><span class="tokenIndent">
7295 </span><span class="tokenText">particular dataset sequence</span></pre></td>
7302 <td class="firstColumn"><b><a href="vamsasDocument1.html#id97" target="mainFrame" title="No namespace"
7303 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
7304 <td><b>xs:string</b></td>
7309 <div class="annotation">
7310 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7311 class="preWrapContainer">
7313 <td width="100%"><pre><span class="tokenText">A Das Feature has both a type and a Type ID. We go the</span><span class="tokenIndent">
7314 </span><span class="tokenText">route of requiring the type string to be taken from a controlled</span><span class="tokenIndent">
7315 </span><span class="tokenText">vocabulary if an application expects others to make sense of it. The</span><span class="tokenIndent">
7316 </span><span class="tokenText">type may qualified - so uniprot:CHAIN is a valid type name, and</span><span class="tokenIndent">
7317 </span><span class="tokenText">considered distinct from someotherDB:CHAIN</span></pre></td>
7328 <td class="firstColumn">
7329 <div class="floatLeft"><b>Source</b></div>
7330 <div class="floatRight"><input id="button_source_id79" type="image" src="images/button_minus.gif" value="-"
7331 onclick="switchState('source_id79');"
7332 class="control" /></div>
7335 <div id="source_id79" style="display:block">
7336 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7337 class="preWrapContainer">
7339 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"DataSetAnnotations"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
7340 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
7341 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7342 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotate over positions and regions of a dataset sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7343 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7344 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
7345 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
7346 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
7347 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
7348 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
7349 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqRef"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
7350 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7351 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a particular dataset sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7352 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7353 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
7354 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
7355 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
7356 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
7357 </span><span class="tokenElement"></xs:element></span></pre></td>
7364 <td class="firstColumn"><b>Schema location</b></td>
7365 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
7370 <td class="rt_lineRight"></td>
7373 <td class="rt_cornerBottomLeft"></td>
7374 <td class="rt_lineBottom"></td>
7375 <td class="rt_cornerBottomRight"></td>
7377 </table><a id="id81"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
7378 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7379 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/vamsas:label</span></div>
7382 <td class="rt_cornerTopLeft"></td>
7383 <td class="rt_lineTop"></td>
7384 <td class="rt_cornerTopRight"></td>
7387 <td class="rt_lineLeft"></td>
7388 <td class="rt_content">
7389 <table class="component">
7392 <td class="firstColumn"><b>Namespace</b></td>
7393 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
7396 <td class="firstColumn">
7397 <div class="floatLeft"><b>Annotations</b></div>
7398 <div class="floatRight"><input id="button_annotations_id81" type="image" src="images/button_minus.gif"
7400 onclick="switchState('annotations_id81');"
7401 class="control" /></div>
7404 <div id="annotations_id81" style="display:block">
7405 <div class="annotation">
7406 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7407 class="preWrapContainer">
7409 <td width="100%"><pre><span class="tokenText">Short, meaningful name for the annotation - if this</span><span class="tokenIndent">
7410 </span><span class="tokenText">is absent, then the type string should be used in its place.</span></pre></td>
7418 <td class="firstColumn">
7419 <div class="floatLeft"><b>Diagram</b></div>
7420 <div class="floatRight"><input id="button_diagram_id81" type="image" src="images/button_minus.gif" value="-"
7421 onclick="switchState('diagram_id81');"
7422 class="control" /></div>
7424 <td class="diagram">
7425 <div id="diagram_id81" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html27.jpeg" /></div>
7429 <td class="firstColumn"><b>Type</b></td>
7430 <td><b>xs:string</b></td>
7433 <td class="firstColumn">
7434 <div class="floatLeft"><b>Properties</b></div>
7435 <div class="floatRight"><input id="button_properties_id81" type="image" src="images/button_minus.gif"
7437 onclick="switchState('properties_id81');"
7438 class="control" /></div>
7441 <div id="properties_id81" style="display:block">
7442 <table class="propertiesTable">
7444 <td class="firstColumn">content:
7447 <td><b>simple</b></td>
7450 <td class="firstColumn">minOccurs:
7460 <td class="firstColumn">
7461 <div class="floatLeft"><b>Source</b></div>
7462 <div class="floatRight"><input id="button_source_id81" type="image" src="images/button_minus.gif" value="-"
7463 onclick="switchState('source_id81');"
7464 class="control" /></div>
7467 <div id="source_id81" style="display:block">
7468 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7469 class="preWrapContainer">
7471 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"label"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
7472 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7473 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Short, meaningful name for the annotation - if this is absent, then the type string should be used in its place.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7474 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7475 </span><span class="tokenElement"></xs:element></span></pre></td>
7482 <td class="firstColumn"><b>Schema location</b></td>
7483 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
7488 <td class="rt_lineRight"></td>
7491 <td class="rt_cornerBottomLeft"></td>
7492 <td class="rt_lineBottom"></td>
7493 <td class="rt_cornerBottomRight"></td>
7495 </table><a id="id82"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
7496 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7497 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/vamsas:description</span></div>
7500 <td class="rt_cornerTopLeft"></td>
7501 <td class="rt_lineTop"></td>
7502 <td class="rt_cornerTopRight"></td>
7505 <td class="rt_lineLeft"></td>
7506 <td class="rt_content">
7507 <table class="component">
7510 <td class="firstColumn"><b>Namespace</b></td>
7511 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
7514 <td class="firstColumn">
7515 <div class="floatLeft"><b>Annotations</b></div>
7516 <div class="floatRight"><input id="button_annotations_id82" type="image" src="images/button_minus.gif"
7518 onclick="switchState('annotations_id82');"
7519 class="control" /></div>
7522 <div id="annotations_id82" style="display:block">
7523 <div class="annotation">
7524 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7525 class="preWrapContainer">
7527 <td width="100%"><pre><span class="tokenText">Human readable description of the annotation</span></pre></td>
7535 <td class="firstColumn">
7536 <div class="floatLeft"><b>Diagram</b></div>
7537 <div class="floatRight"><input id="button_diagram_id82" type="image" src="images/button_minus.gif" value="-"
7538 onclick="switchState('diagram_id82');"
7539 class="control" /></div>
7541 <td class="diagram">
7542 <div id="diagram_id82" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html19.jpeg" /></div>
7546 <td class="firstColumn"><b>Type</b></td>
7547 <td><b>xs:string</b></td>
7550 <td class="firstColumn">
7551 <div class="floatLeft"><b>Properties</b></div>
7552 <div class="floatRight"><input id="button_properties_id82" type="image" src="images/button_minus.gif"
7554 onclick="switchState('properties_id82');"
7555 class="control" /></div>
7558 <div id="properties_id82" style="display:block">
7559 <table class="propertiesTable">
7561 <td class="firstColumn">content:
7564 <td><b>simple</b></td>
7567 <td class="firstColumn">minOccurs:
7577 <td class="firstColumn">
7578 <div class="floatLeft"><b>Source</b></div>
7579 <div class="floatRight"><input id="button_source_id82" type="image" src="images/button_minus.gif" value="-"
7580 onclick="switchState('source_id82');"
7581 class="control" /></div>
7584 <div id="source_id82" style="display:block">
7585 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7586 class="preWrapContainer">
7588 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
7589 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7590 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Human readable description of the annotation</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7591 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7592 </span><span class="tokenElement"></xs:element></span></pre></td>
7599 <td class="firstColumn"><b>Schema location</b></td>
7600 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
7605 <td class="rt_lineRight"></td>
7608 <td class="rt_cornerBottomLeft"></td>
7609 <td class="rt_lineBottom"></td>
7610 <td class="rt_cornerBottomRight"></td>
7612 </table><a id="id83"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
7613 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7614 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/vamsas:status</span></div>
7617 <td class="rt_cornerTopLeft"></td>
7618 <td class="rt_lineTop"></td>
7619 <td class="rt_cornerTopRight"></td>
7622 <td class="rt_lineLeft"></td>
7623 <td class="rt_content">
7624 <table class="component">
7627 <td class="firstColumn"><b>Namespace</b></td>
7628 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
7631 <td class="firstColumn">
7632 <div class="floatLeft"><b>Annotations</b></div>
7633 <div class="floatRight"><input id="button_annotations_id83" type="image" src="images/button_minus.gif"
7635 onclick="switchState('annotations_id83');"
7636 class="control" /></div>
7639 <div id="annotations_id83" style="display:block">
7640 <div class="annotation">
7641 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7642 class="preWrapContainer">
7644 <td width="100%"><pre><span class="tokenText">TODO: specify this - we have considered taking the GO</span><span class="tokenIndent">
7645 </span><span class="tokenText">evidence codes as a model for assessing a measure of quality to an</span><span class="tokenIndent">
7646 </span><span class="tokenText">annotation.</span></pre></td>
7654 <td class="firstColumn">
7655 <div class="floatLeft"><b>Diagram</b></div>
7656 <div class="floatRight"><input id="button_diagram_id83" type="image" src="images/button_minus.gif" value="-"
7657 onclick="switchState('diagram_id83');"
7658 class="control" /></div>
7660 <td class="diagram">
7661 <div id="diagram_id83" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html14.jpeg" /></div>
7665 <td class="firstColumn"><b>Type</b></td>
7666 <td><b>xs:string</b></td>
7669 <td class="firstColumn">
7670 <div class="floatLeft"><b>Properties</b></div>
7671 <div class="floatRight"><input id="button_properties_id83" type="image" src="images/button_minus.gif"
7673 onclick="switchState('properties_id83');"
7674 class="control" /></div>
7677 <div id="properties_id83" style="display:block">
7678 <table class="propertiesTable">
7680 <td class="firstColumn">content:
7683 <td><b>simple</b></td>
7686 <td class="firstColumn">minOccurs:
7696 <td class="firstColumn">
7697 <div class="floatLeft"><b>Source</b></div>
7698 <div class="floatRight"><input id="button_source_id83" type="image" src="images/button_minus.gif" value="-"
7699 onclick="switchState('source_id83');"
7700 class="control" /></div>
7703 <div id="source_id83" style="display:block">
7704 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7705 class="preWrapContainer">
7707 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"status"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
7708 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7709 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: specify this - we have considered taking the GO evidence codes as a model for assessing a measure of quality to an annotation.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7710 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7711 </span><span class="tokenElement"></xs:element></span></pre></td>
7718 <td class="firstColumn"><b>Schema location</b></td>
7719 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
7724 <td class="rt_lineRight"></td>
7727 <td class="rt_cornerBottomLeft"></td>
7728 <td class="rt_lineBottom"></td>
7729 <td class="rt_cornerBottomRight"></td>
7731 </table><a id="id84"></a><div class="componentTitle">Element <span class="qname">vamsas:annotationElement</span></div>
7734 <td class="rt_cornerTopLeft"></td>
7735 <td class="rt_lineTop"></td>
7736 <td class="rt_cornerTopRight"></td>
7739 <td class="rt_lineLeft"></td>
7740 <td class="rt_content">
7741 <table class="component">
7744 <td class="firstColumn"><b>Namespace</b></td>
7745 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
7748 <td class="firstColumn">
7749 <div class="floatLeft"><b>Diagram</b></div>
7750 <div class="floatRight"><input id="button_diagram_id84" type="image" src="images/button_minus.gif" value="-"
7751 onclick="switchState('diagram_id84');"
7752 class="control" /></div>
7754 <td class="diagram">
7755 <div id="diagram_id84" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html56.jpeg"
7756 usemap="#vamsasDocument_46_html56" /><map name="vamsasDocument_46_html56" id="vamsasDocument_46_html56">
7757 <area alt="vamsasDocument1.tmp#id89" href="vamsasDocument1.html#id89"
7758 coords="156,43,257,85" />
7759 <area alt="vamsasDocument1.tmp#id90" href="vamsasDocument1.html#id90"
7760 coords="156,95,272,155" />
7761 <area alt="vamsasDocument1.tmp#id91" href="vamsasDocument1.html#id91"
7762 coords="156,165,239,207" />
7763 <area alt="vamsasDocument1.tmp#id85" href="vamsasDocument1.html#id85"
7764 coords="231,227,326,269" />
7765 <area alt="vamsasDocument1.tmp#id86" href="vamsasDocument1.html#id86"
7766 coords="231,279,393,335" />
7767 <area alt="vamsasDocument1.tmp#id88" href="vamsasDocument1.html#id88"
7768 coords="231,345,320,401" /></map></div>
7772 <td class="firstColumn">
7773 <div class="floatLeft"><b>Properties</b></div>
7774 <div class="floatRight"><input id="button_properties_id84" type="image" src="images/button_minus.gif"
7776 onclick="switchState('properties_id84');"
7777 class="control" /></div>
7780 <div id="properties_id84" style="display:block">
7781 <table class="propertiesTable">
7783 <td class="firstColumn">content:
7786 <td><b>complex</b></td>
7793 <td class="firstColumn">
7794 <div class="floatLeft"><b>Used by</b></div>
7795 <div class="floatRight"><input id="button_usedBy_id84" type="image" src="images/button_minus.gif" value="-"
7796 onclick="switchState('usedBy_id84');"
7797 class="control" /></div>
7800 <div id="usedBy_id84" style="display:block">
7801 <table class="usedByTable">
7803 <td class="firstColumn">Complex Type </td>
7804 <td><b><a href="vamsasDocument1.html#id80" target="mainFrame"
7805 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7806 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
7809 <td class="firstColumn">Elements </td>
7810 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
7811 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7812 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b>, <b><a href="vamsasDocument1.html#id104" target="mainFrame"
7813 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7814 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence/vamsas:AlignmentSequenceAnnotation</a></b>, <b><a href="vamsasDocument1.html#id79" target="mainFrame"
7815 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7816 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:DataSetAnnotations</a></b></td>
7823 <td class="firstColumn"><b>Model</b></td>
7824 <td><b><a href="vamsasDocument1.html#id85" target="mainFrame"
7825 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7826 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id86" target="mainFrame"
7827 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7828 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:glyph*</a></b> , <b><a href="vamsasDocument1.html#id88" target="mainFrame"
7829 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7830 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:value*</a></b></td>
7833 <td class="firstColumn"><b>Children</b></td>
7834 <td><b><a href="vamsasDocument1.html#id85" target="mainFrame"
7835 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7836 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id86" target="mainFrame"
7837 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7838 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:glyph</a></b>, <b><a href="vamsasDocument1.html#id88" target="mainFrame"
7839 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
7840 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:value</a></b></td>
7843 <td class="firstColumn">
7844 <div class="floatLeft"><b>Instance</b></div>
7845 <div class="floatRight"><input id="button_instance_id84" type="image" src="images/button_minus.gif" value="-"
7846 onclick="switchState('instance_id84');"
7847 class="control" /></div>
7850 <div id="instance_id84" style="display:block">
7851 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7852 class="preWrapContainer">
7854 <td width="100%"><pre><span class="tokenElement"><vamsas:annotationElement</span><span class="tokenText"> </span><span class="tokenAttrName">after=</span><span class="tokenAttrValue">"false"</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">position=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
7855 </span><span class="tokenElement"><vamsas:description</span><span class="tokenElement">></span><span class="tokenText">{0,1}</span><span class="tokenElement"></vamsas:description></span><span class="tokenIndent">
7856 </span><span class="tokenElement"><vamsas:glyph</span><span class="tokenText"> </span><span class="tokenAttrName">dict=</span><span class="tokenAttrValue">"utf8"</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:glyph></span><span class="tokenIndent">
7857 </span><span class="tokenElement"><vamsas:value</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:value></span><span class="tokenIndent">
7858 </span><span class="tokenElement"></vamsas:annotationElement></span></pre></td>
7865 <td class="firstColumn">
7866 <div class="floatLeft"><b>Attributes</b></div>
7867 <div class="floatRight"><input id="button_attributes_id84" type="image" src="images/button_minus.gif"
7869 onclick="switchState('attributes_id84');"
7870 class="control" /></div>
7873 <div id="attributes_id84" style="display:block">
7874 <table class="attributesTable">
7886 <td class="firstColumn"><b><a href="vamsasDocument1.html#id90" target="mainFrame" title="No namespace"
7887 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">after</a></b></td>
7888 <td><b>xs:boolean</b></td>
7893 <div class="annotation">
7894 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7895 class="preWrapContainer">
7897 <td width="100%"><pre><span class="tokenText">true means the annotation element appears between the</span><span class="tokenIndent">
7898 </span><span class="tokenText">specified position and the next</span></pre></td>
7905 <td class="firstColumn"><b><a href="vamsasDocument1.html#id91" target="mainFrame" title="No namespace"
7906 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
7907 <td><b>xs:ID</b></td>
7912 <div class="annotation">
7913 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7914 class="preWrapContainer">
7916 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
7923 <td class="firstColumn"><b><a href="vamsasDocument1.html#id89" target="mainFrame" title="No namespace"
7924 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">position</a></b></td>
7925 <td><b>xs:integer</b></td>
7930 <div class="annotation">
7931 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7932 class="preWrapContainer">
7934 <td width="100%"><pre><span class="tokenText">position with respect to the coordinate frame defined by a</span><span class="tokenIndent">
7935 </span><span class="tokenText">rangeType specification</span></pre></td>
7946 <td class="firstColumn">
7947 <div class="floatLeft"><b>Source</b></div>
7948 <div class="floatRight"><input id="button_source_id84" type="image" src="images/button_minus.gif" value="-"
7949 onclick="switchState('source_id84');"
7950 class="control" /></div>
7953 <div id="source_id84" style="display:block">
7954 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
7955 class="preWrapContainer">
7957 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"annotationElement"</span><span class="tokenElement">></span><span class="tokenIndent">
7958 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
7959 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7960 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">per-site symbolic and/or quantitative annotation</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7961 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">SecondaryStructure and display character (from Jalview) have been subsumed into the glyph element</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7962 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7963 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
7964 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
7965 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7966 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Free text at this position</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7967 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7968 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
7969 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"glyph"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
7970 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7971 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Discrete symbol - possibly graphically represented</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7972 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7973 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
7974 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
7975 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
7976 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dict"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"utf8"</span><span class="tokenElement">></span><span class="tokenIndent">
7977 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7978 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">specifies the symbol dictionary for this glyph - eg utf8 (the default), aasecstr_3 or kd_hydrophobicity - the content is not validated so applications must ensure they gracefully deal with invalid entries here</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7979 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: specify a minimum list of glyph dictionaries to get us started and provide a way for the vamsasClient to validate their content if regexes are specified</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7980 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7981 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
7982 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
7983 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
7984 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
7985 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
7986 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"value"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:float"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
7987 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7988 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Ordered set of float values - an application may treat the values together as a vector with common support for a set of annotation elements - but this is, again, not validated so applications should deal gracefully with varying numbers of dimensions</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7989 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7990 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
7991 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
7992 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"position"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:integer"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
7993 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7994 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">position with respect to the coordinate frame defined by a rangeType specification</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
7995 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
7996 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
7997 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"after"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"false"</span><span class="tokenElement">></span><span class="tokenIndent">
7998 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
7999 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">true means the annotation element appears between the specified position and the next</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8000 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8001 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8002 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
8003 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8004 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8005 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8006 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8007 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8008 </span><span class="tokenElement"></xs:element></span></pre></td>
8015 <td class="firstColumn"><b>Schema location</b></td>
8016 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
8021 <td class="rt_lineRight"></td>
8024 <td class="rt_cornerBottomLeft"></td>
8025 <td class="rt_lineBottom"></td>
8026 <td class="rt_cornerBottomRight"></td>
8028 </table><a id="id85"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id84" target="mainFrame"
8029 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8030 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/vamsas:description</span></div>
8033 <td class="rt_cornerTopLeft"></td>
8034 <td class="rt_lineTop"></td>
8035 <td class="rt_cornerTopRight"></td>
8038 <td class="rt_lineLeft"></td>
8039 <td class="rt_content">
8040 <table class="component">
8043 <td class="firstColumn"><b>Namespace</b></td>
8044 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
8047 <td class="firstColumn">
8048 <div class="floatLeft"><b>Annotations</b></div>
8049 <div class="floatRight"><input id="button_annotations_id85" type="image" src="images/button_minus.gif"
8051 onclick="switchState('annotations_id85');"
8052 class="control" /></div>
8055 <div id="annotations_id85" style="display:block">
8056 <div class="annotation">
8057 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8058 class="preWrapContainer">
8060 <td width="100%"><pre><span class="tokenText">Free text at this position</span></pre></td>
8068 <td class="firstColumn">
8069 <div class="floatLeft"><b>Diagram</b></div>
8070 <div class="floatRight"><input id="button_diagram_id85" type="image" src="images/button_minus.gif" value="-"
8071 onclick="switchState('diagram_id85');"
8072 class="control" /></div>
8074 <td class="diagram">
8075 <div id="diagram_id85" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html12.jpeg" /></div>
8079 <td class="firstColumn"><b>Type</b></td>
8080 <td><b>xs:string</b></td>
8083 <td class="firstColumn">
8084 <div class="floatLeft"><b>Properties</b></div>
8085 <div class="floatRight"><input id="button_properties_id85" type="image" src="images/button_minus.gif"
8087 onclick="switchState('properties_id85');"
8088 class="control" /></div>
8091 <div id="properties_id85" style="display:block">
8092 <table class="propertiesTable">
8094 <td class="firstColumn">content:
8097 <td><b>simple</b></td>
8100 <td class="firstColumn">minOccurs:
8110 <td class="firstColumn">
8111 <div class="floatLeft"><b>Source</b></div>
8112 <div class="floatRight"><input id="button_source_id85" type="image" src="images/button_minus.gif" value="-"
8113 onclick="switchState('source_id85');"
8114 class="control" /></div>
8117 <div id="source_id85" style="display:block">
8118 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8119 class="preWrapContainer">
8121 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
8122 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8123 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Free text at this position</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8124 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8125 </span><span class="tokenElement"></xs:element></span></pre></td>
8132 <td class="firstColumn"><b>Schema location</b></td>
8133 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
8138 <td class="rt_lineRight"></td>
8141 <td class="rt_cornerBottomLeft"></td>
8142 <td class="rt_lineBottom"></td>
8143 <td class="rt_cornerBottomRight"></td>
8145 </table><a id="id86"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id84" target="mainFrame"
8146 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8147 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/vamsas:glyph</span></div>
8150 <td class="rt_cornerTopLeft"></td>
8151 <td class="rt_lineTop"></td>
8152 <td class="rt_cornerTopRight"></td>
8155 <td class="rt_lineLeft"></td>
8156 <td class="rt_content">
8157 <table class="component">
8160 <td class="firstColumn"><b>Namespace</b></td>
8161 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
8164 <td class="firstColumn">
8165 <div class="floatLeft"><b>Annotations</b></div>
8166 <div class="floatRight"><input id="button_annotations_id86" type="image" src="images/button_minus.gif"
8168 onclick="switchState('annotations_id86');"
8169 class="control" /></div>
8172 <div id="annotations_id86" style="display:block">
8173 <div class="annotation">
8174 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8175 class="preWrapContainer">
8177 <td width="100%"><pre><span class="tokenText">Discrete symbol - possibly graphically represented</span></pre></td>
8185 <td class="firstColumn">
8186 <div class="floatLeft"><b>Diagram</b></div>
8187 <div class="floatRight"><input id="button_diagram_id86" type="image" src="images/button_minus.gif" value="-"
8188 onclick="switchState('diagram_id86');"
8189 class="control" /></div>
8191 <td class="diagram">
8192 <div id="diagram_id86" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html43.jpeg"
8193 usemap="#vamsasDocument_46_html43" /><map name="vamsasDocument_46_html43" id="vamsasDocument_46_html43">
8194 <area alt="vamsasDocument1.tmp#id87" href="vamsasDocument1.html#id87"
8195 coords="202,88,307,148" /></map></div>
8199 <td class="firstColumn"><b>Type</b></td>
8200 <td>extension of <b>xs:string</b></td>
8203 <td class="firstColumn">
8204 <div class="floatLeft"><b>Properties</b></div>
8205 <div class="floatRight"><input id="button_properties_id86" type="image" src="images/button_minus.gif"
8207 onclick="switchState('properties_id86');"
8208 class="control" /></div>
8211 <div id="properties_id86" style="display:block">
8212 <table class="propertiesTable">
8214 <td class="firstColumn">content:
8217 <td><b>complex</b></td>
8220 <td class="firstColumn">minOccurs:
8226 <td class="firstColumn">maxOccurs:
8229 <td><b>unbounded</b></td>
8236 <td class="firstColumn">
8237 <div class="floatLeft"><b>Attributes</b></div>
8238 <div class="floatRight"><input id="button_attributes_id86" type="image" src="images/button_minus.gif"
8240 onclick="switchState('attributes_id86');"
8241 class="control" /></div>
8244 <div id="attributes_id86" style="display:block">
8245 <table class="attributesTable">
8257 <td class="firstColumn"><b><a href="vamsasDocument1.html#id87" target="mainFrame" title="No namespace"
8258 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">dict</a></b></td>
8259 <td><b>xs:string</b></td>
8264 <div class="annotation">
8265 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8266 class="preWrapContainer">
8268 <td width="100%"><pre><span class="tokenText">specifies the symbol dictionary for this</span><span class="tokenIndent">
8269 </span><span class="tokenText">glyph - eg utf8 (the default), aasecstr_3 or</span><span class="tokenIndent">
8270 </span><span class="tokenText">kd_hydrophobicity - the content is not validated so</span><span class="tokenIndent">
8271 </span><span class="tokenText">applications must ensure they gracefully deal with</span><span class="tokenIndent">
8272 </span><span class="tokenText">invalid entries here</span></pre></td>
8275 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8276 class="preWrapContainer">
8278 <td width="100%"><pre><span class="tokenText">TODO: specify a minimum list of glyph</span><span class="tokenIndent">
8279 </span><span class="tokenText">dictionaries to get us started and provide a way for the</span><span class="tokenIndent">
8280 </span><span class="tokenText">vamsasClient to validate their content if regexes are</span><span class="tokenIndent">
8281 </span><span class="tokenText">specified</span></pre></td>
8292 <td class="firstColumn">
8293 <div class="floatLeft"><b>Source</b></div>
8294 <div class="floatRight"><input id="button_source_id86" type="image" src="images/button_minus.gif" value="-"
8295 onclick="switchState('source_id86');"
8296 class="control" /></div>
8299 <div id="source_id86" style="display:block">
8300 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8301 class="preWrapContainer">
8303 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"glyph"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8304 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8305 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Discrete symbol - possibly graphically represented</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8306 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8307 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
8308 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
8309 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
8310 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dict"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"utf8"</span><span class="tokenElement">></span><span class="tokenIndent">
8311 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8312 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">specifies the symbol dictionary for this glyph - eg utf8 (the default), aasecstr_3 or kd_hydrophobicity - the content is not validated so applications must ensure they gracefully deal with invalid entries here</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8313 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: specify a minimum list of glyph dictionaries to get us started and provide a way for the vamsasClient to validate their content if regexes are specified</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8314 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8315 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8316 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
8317 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
8318 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8319 </span><span class="tokenElement"></xs:element></span></pre></td>
8326 <td class="firstColumn"><b>Schema location</b></td>
8327 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
8332 <td class="rt_lineRight"></td>
8335 <td class="rt_cornerBottomLeft"></td>
8336 <td class="rt_lineBottom"></td>
8337 <td class="rt_cornerBottomRight"></td>
8339 </table><a id="id88"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id84" target="mainFrame"
8340 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8341 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/vamsas:value</span></div>
8344 <td class="rt_cornerTopLeft"></td>
8345 <td class="rt_lineTop"></td>
8346 <td class="rt_cornerTopRight"></td>
8349 <td class="rt_lineLeft"></td>
8350 <td class="rt_content">
8351 <table class="component">
8354 <td class="firstColumn"><b>Namespace</b></td>
8355 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
8358 <td class="firstColumn">
8359 <div class="floatLeft"><b>Annotations</b></div>
8360 <div class="floatRight"><input id="button_annotations_id88" type="image" src="images/button_minus.gif"
8362 onclick="switchState('annotations_id88');"
8363 class="control" /></div>
8366 <div id="annotations_id88" style="display:block">
8367 <div class="annotation">
8368 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8369 class="preWrapContainer">
8371 <td width="100%"><pre><span class="tokenText">Ordered set of float values - an application may treat</span><span class="tokenIndent">
8372 </span><span class="tokenText">the values together as a vector with common support for a set of</span><span class="tokenIndent">
8373 </span><span class="tokenText">annotation elements - but this is, again, not validated so applications</span><span class="tokenIndent">
8374 </span><span class="tokenText">should deal gracefully with varying numbers of dimensions</span></pre></td>
8382 <td class="firstColumn">
8383 <div class="floatLeft"><b>Diagram</b></div>
8384 <div class="floatRight"><input id="button_diagram_id88" type="image" src="images/button_minus.gif" value="-"
8385 onclick="switchState('diagram_id88');"
8386 class="control" /></div>
8388 <td class="diagram">
8389 <div id="diagram_id88" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html1.jpeg" /></div>
8393 <td class="firstColumn"><b>Type</b></td>
8394 <td><b>xs:float</b></td>
8397 <td class="firstColumn">
8398 <div class="floatLeft"><b>Properties</b></div>
8399 <div class="floatRight"><input id="button_properties_id88" type="image" src="images/button_minus.gif"
8401 onclick="switchState('properties_id88');"
8402 class="control" /></div>
8405 <div id="properties_id88" style="display:block">
8406 <table class="propertiesTable">
8408 <td class="firstColumn">content:
8411 <td><b>simple</b></td>
8414 <td class="firstColumn">minOccurs:
8420 <td class="firstColumn">maxOccurs:
8423 <td><b>unbounded</b></td>
8430 <td class="firstColumn">
8431 <div class="floatLeft"><b>Source</b></div>
8432 <div class="floatRight"><input id="button_source_id88" type="image" src="images/button_minus.gif" value="-"
8433 onclick="switchState('source_id88');"
8434 class="control" /></div>
8437 <div id="source_id88" style="display:block">
8438 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8439 class="preWrapContainer">
8441 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"value"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:float"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8442 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8443 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Ordered set of float values - an application may treat the values together as a vector with common support for a set of annotation elements - but this is, again, not validated so applications should deal gracefully with varying numbers of dimensions</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8444 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8445 </span><span class="tokenElement"></xs:element></span></pre></td>
8452 <td class="firstColumn"><b>Schema location</b></td>
8453 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
8458 <td class="rt_lineRight"></td>
8461 <td class="rt_cornerBottomLeft"></td>
8462 <td class="rt_lineBottom"></td>
8463 <td class="rt_cornerBottomRight"></td>
8465 </table><a id="id92"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
8466 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8467 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/vamsas:score</span></div>
8470 <td class="rt_cornerTopLeft"></td>
8471 <td class="rt_lineTop"></td>
8472 <td class="rt_cornerTopRight"></td>
8475 <td class="rt_lineLeft"></td>
8476 <td class="rt_content">
8477 <table class="component">
8480 <td class="firstColumn"><b>Namespace</b></td>
8481 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
8484 <td class="firstColumn">
8485 <div class="floatLeft"><b>Annotations</b></div>
8486 <div class="floatRight"><input id="button_annotations_id92" type="image" src="images/button_minus.gif"
8488 onclick="switchState('annotations_id92');"
8489 class="control" /></div>
8492 <div id="annotations_id92" style="display:block">
8493 <div class="annotation">
8494 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8495 class="preWrapContainer">
8497 <td width="100%"><pre><span class="tokenText">Ordered set of optionally named float values for the</span><span class="tokenIndent">
8498 </span><span class="tokenText">whole annotation</span></pre></td>
8506 <td class="firstColumn">
8507 <div class="floatLeft"><b>Diagram</b></div>
8508 <div class="floatRight"><input id="button_diagram_id92" type="image" src="images/button_minus.gif" value="-"
8509 onclick="switchState('diagram_id92');"
8510 class="control" /></div>
8512 <td class="diagram">
8513 <div id="diagram_id92" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html30.jpeg"
8514 usemap="#vamsasDocument_46_html30" /><map name="vamsasDocument_46_html30" id="vamsasDocument_46_html30">
8515 <area alt="vamsasDocument1.tmp#id93" href="vamsasDocument1.html#id93"
8516 coords="196,88,301,148" /></map></div>
8520 <td class="firstColumn"><b>Type</b></td>
8521 <td>extension of <b>xs:float</b></td>
8524 <td class="firstColumn">
8525 <div class="floatLeft"><b>Properties</b></div>
8526 <div class="floatRight"><input id="button_properties_id92" type="image" src="images/button_minus.gif"
8528 onclick="switchState('properties_id92');"
8529 class="control" /></div>
8532 <div id="properties_id92" style="display:block">
8533 <table class="propertiesTable">
8535 <td class="firstColumn">content:
8538 <td><b>complex</b></td>
8541 <td class="firstColumn">minOccurs:
8547 <td class="firstColumn">maxOccurs:
8550 <td><b>unbounded</b></td>
8557 <td class="firstColumn">
8558 <div class="floatLeft"><b>Attributes</b></div>
8559 <div class="floatRight"><input id="button_attributes_id92" type="image" src="images/button_minus.gif"
8561 onclick="switchState('attributes_id92');"
8562 class="control" /></div>
8565 <div id="attributes_id92" style="display:block">
8566 <table class="attributesTable">
8578 <td class="firstColumn"><b><a href="vamsasDocument1.html#id93" target="mainFrame" title="No namespace"
8579 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">name</a></b></td>
8580 <td><b>xs:string</b></td>
8585 <div class="annotation"></div>
8593 <td class="firstColumn">
8594 <div class="floatLeft"><b>Source</b></div>
8595 <div class="floatRight"><input id="button_source_id92" type="image" src="images/button_minus.gif" value="-"
8596 onclick="switchState('source_id92');"
8597 class="control" /></div>
8600 <div id="source_id92" style="display:block">
8601 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8602 class="preWrapContainer">
8604 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"score"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8605 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8606 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Ordered set of optionally named float values for the whole annotation</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8607 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8608 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
8609 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
8610 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:float"</span><span class="tokenElement">></span><span class="tokenIndent">
8611 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"score"</span><span class="tokenElement">/></span><span class="tokenIndent">
8612 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
8613 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
8614 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8615 </span><span class="tokenElement"></xs:element></span></pre></td>
8622 <td class="firstColumn"><b>Schema location</b></td>
8623 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
8628 <td class="rt_lineRight"></td>
8631 <td class="rt_cornerBottomLeft"></td>
8632 <td class="rt_lineBottom"></td>
8633 <td class="rt_cornerBottomRight"></td>
8635 </table><a id="id99"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id50" target="mainFrame"
8636 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8637 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:Alignment</span></div>
8640 <td class="rt_cornerTopLeft"></td>
8641 <td class="rt_lineTop"></td>
8642 <td class="rt_cornerTopRight"></td>
8645 <td class="rt_lineLeft"></td>
8646 <td class="rt_content">
8647 <table class="component">
8650 <td class="firstColumn"><b>Namespace</b></td>
8651 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
8654 <td class="firstColumn">
8655 <div class="floatLeft"><b>Diagram</b></div>
8656 <div class="floatRight"><input id="button_diagram_id99" type="image" src="images/button_minus.gif" value="-"
8657 onclick="switchState('diagram_id99');"
8658 class="control" /></div>
8660 <td class="diagram">
8661 <div id="diagram_id99" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html47.jpeg"
8662 usemap="#vamsasDocument_46_html47" /><map name="vamsasDocument_46_html47" id="vamsasDocument_46_html47">
8663 <area alt="vamsasDocument1.tmp#id108" href="vamsasDocument1.html#id108"
8664 coords="116,43,211,85" />
8665 <area alt="vamsasDocument1.tmp#id109" href="vamsasDocument1.html#id109"
8666 coords="116,95,222,137" />
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8669 <area alt="vamsasDocument1.tmp#id111" href="vamsasDocument1.html#id111"
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8671 <area alt="vamsasDocument1.tmp#id100" href="vamsasDocument1.html#id100"
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8673 <area alt="vamsasDocument1.tmp#id29" href="vamsasDocument1.html#id29"
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8684 <td class="firstColumn">
8685 <div class="floatLeft"><b>Properties</b></div>
8686 <div class="floatRight"><input id="button_properties_id99" type="image" src="images/button_minus.gif"
8688 onclick="switchState('properties_id99');"
8689 class="control" /></div>
8692 <div id="properties_id99" style="display:block">
8693 <table class="propertiesTable">
8695 <td class="firstColumn">content:
8698 <td><b>complex</b></td>
8701 <td class="firstColumn">minOccurs:
8707 <td class="firstColumn">maxOccurs:
8710 <td><b>unbounded</b></td>
8717 <td class="firstColumn"><b>Model</b></td>
8718 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
8719 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8720 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentAnnotation*</a></b> , <b><a href="vamsasDocument1.html#id29" target="mainFrame"
8721 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8722 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree*</a></b> , <b><a href="vamsasDocument1.html#id103" target="mainFrame"
8723 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8724 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:alignmentSequence+</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
8725 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8726 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
8727 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8728 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
8731 <td class="firstColumn"><b>Children</b></td>
8732 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
8733 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8734 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentAnnotation</a></b>, <b><a href="vamsasDocument1.html#id5" target="mainFrame"
8735 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8736 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id29" target="mainFrame"
8737 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8738 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>, <b><a href="vamsasDocument1.html#id103" target="mainFrame"
8739 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8740 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:alignmentSequence</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
8741 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8742 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b></td>
8745 <td class="firstColumn">
8746 <div class="floatLeft"><b>Instance</b></div>
8747 <div class="floatRight"><input id="button_instance_id99" type="image" src="images/button_minus.gif" value="-"
8748 onclick="switchState('instance_id99');"
8749 class="control" /></div>
8752 <div id="instance_id99" style="display:block">
8753 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8754 class="preWrapContainer">
8756 <td width="100%"><pre><span class="tokenElement"><vamsas:Alignment</span><span class="tokenText"> </span><span class="tokenAttrName">aligned=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">gapChar=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
8757 </span><span class="tokenElement"><vamsas:AlignmentAnnotation</span><span class="tokenText"> </span><span class="tokenAttrName">graph=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">group=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">seqrefs=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:AlignmentAnnotation></span><span class="tokenIndent">
8758 </span><span class="tokenElement"><vamsas:Tree</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:Tree></span><span class="tokenIndent">
8759 </span><span class="tokenElement"><vamsas:alignmentSequence</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">refid=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:alignmentSequence></span><span class="tokenIndent">
8760 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
8761 </span><span class="tokenElement"><vamsas:Provenance</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:Provenance></span><span class="tokenIndent">
8762 </span><span class="tokenElement"></vamsas:Alignment></span></pre></td>
8769 <td class="firstColumn">
8770 <div class="floatLeft"><b>Attributes</b></div>
8771 <div class="floatRight"><input id="button_attributes_id99" type="image" src="images/button_minus.gif"
8773 onclick="switchState('attributes_id99');"
8774 class="control" /></div>
8777 <div id="attributes_id99" style="display:block">
8778 <table class="attributesTable">
8790 <td class="firstColumn"><b><a href="vamsasDocument1.html#id109" target="mainFrame" title="No namespace"
8791 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">aligned</a></b></td>
8792 <td><b>xs:boolean</b></td>
8797 <div class="annotation"></div>
8801 <td class="firstColumn"><b><a href="vamsasDocument1.html#id108" target="mainFrame" title="No namespace"
8802 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">gapChar</a></b></td>
8803 <td><b>xs:string</b></td>
8808 <div class="annotation"></div>
8812 <td class="firstColumn"><b><a href="vamsasDocument1.html#id110" target="mainFrame" title="No namespace"
8813 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
8814 <td><b>xs:ID</b></td>
8819 <div class="annotation">
8820 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8821 class="preWrapContainer">
8823 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
8830 <td class="firstColumn"><b><a href="vamsasDocument1.html#id111" target="mainFrame" title="No namespace"
8831 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
8832 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
8833 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8834 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
8839 <div class="annotation"></div>
8847 <td class="firstColumn">
8848 <div class="floatLeft"><b>Source</b></div>
8849 <div class="floatRight"><input id="button_source_id99" type="image" src="images/button_minus.gif" value="-"
8850 onclick="switchState('source_id99');"
8851 class="control" /></div>
8854 <div id="source_id99" style="display:block">
8855 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
8856 class="preWrapContainer">
8858 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Alignment"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8859 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
8860 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
8861 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8862 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8863 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">This is annotation over the coordinate frame defined by all the columns in the alignment.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8864 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8865 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
8866 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
8867 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
8868 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
8869 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
8870 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
8871 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
8872 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8873 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8874 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8875 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8876 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqrefs"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
8877 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8878 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a range on a particular group of alignment sequences</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8879 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8880 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8881 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
8882 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
8883 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8884 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
8885 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Tree"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
8886 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"alignmentSequence"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8887 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
8888 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
8889 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:SequenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
8890 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
8891 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentSequenceAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8892 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
8893 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8894 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotate over positions and regions of the ungapped sequence in the context of the alignment</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8895 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
8896 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8897 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
8898 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
8899 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
8900 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
8901 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
8902 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
8903 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8904 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8905 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8906 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8907 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
8908 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
8909 </span><span class="tokenComment"><!--
8910 This replaces the flat list of sequenceFeatures.
8911 <xs:element name="AlignmentFeatures" minOccurs="0" maxOccurs="unbounded"><xs:complexType><xs:annotation>
8912 <xs:documentation>Annotate over positions and regions of the alignment</xs:documentation>
8913 </xs:annotation><xs:complexContent>
8914 <xs:extension base="vamsas:rangeFeature">
8915 <xs:attribute name="seqRef" type="xs:IDREF" use="optional">
8916 <xs:annotation><xs:documentation>annotation may be associated with a particular sequence lying within the same reference frame as the rangeType's objRef</xs:documentation></xs:annotation>
8917 </xs:attribute>
8918 </xs:extension>
8919 </xs:complexContent></xs:complexType></xs:element> --></span><span class="tokenIndent">
8920 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8921 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
8922 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
8923 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
8924 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8925 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8926 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8927 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8928 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"refid"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
8929 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8930 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Dataset Sequence from which this alignment sequence is taken from</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8931 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8932 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8933 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
8934 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
8935 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8936 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
8937 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
8938 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8939 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">typical properties may be additional alignment score objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8940 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8941 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
8942 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
8943 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
8944 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"gapChar"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
8945 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"aligned"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
8946 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
8947 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
8948 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
8949 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
8950 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
8951 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
8952 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
8953 </span><span class="tokenElement"></xs:element></span></pre></td>
8960 <td class="firstColumn"><b>Schema location</b></td>
8961 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
8966 <td class="rt_lineRight"></td>
8969 <td class="rt_cornerBottomLeft"></td>
8970 <td class="rt_lineBottom"></td>
8971 <td class="rt_cornerBottomRight"></td>
8973 </table><a id="id100"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id99" target="mainFrame"
8974 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8975 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
8976 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
8977 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:AlignmentAnnotation</span></div>
8980 <td class="rt_cornerTopLeft"></td>
8981 <td class="rt_lineTop"></td>
8982 <td class="rt_cornerTopRight"></td>
8985 <td class="rt_lineLeft"></td>
8986 <td class="rt_content">
8987 <table class="component">
8990 <td class="firstColumn"><b>Namespace</b></td>
8991 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
8994 <td class="firstColumn">
8995 <div class="floatLeft"><b>Annotations</b></div>
8996 <div class="floatRight"><input id="button_annotations_id100" type="image" src="images/button_minus.gif"
8998 onclick="switchState('annotations_id100');"
8999 class="control" /></div>
9002 <div id="annotations_id100" style="display:block">
9003 <div class="annotation">
9004 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9005 class="preWrapContainer">
9007 <td width="100%"><pre><span class="tokenText">This is annotation over the coordinate frame</span><span class="tokenIndent">
9008 </span><span class="tokenText">defined by all the columns in the alignment.</span></pre></td>
9016 <td class="firstColumn">
9017 <div class="floatLeft"><b>Diagram</b></div>
9018 <div class="floatRight"><input id="button_diagram_id100" type="image" src="images/button_minus.gif" value="-"
9019 onclick="switchState('diagram_id100');"
9020 class="control" /></div>
9022 <td class="diagram">
9023 <div id="diagram_id100" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html17.jpeg"
9024 usemap="#vamsasDocument_46_html17" /><map name="vamsasDocument_46_html17" id="vamsasDocument_46_html17">
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9028 coords="366,137,425,175" />
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9030 coords="284,57,426,79" />
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9046 coords="368,620,525,658" />
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9048 coords="368,668,524,724" />
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9056 coords="281,909,387,951" />
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9060 coords="356,1024,484,1048" /></map></div>
9064 <td class="firstColumn"><b>Type</b></td>
9065 <td>extension of <b><a href="vamsasDocument1.html#id80" target="mainFrame"
9066 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9067 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
9070 <td class="firstColumn"><b>Type hierarchy</b></td>
9073 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
9074 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9075 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
9076 <li><b><a href="vamsasDocument1.html#id80" target="mainFrame"
9077 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9078 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></li>
9085 <td class="firstColumn">
9086 <div class="floatLeft"><b>Properties</b></div>
9087 <div class="floatRight"><input id="button_properties_id100" type="image" src="images/button_minus.gif"
9089 onclick="switchState('properties_id100');"
9090 class="control" /></div>
9093 <div id="properties_id100" style="display:block">
9094 <table class="propertiesTable">
9096 <td class="firstColumn">content:
9099 <td><b>complex</b></td>
9102 <td class="firstColumn">minOccurs:
9108 <td class="firstColumn">maxOccurs:
9111 <td><b>unbounded</b></td>
9118 <td class="firstColumn"><b>Model</b></td>
9119 <td>(<b><a href="vamsasDocument1.html#id19" target="mainFrame"
9120 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9121 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
9122 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9123 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b>) , <b><a href="vamsasDocument1.html#id81" target="mainFrame"
9124 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9125 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label{0,1}</a></b> , <b><a href="vamsasDocument1.html#id82" target="mainFrame"
9126 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9127 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id83" target="mainFrame"
9128 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9129 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status{0,1}</a></b> , <b><a href="vamsasDocument1.html#id84" target="mainFrame"
9130 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9131 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement*</a></b> , <b><a href="vamsasDocument1.html#id92" target="mainFrame"
9132 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9133 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score*</a></b> , <b><a href="vamsasDocument1.html#id66" target="mainFrame"
9134 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9135 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
9136 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9137 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
9138 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9139 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
9142 <td class="firstColumn"><b>Children</b></td>
9143 <td><b><a href="vamsasDocument1.html#id5" target="mainFrame"
9144 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9145 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id84" target="mainFrame"
9146 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9147 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>, <b><a href="vamsasDocument1.html#id82" target="mainFrame"
9148 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9149 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id81" target="mainFrame"
9150 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9151 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label</a></b>, <b><a href="vamsasDocument1.html#id66" target="mainFrame"
9152 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9153 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b>, <b><a href="vamsasDocument1.html#id19" target="mainFrame"
9154 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9155 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
9156 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9157 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id92" target="mainFrame"
9158 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9159 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
9160 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9161 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>, <b><a href="vamsasDocument1.html#id83" target="mainFrame"
9162 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9163 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status</a></b></td>
9166 <td class="firstColumn">
9167 <div class="floatLeft"><b>Instance</b></div>
9168 <div class="floatRight"><input id="button_instance_id100" type="image" src="images/button_minus.gif" value="-"
9169 onclick="switchState('instance_id100');"
9170 class="control" /></div>
9173 <div id="instance_id100" style="display:block">
9174 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9175 class="preWrapContainer">
9177 <td width="100%"><pre><span class="tokenElement"><vamsas:AlignmentAnnotation</span><span class="tokenText"> </span><span class="tokenAttrName">graph=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">group=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">seqrefs=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
9178 </span><span class="tokenElement"><vamsas:pos</span><span class="tokenText"> </span><span class="tokenAttrName">i=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:pos></span><span class="tokenIndent">
9179 </span><span class="tokenElement"><vamsas:seg</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">inclusive=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:seg></span><span class="tokenIndent">
9180 </span><span class="tokenElement"></vamsas:AlignmentAnnotation></span></pre></td>
9187 <td class="firstColumn">
9188 <div class="floatLeft"><b>Attributes</b></div>
9189 <div class="floatRight"><input id="button_attributes_id100" type="image" src="images/button_minus.gif"
9191 onclick="switchState('attributes_id100');"
9192 class="control" /></div>
9195 <div id="attributes_id100" style="display:block">
9196 <table class="attributesTable">
9208 <td class="firstColumn"><b><a href="vamsasDocument1.html#id101" target="mainFrame" title="No namespace"
9209 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">graph</a></b></td>
9210 <td><b>xs:boolean</b></td>
9215 <div class="annotation">
9216 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9217 class="preWrapContainer">
9219 <td width="100%"><pre><span class="tokenText">TODO: decide if this flag is</span><span class="tokenIndent">
9220 </span><span class="tokenText">redundant - when true it would suggest that</span><span class="tokenIndent">
9221 </span><span class="tokenText">the annotationElement values together form a</span><span class="tokenIndent">
9222 </span><span class="tokenText">graph</span></pre></td>
9229 <td class="firstColumn"><b><a href="vamsasDocument1.html#id96" target="mainFrame" title="No namespace"
9230 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">group</a></b></td>
9231 <td><b>xs:string</b></td>
9236 <div class="annotation">
9237 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9238 class="preWrapContainer">
9240 <td width="100%"><pre><span class="tokenText">Annotation with the same non-empty group name are grouped</span><span class="tokenIndent">
9241 </span><span class="tokenText">together</span></pre></td>
9248 <td class="firstColumn"><b><a href="vamsasDocument1.html#id94" target="mainFrame" title="No namespace"
9249 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
9250 <td><b>xs:ID</b></td>
9255 <div class="annotation">
9256 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9257 class="preWrapContainer">
9259 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
9266 <td class="firstColumn"><b><a href="vamsasDocument1.html#id95" target="mainFrame" title="No namespace"
9267 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
9268 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
9269 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9270 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
9275 <div class="annotation"></div>
9279 <td class="firstColumn"><b><a href="vamsasDocument1.html#id102" target="mainFrame" title="No namespace"
9280 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">seqrefs</a></b></td>
9281 <td><b>xs:IDREFS</b></td>
9286 <div class="annotation">
9287 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9288 class="preWrapContainer">
9290 <td width="100%"><pre><span class="tokenText">annotation is associated with</span><span class="tokenIndent">
9291 </span><span class="tokenText">a range on a particular group of alignment</span><span class="tokenIndent">
9292 </span><span class="tokenText">sequences</span></pre></td>
9299 <td class="firstColumn"><b><a href="vamsasDocument1.html#id97" target="mainFrame" title="No namespace"
9300 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
9301 <td><b>xs:string</b></td>
9306 <div class="annotation">
9307 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9308 class="preWrapContainer">
9310 <td width="100%"><pre><span class="tokenText">A Das Feature has both a type and a Type ID. We go the</span><span class="tokenIndent">
9311 </span><span class="tokenText">route of requiring the type string to be taken from a controlled</span><span class="tokenIndent">
9312 </span><span class="tokenText">vocabulary if an application expects others to make sense of it. The</span><span class="tokenIndent">
9313 </span><span class="tokenText">type may qualified - so uniprot:CHAIN is a valid type name, and</span><span class="tokenIndent">
9314 </span><span class="tokenText">considered distinct from someotherDB:CHAIN</span></pre></td>
9325 <td class="firstColumn">
9326 <div class="floatLeft"><b>Source</b></div>
9327 <div class="floatRight"><input id="button_source_id100" type="image" src="images/button_minus.gif" value="-"
9328 onclick="switchState('source_id100');"
9329 class="control" /></div>
9332 <div id="source_id100" style="display:block">
9333 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9334 class="preWrapContainer">
9336 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
9337 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9338 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">This is annotation over the coordinate frame defined by all the columns in the alignment.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9339 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9340 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
9341 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
9342 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
9343 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
9344 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
9345 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
9346 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
9347 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9348 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9349 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9350 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
9351 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqrefs"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
9352 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9353 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a range on a particular group of alignment sequences</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9354 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9355 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
9356 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
9357 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
9358 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
9359 </span><span class="tokenElement"></xs:element></span></pre></td>
9366 <td class="firstColumn"><b>Schema location</b></td>
9367 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
9372 <td class="rt_lineRight"></td>
9375 <td class="rt_cornerBottomLeft"></td>
9376 <td class="rt_lineBottom"></td>
9377 <td class="rt_cornerBottomRight"></td>
9379 </table><a id="id103"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id99" target="mainFrame"
9380 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9381 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
9382 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9383 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:alignmentSequence</span></div>
9386 <td class="rt_cornerTopLeft"></td>
9387 <td class="rt_lineTop"></td>
9388 <td class="rt_cornerTopRight"></td>
9391 <td class="rt_lineLeft"></td>
9392 <td class="rt_content">
9393 <table class="component">
9396 <td class="firstColumn"><b>Namespace</b></td>
9397 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
9400 <td class="firstColumn">
9401 <div class="floatLeft"><b>Diagram</b></div>
9402 <div class="floatRight"><input id="button_diagram_id103" type="image" src="images/button_minus.gif" value="-"
9403 onclick="switchState('diagram_id103');"
9404 class="control" /></div>
9406 <td class="diagram">
9407 <div id="diagram_id103" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html11.jpeg"
9408 usemap="#vamsasDocument_46_html11" /><map name="vamsasDocument_46_html11" id="vamsasDocument_46_html11">
9409 <area alt="vamsasDocument1.tmp#id56" href="vamsasDocument1.html#id56"
9410 coords="286,87,387,129" />
9411 <area alt="vamsasDocument1.tmp#id57" href="vamsasDocument1.html#id57"
9412 coords="286,139,387,181" />
9413 <area alt="vamsasDocument1.tmp#id53" href="vamsasDocument1.html#id53"
9414 coords="361,201,456,243" />
9415 <area alt="vamsasDocument1.tmp#id54" href="vamsasDocument1.html#id54"
9416 coords="361,253,456,295" />
9417 <area alt="vamsasDocument1.tmp#id55" href="vamsasDocument1.html#id55"
9418 coords="361,305,456,347" />
9419 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
9420 coords="361,357,523,413" />
9421 <area alt="vamsasDocument1.tmp#id52" href="vamsasDocument1.html#id52"
9422 coords="265,22,428,44" />
9423 <area alt="vamsasDocument1.tmp#id106" href="vamsasDocument1.html#id106"
9424 coords="274,466,357,508" />
9425 <area alt="vamsasDocument1.tmp#id107" href="vamsasDocument1.html#id107"
9426 coords="274,518,370,560" />
9427 <area alt="vamsasDocument1.tmp#id104" href="vamsasDocument1.html#id104"
9428 coords="349,580,590,636" /></map></div>
9432 <td class="firstColumn"><b>Type</b></td>
9433 <td>extension of <b><a href="vamsasDocument1.html#id52" target="mainFrame"
9434 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9435 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b></td>
9438 <td class="firstColumn"><b>Type hierarchy</b></td>
9441 <li><b><a href="vamsasDocument1.html#id52" target="mainFrame"
9442 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9443 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b></li>
9448 <td class="firstColumn">
9449 <div class="floatLeft"><b>Properties</b></div>
9450 <div class="floatRight"><input id="button_properties_id103" type="image" src="images/button_minus.gif"
9452 onclick="switchState('properties_id103');"
9453 class="control" /></div>
9456 <div id="properties_id103" style="display:block">
9457 <table class="propertiesTable">
9459 <td class="firstColumn">content:
9462 <td><b>complex</b></td>
9465 <td class="firstColumn">maxOccurs:
9468 <td><b>unbounded</b></td>
9475 <td class="firstColumn"><b>Model</b></td>
9476 <td><b><a href="vamsasDocument1.html#id53" target="mainFrame"
9477 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9478 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequence</a></b> , <b><a href="vamsasDocument1.html#id54" target="mainFrame"
9479 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9480 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b> , <b><a href="vamsasDocument1.html#id55" target="mainFrame"
9481 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9482 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
9483 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9484 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id104" target="mainFrame"
9485 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9486 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentSequenceAnnotation*</a></b></td>
9489 <td class="firstColumn"><b>Children</b></td>
9490 <td><b><a href="vamsasDocument1.html#id104" target="mainFrame"
9491 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9492 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentSequenceAnnotation</a></b>, <b><a href="vamsasDocument1.html#id55" target="mainFrame"
9493 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9494 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id54" target="mainFrame"
9495 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9496 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
9497 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9498 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id53" target="mainFrame"
9499 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9500 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequence</a></b></td>
9503 <td class="firstColumn">
9504 <div class="floatLeft"><b>Instance</b></div>
9505 <div class="floatRight"><input id="button_instance_id103" type="image" src="images/button_minus.gif" value="-"
9506 onclick="switchState('instance_id103');"
9507 class="control" /></div>
9510 <div id="instance_id103" style="display:block">
9511 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9512 class="preWrapContainer">
9514 <td width="100%"><pre><span class="tokenElement"><vamsas:alignmentSequence</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">refid=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
9515 </span><span class="tokenElement"><vamsas:sequence</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:sequence></span><span class="tokenIndent">
9516 </span><span class="tokenElement"><vamsas:name</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:name></span><span class="tokenIndent">
9517 </span><span class="tokenElement"><vamsas:description</span><span class="tokenElement">></span><span class="tokenText">{0,1}</span><span class="tokenElement"></vamsas:description></span><span class="tokenIndent">
9518 </span><span class="tokenElement"><vamsas:property</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{0,unbounded}</span><span class="tokenElement"></vamsas:property></span><span class="tokenIndent">
9519 </span><span class="tokenElement"></vamsas:alignmentSequence></span></pre></td>
9526 <td class="firstColumn">
9527 <div class="floatLeft"><b>Attributes</b></div>
9528 <div class="floatRight"><input id="button_attributes_id103" type="image" src="images/button_minus.gif"
9530 onclick="switchState('attributes_id103');"
9531 class="control" /></div>
9534 <div id="attributes_id103" style="display:block">
9535 <table class="attributesTable">
9547 <td class="firstColumn"><b><a href="vamsasDocument1.html#id57" target="mainFrame" title="No namespace"
9548 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">end</a></b></td>
9549 <td><b>xs:integer</b></td>
9554 <div class="annotation"></div>
9558 <td class="firstColumn"><b><a href="vamsasDocument1.html#id106" target="mainFrame" title="No namespace"
9559 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
9560 <td><b>xs:ID</b></td>
9565 <div class="annotation">
9566 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9567 class="preWrapContainer">
9569 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object</span><span class="tokenIndent">
9570 </span><span class="tokenText">referencing</span></pre></td>
9577 <td class="firstColumn"><b><a href="vamsasDocument1.html#id107" target="mainFrame" title="No namespace"
9578 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">refid</a></b></td>
9579 <td><b>xs:IDREF</b></td>
9584 <div class="annotation">
9585 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9586 class="preWrapContainer">
9588 <td width="100%"><pre><span class="tokenText">Dataset Sequence from which</span><span class="tokenIndent">
9589 </span><span class="tokenText">this alignment sequence is taken from</span></pre></td>
9596 <td class="firstColumn"><b><a href="vamsasDocument1.html#id56" target="mainFrame" title="No namespace"
9597 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">start</a></b></td>
9598 <td><b>xs:integer</b></td>
9603 <div class="annotation"></div>
9611 <td class="firstColumn">
9612 <div class="floatLeft"><b>Source</b></div>
9613 <div class="floatRight"><input id="button_source_id103" type="image" src="images/button_minus.gif" value="-"
9614 onclick="switchState('source_id103');"
9615 class="control" /></div>
9618 <div id="source_id103" style="display:block">
9619 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9620 class="preWrapContainer">
9622 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"alignmentSequence"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
9623 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
9624 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
9625 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:SequenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
9626 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
9627 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentSequenceAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
9628 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
9629 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9630 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotate over positions and regions of the ungapped sequence in the context of the alignment</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9631 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
9632 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9633 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
9634 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
9635 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
9636 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
9637 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
9638 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
9639 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9640 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9641 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9642 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
9643 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
9644 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
9645 </span><span class="tokenComment"><!--
9646 This replaces the flat list of sequenceFeatures.
9647 <xs:element name="AlignmentFeatures" minOccurs="0" maxOccurs="unbounded"><xs:complexType><xs:annotation>
9648 <xs:documentation>Annotate over positions and regions of the alignment</xs:documentation>
9649 </xs:annotation><xs:complexContent>
9650 <xs:extension base="vamsas:rangeFeature">
9651 <xs:attribute name="seqRef" type="xs:IDREF" use="optional">
9652 <xs:annotation><xs:documentation>annotation may be associated with a particular sequence lying within the same reference frame as the rangeType's objRef</xs:documentation></xs:annotation>
9653 </xs:attribute>
9654 </xs:extension>
9655 </xs:complexContent></xs:complexType></xs:element> --></span><span class="tokenIndent">
9656 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
9657 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
9658 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
9659 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
9660 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9661 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9662 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9663 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
9664 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"refid"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
9665 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
9666 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Dataset Sequence from which this alignment sequence is taken from</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
9667 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
9668 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
9669 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
9670 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
9671 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
9672 </span><span class="tokenElement"></xs:element></span></pre></td>
9679 <td class="firstColumn"><b>Schema location</b></td>
9680 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
9685 <td class="rt_lineRight"></td>
9688 <td class="rt_cornerBottomLeft"></td>
9689 <td class="rt_lineBottom"></td>
9690 <td class="rt_cornerBottomRight"></td>
9692 </table><a id="id104"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id103" target="mainFrame"
9693 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9694 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:alignmentSequence</a></b>/<b><a href="vamsasDocument1.html#id99" target="mainFrame"
9695 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9696 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
9697 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9698 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/vamsas:AlignmentSequenceAnnotation</span></div>
9701 <td class="rt_cornerTopLeft"></td>
9702 <td class="rt_lineTop"></td>
9703 <td class="rt_cornerTopRight"></td>
9706 <td class="rt_lineLeft"></td>
9707 <td class="rt_content">
9708 <table class="component">
9711 <td class="firstColumn"><b>Namespace</b></td>
9712 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
9715 <td class="firstColumn">
9716 <div class="floatLeft"><b>Diagram</b></div>
9717 <div class="floatRight"><input id="button_diagram_id104" type="image" src="images/button_minus.gif" value="-"
9718 onclick="switchState('diagram_id104');"
9719 class="control" /></div>
9721 <td class="diagram">
9722 <div id="diagram_id104" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html32.jpeg"
9723 usemap="#vamsasDocument_46_html32" /><map name="vamsasDocument_46_html32" id="vamsasDocument_46_html32">
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9725 coords="366,89,425,127" />
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9745 coords="368,620,525,658" />
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9747 coords="368,668,524,724" />
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9749 coords="368,734,530,790" />
9750 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
9751 coords="368,800,530,856" />
9752 <area alt="vamsasDocument1.tmp#id80" href="vamsasDocument1.html#id80"
9753 coords="272,22,442,44" />
9754 <area alt="vamsasDocument1.tmp#id105" href="vamsasDocument1.html#id105"
9755 coords="281,909,387,951" />
9756 <area alt="vamsasDocument1.tmp#id5" href="vamsasDocument1.html#id5"
9757 coords="356,972,484,996" /></map></div>
9761 <td class="firstColumn"><b>Type</b></td>
9762 <td>extension of <b><a href="vamsasDocument1.html#id80" target="mainFrame"
9763 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9764 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
9767 <td class="firstColumn"><b>Type hierarchy</b></td>
9770 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
9771 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9772 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
9773 <li><b><a href="vamsasDocument1.html#id80" target="mainFrame"
9774 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9775 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></li>
9782 <td class="firstColumn">
9783 <div class="floatLeft"><b>Properties</b></div>
9784 <div class="floatRight"><input id="button_properties_id104" type="image" src="images/button_minus.gif"
9786 onclick="switchState('properties_id104');"
9787 class="control" /></div>
9790 <div id="properties_id104" style="display:block">
9791 <table class="propertiesTable">
9793 <td class="firstColumn">content:
9796 <td><b>complex</b></td>
9799 <td class="firstColumn">minOccurs:
9805 <td class="firstColumn">maxOccurs:
9808 <td><b>unbounded</b></td>
9815 <td class="firstColumn"><b>Model</b></td>
9816 <td>(<b><a href="vamsasDocument1.html#id19" target="mainFrame"
9817 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9818 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
9819 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9820 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b>) , <b><a href="vamsasDocument1.html#id81" target="mainFrame"
9821 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9822 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label{0,1}</a></b> , <b><a href="vamsasDocument1.html#id82" target="mainFrame"
9823 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9824 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id83" target="mainFrame"
9825 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9826 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status{0,1}</a></b> , <b><a href="vamsasDocument1.html#id84" target="mainFrame"
9827 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9828 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement*</a></b> , <b><a href="vamsasDocument1.html#id92" target="mainFrame"
9829 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9830 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score*</a></b> , <b><a href="vamsasDocument1.html#id66" target="mainFrame"
9831 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9832 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
9833 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9834 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b> , <b><a href="vamsasDocument1.html#id5" target="mainFrame"
9835 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9836 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b></td>
9839 <td class="firstColumn"><b>Children</b></td>
9840 <td><b><a href="vamsasDocument1.html#id5" target="mainFrame"
9841 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9842 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>, <b><a href="vamsasDocument1.html#id84" target="mainFrame"
9843 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9844 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>, <b><a href="vamsasDocument1.html#id82" target="mainFrame"
9845 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9846 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id81" target="mainFrame"
9847 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9848 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label</a></b>, <b><a href="vamsasDocument1.html#id66" target="mainFrame"
9849 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9850 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b>, <b><a href="vamsasDocument1.html#id19" target="mainFrame"
9851 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9852 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
9853 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9854 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id92" target="mainFrame"
9855 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9856 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
9857 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9858 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>, <b><a href="vamsasDocument1.html#id83" target="mainFrame"
9859 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9860 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status</a></b></td>
9863 <td class="firstColumn">
9864 <div class="floatLeft"><b>Instance</b></div>
9865 <div class="floatRight"><input id="button_instance_id104" type="image" src="images/button_minus.gif" value="-"
9866 onclick="switchState('instance_id104');"
9867 class="control" /></div>
9870 <div id="instance_id104" style="display:block">
9871 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9872 class="preWrapContainer">
9874 <td width="100%"><pre><span class="tokenElement"><vamsas:AlignmentSequenceAnnotation</span><span class="tokenText"> </span><span class="tokenAttrName">graph=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">group=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">modifiable=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
9875 </span><span class="tokenElement"><vamsas:pos</span><span class="tokenText"> </span><span class="tokenAttrName">i=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:pos></span><span class="tokenIndent">
9876 </span><span class="tokenElement"><vamsas:seg</span><span class="tokenText"> </span><span class="tokenAttrName">end=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">inclusive=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">start=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenText">{1,unbounded}</span><span class="tokenElement"></vamsas:seg></span><span class="tokenIndent">
9877 </span><span class="tokenElement"></vamsas:AlignmentSequenceAnnotation></span></pre></td>
9884 <td class="firstColumn">
9885 <div class="floatLeft"><b>Attributes</b></div>
9886 <div class="floatRight"><input id="button_attributes_id104" type="image" src="images/button_minus.gif"
9888 onclick="switchState('attributes_id104');"
9889 class="control" /></div>
9892 <div id="attributes_id104" style="display:block">
9893 <table class="attributesTable">
9905 <td class="firstColumn"><b><a href="vamsasDocument1.html#id105" target="mainFrame" title="No namespace"
9906 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">graph</a></b></td>
9907 <td><b>xs:boolean</b></td>
9912 <div class="annotation">
9913 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9914 class="preWrapContainer">
9916 <td width="100%"><pre><span class="tokenText">TODO:</span><span class="tokenIndent">
9917 </span><span class="tokenText">decide if this flag is</span><span class="tokenIndent">
9918 </span><span class="tokenText">redundant - when true it</span><span class="tokenIndent">
9919 </span><span class="tokenText">would suggest that the</span><span class="tokenIndent">
9920 </span><span class="tokenText">annotationElement values</span><span class="tokenIndent">
9921 </span><span class="tokenText">together form a graph</span></pre></td>
9928 <td class="firstColumn"><b><a href="vamsasDocument1.html#id96" target="mainFrame" title="No namespace"
9929 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">group</a></b></td>
9930 <td><b>xs:string</b></td>
9935 <div class="annotation">
9936 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9937 class="preWrapContainer">
9939 <td width="100%"><pre><span class="tokenText">Annotation with the same non-empty group name are grouped</span><span class="tokenIndent">
9940 </span><span class="tokenText">together</span></pre></td>
9947 <td class="firstColumn"><b><a href="vamsasDocument1.html#id94" target="mainFrame" title="No namespace"
9948 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
9949 <td><b>xs:ID</b></td>
9954 <div class="annotation">
9955 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9956 class="preWrapContainer">
9958 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
9965 <td class="firstColumn"><b><a href="vamsasDocument1.html#id95" target="mainFrame" title="No namespace"
9966 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
9967 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
9968 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
9969 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
9974 <div class="annotation"></div>
9978 <td class="firstColumn"><b><a href="vamsasDocument1.html#id97" target="mainFrame" title="No namespace"
9979 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
9980 <td><b>xs:string</b></td>
9985 <div class="annotation">
9986 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
9987 class="preWrapContainer">
9989 <td width="100%"><pre><span class="tokenText">A Das Feature has both a type and a Type ID. We go the</span><span class="tokenIndent">
9990 </span><span class="tokenText">route of requiring the type string to be taken from a controlled</span><span class="tokenIndent">
9991 </span><span class="tokenText">vocabulary if an application expects others to make sense of it. The</span><span class="tokenIndent">
9992 </span><span class="tokenText">type may qualified - so uniprot:CHAIN is a valid type name, and</span><span class="tokenIndent">
9993 </span><span class="tokenText">considered distinct from someotherDB:CHAIN</span></pre></td>
10004 <td class="firstColumn">
10005 <div class="floatLeft"><b>Source</b></div>
10006 <div class="floatRight"><input id="button_source_id104" type="image" src="images/button_minus.gif" value="-"
10007 onclick="switchState('source_id104');"
10008 class="control" /></div>
10011 <div id="source_id104" style="display:block">
10012 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10013 class="preWrapContainer">
10015 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"AlignmentSequenceAnnotation"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
10016 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10017 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10018 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotate over positions and regions of the ungapped sequence in the context of the alignment</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10019 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">/></span><span class="tokenIndent">
10020 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10021 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10022 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
10023 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
10024 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:Provenance"</span><span class="tokenElement">/></span><span class="tokenIndent">
10025 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
10026 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
10027 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10028 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10029 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10030 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
10031 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
10032 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10033 </span><span class="tokenComment"><!--
10034 This replaces the flat list of sequenceFeatures.
10035 <xs:element name="AlignmentFeatures" minOccurs="0" maxOccurs="unbounded"><xs:complexType><xs:annotation>
10036 <xs:documentation>Annotate over positions and regions of the alignment</xs:documentation>
10037 </xs:annotation><xs:complexContent>
10038 <xs:extension base="vamsas:rangeFeature">
10039 <xs:attribute name="seqRef" type="xs:IDREF" use="optional">
10040 <xs:annotation><xs:documentation>annotation may be associated with a particular sequence lying within the same reference frame as the rangeType's objRef</xs:documentation></xs:annotation>
10041 </xs:attribute>
10042 </xs:extension>
10043 </xs:complexContent></xs:complexType></xs:element> --></span><span class="tokenIndent">
10044 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10045 </span><span class="tokenElement"></xs:element></span></pre></td>
10052 <td class="firstColumn"><b>Schema location</b></td>
10053 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
10058 <td class="rt_lineRight"></td>
10061 <td class="rt_cornerBottomLeft"></td>
10062 <td class="rt_lineBottom"></td>
10063 <td class="rt_cornerBottomRight"></td>
10065 </table><a id="id115"></a><div class="componentTitle">Element <span class="qname">vamsas:ApplicationData</span></div>
10068 <td class="rt_cornerTopLeft"></td>
10069 <td class="rt_lineTop"></td>
10070 <td class="rt_cornerTopRight"></td>
10073 <td class="rt_lineLeft"></td>
10074 <td class="rt_content">
10075 <table class="component">
10078 <td class="firstColumn"><b>Namespace</b></td>
10079 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
10082 <td class="firstColumn">
10083 <div class="floatLeft"><b>Diagram</b></div>
10084 <div class="floatRight"><input id="button_diagram_id115" type="image" src="images/button_minus.gif" value="-"
10085 onclick="switchState('diagram_id115');"
10086 class="control" /></div>
10088 <td class="diagram">
10089 <div id="diagram_id115" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html50.jpeg"
10090 usemap="#vamsasDocument_46_html50" /><map name="vamsasDocument_46_html50" id="vamsasDocument_46_html50">
10091 <area alt="vamsasDocument1.tmp#id117" href="vamsasDocument1.html#id117"
10092 coords="314,54,449,96" />
10093 <area alt="vamsasDocument1.tmp#id118" href="vamsasDocument1.html#id118"
10094 coords="314,106,415,148" />
10095 <area alt="vamsasDocument1.tmp#id116" href="vamsasDocument1.html#id116"
10096 coords="232,22,362,44" />
10097 <area alt="vamsasDocument1.tmp#id125" href="vamsasDocument1.html#id125"
10098 coords="241,201,336,243" />
10099 <area alt="vamsasDocument1.tmp#id126" href="vamsasDocument1.html#id126"
10100 coords="241,253,336,295" />
10101 <area alt="vamsasDocument1.tmp#id119" href="vamsasDocument1.html#id119"
10102 coords="316,315,517,371" />
10103 <area alt="vamsasDocument1.tmp#id122" href="vamsasDocument1.html#id122"
10104 coords="316,381,517,423" />
10105 <area alt="vamsasDocument1.tmp#id123" href="vamsasDocument1.html#id123"
10106 coords="316,433,517,489" /></map></div>
10110 <td class="firstColumn"><b>Type</b></td>
10111 <td>extension of <b><a href="vamsasDocument1.html#id116" target="mainFrame"
10112 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10113 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></td>
10116 <td class="firstColumn"><b>Type hierarchy</b></td>
10119 <li><b><a href="vamsasDocument1.html#id116" target="mainFrame"
10120 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10121 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></li>
10126 <td class="firstColumn">
10127 <div class="floatLeft"><b>Properties</b></div>
10128 <div class="floatRight"><input id="button_properties_id115" type="image" src="images/button_minus.gif"
10130 onclick="switchState('properties_id115');"
10131 class="control" /></div>
10134 <div id="properties_id115" style="display:block">
10135 <table class="propertiesTable">
10137 <td class="firstColumn">content:
10140 <td><b>complex</b></td>
10147 <td class="firstColumn">
10148 <div class="floatLeft"><b>Used by</b></div>
10149 <div class="floatRight"><input id="button_usedBy_id115" type="image" src="images/button_minus.gif" value="-"
10150 onclick="switchState('usedBy_id115');"
10151 class="control" /></div>
10154 <div id="usedBy_id115" style="display:block">
10155 <table class="usedByTable">
10157 <td class="firstColumn">Element </td>
10158 <td><b><a href="vamsasDocument0.html#id2" target="mainFrame"
10159 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasDocument"
10160 onclick="updatePageTitle('Schema documentation for vamsasDocument.xsd')">vdoc:VamsasDocument</a></b></td>
10167 <td class="firstColumn"><b>Model</b></td>
10168 <td>(<b><a href="vamsasDocument1.html#id117" target="mainFrame"
10169 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10170 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b> | <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10171 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10172 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b>) , <b><a href="vamsasDocument1.html#id119" target="mainFrame"
10173 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10174 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:User*</a></b> , <b><a href="vamsasDocument1.html#id122" target="mainFrame"
10175 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10176 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Common{0,1}</a></b> , <b><a href="vamsasDocument1.html#id123" target="mainFrame"
10177 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10178 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Instance*</a></b></td>
10181 <td class="firstColumn"><b>Children</b></td>
10182 <td><b><a href="vamsasDocument1.html#id122" target="mainFrame"
10183 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10184 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Common</a></b>, <b><a href="vamsasDocument1.html#id123" target="mainFrame"
10185 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10186 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Instance</a></b>, <b><a href="vamsasDocument1.html#id119" target="mainFrame"
10187 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10188 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:User</a></b>, <b><a href="vamsasDocument1.html#id117" target="mainFrame"
10189 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10190 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b>, <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10191 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10192 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
10195 <td class="firstColumn">
10196 <div class="floatLeft"><b>Instance</b></div>
10197 <div class="floatRight"><input id="button_instance_id115" type="image" src="images/button_minus.gif" value="-"
10198 onclick="switchState('instance_id115');"
10199 class="control" /></div>
10202 <div id="instance_id115" style="display:block">
10203 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10204 class="preWrapContainer">
10206 <td width="100%"><pre><span class="tokenElement"><vamsas:ApplicationData</span><span class="tokenText"> </span><span class="tokenAttrName">name=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">version=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
10207 </span><span class="tokenElement"><vamsas:data</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:data></span><span class="tokenIndent">
10208 </span><span class="tokenElement"><vamsas:dataReference</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:dataReference></span><span class="tokenIndent">
10209 </span><span class="tokenElement"></vamsas:ApplicationData></span></pre></td>
10216 <td class="firstColumn">
10217 <div class="floatLeft"><b>Attributes</b></div>
10218 <div class="floatRight"><input id="button_attributes_id115" type="image" src="images/button_minus.gif"
10220 onclick="switchState('attributes_id115');"
10221 class="control" /></div>
10224 <div id="attributes_id115" style="display:block">
10225 <table class="attributesTable">
10233 <th>Annotation</th>
10237 <td class="firstColumn"><b><a href="vamsasDocument1.html#id126" target="mainFrame" title="No namespace"
10238 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">name</a></b></td>
10239 <td><b>xs:string</b></td>
10244 <div class="annotation">
10245 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10246 class="preWrapContainer">
10248 <td width="100%"><pre><span class="tokenText">Canonical name of application</span></pre></td>
10255 <td class="firstColumn"><b><a href="vamsasDocument1.html#id125" target="mainFrame" title="No namespace"
10256 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">version</a></b></td>
10257 <td><b>xs:string</b></td>
10262 <div class="annotation">
10263 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10264 class="preWrapContainer">
10266 <td width="100%"><pre><span class="tokenText">Version string describing the application specific</span><span class="tokenIndent">
10267 </span><span class="tokenText">data storage version used</span></pre></td>
10278 <td class="firstColumn">
10279 <div class="floatLeft"><b>Source</b></div>
10280 <div class="floatRight"><input id="button_source_id115" type="image" src="images/button_minus.gif" value="-"
10281 onclick="switchState('source_id115');"
10282 class="control" /></div>
10285 <div id="source_id115" style="display:block">
10286 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10287 class="preWrapContainer">
10289 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"ApplicationData"</span><span class="tokenElement">></span><span class="tokenIndent">
10290 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10291 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10292 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Data specific to a particular type and version of vamsas application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10293 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10294 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10295 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">></span><span class="tokenIndent">
10296 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
10297 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"User"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
10298 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10299 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10300 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">></span><span class="tokenIndent">
10301 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10302 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Data available to just a particular user</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10303 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10304 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"fullname"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
10305 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"organization"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
10306 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
10307 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10308 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10309 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
10310 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Common"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
10311 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10312 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10313 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">/></span><span class="tokenIndent">
10314 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10315 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10316 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
10317 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Instance"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
10318 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10319 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10320 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">></span><span class="tokenIndent">
10321 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10322 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Data available to just a specific instance of the application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10323 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">VAMSAS/Pierre: Is this data volatile ? Application instances may not be accessible after the session has closed - the user may have to be presented with the option of picking up the data in that instance</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10324 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10325 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"urn"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
10326 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
10327 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10328 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10329 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
10330 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
10331 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"version"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
10332 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10333 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Version string describing the application specific data storage version used</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10334 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10335 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
10336 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
10337 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10338 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Canonical name of application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10339 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10340 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
10341 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
10342 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10343 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10344 </span><span class="tokenElement"></xs:element></span></pre></td>
10351 <td class="firstColumn"><b>Schema location</b></td>
10352 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
10357 <td class="rt_lineRight"></td>
10360 <td class="rt_cornerBottomLeft"></td>
10361 <td class="rt_lineBottom"></td>
10362 <td class="rt_cornerBottomRight"></td>
10364 </table><a id="id117"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id116" target="mainFrame"
10365 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10366 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b>/vamsas:data</span></div>
10369 <td class="rt_cornerTopLeft"></td>
10370 <td class="rt_lineTop"></td>
10371 <td class="rt_cornerTopRight"></td>
10374 <td class="rt_lineLeft"></td>
10375 <td class="rt_content">
10376 <table class="component">
10379 <td class="firstColumn"><b>Namespace</b></td>
10380 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
10383 <td class="firstColumn">
10384 <div class="floatLeft"><b>Diagram</b></div>
10385 <div class="floatRight"><input id="button_diagram_id117" type="image" src="images/button_minus.gif" value="-"
10386 onclick="switchState('diagram_id117');"
10387 class="control" /></div>
10389 <td class="diagram">
10390 <div id="diagram_id117" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html20.jpeg" /></div>
10394 <td class="firstColumn"><b>Type</b></td>
10395 <td><b>xs:base64Binary</b></td>
10398 <td class="firstColumn">
10399 <div class="floatLeft"><b>Properties</b></div>
10400 <div class="floatRight"><input id="button_properties_id117" type="image" src="images/button_minus.gif"
10402 onclick="switchState('properties_id117');"
10403 class="control" /></div>
10406 <div id="properties_id117" style="display:block">
10407 <table class="propertiesTable">
10409 <td class="firstColumn">content:
10412 <td><b>simple</b></td>
10419 <td class="firstColumn">
10420 <div class="floatLeft"><b>Source</b></div>
10421 <div class="floatRight"><input id="button_source_id117" type="image" src="images/button_minus.gif" value="-"
10422 onclick="switchState('source_id117');"
10423 class="control" /></div>
10426 <div id="source_id117" style="display:block">
10427 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10428 class="preWrapContainer">
10430 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"data"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:base64Binary"</span><span class="tokenElement">/></span></pre></td>
10437 <td class="firstColumn"><b>Schema location</b></td>
10438 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
10443 <td class="rt_lineRight"></td>
10446 <td class="rt_cornerBottomLeft"></td>
10447 <td class="rt_lineBottom"></td>
10448 <td class="rt_cornerBottomRight"></td>
10450 </table><a id="id118"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id116" target="mainFrame"
10451 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10452 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b>/vamsas:dataReference</span></div>
10455 <td class="rt_cornerTopLeft"></td>
10456 <td class="rt_lineTop"></td>
10457 <td class="rt_cornerTopRight"></td>
10460 <td class="rt_lineLeft"></td>
10461 <td class="rt_content">
10462 <table class="component">
10465 <td class="firstColumn"><b>Namespace</b></td>
10466 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
10469 <td class="firstColumn">
10470 <div class="floatLeft"><b>Diagram</b></div>
10471 <div class="floatRight"><input id="button_diagram_id118" type="image" src="images/button_minus.gif" value="-"
10472 onclick="switchState('diagram_id118');"
10473 class="control" /></div>
10475 <td class="diagram">
10476 <div id="diagram_id118" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html10.jpeg" /></div>
10480 <td class="firstColumn"><b>Type</b></td>
10481 <td><b>xs:string</b></td>
10484 <td class="firstColumn">
10485 <div class="floatLeft"><b>Properties</b></div>
10486 <div class="floatRight"><input id="button_properties_id118" type="image" src="images/button_minus.gif"
10488 onclick="switchState('properties_id118');"
10489 class="control" /></div>
10492 <div id="properties_id118" style="display:block">
10493 <table class="propertiesTable">
10495 <td class="firstColumn">content:
10498 <td><b>simple</b></td>
10505 <td class="firstColumn">
10506 <div class="floatLeft"><b>Source</b></div>
10507 <div class="floatRight"><input id="button_source_id118" type="image" src="images/button_minus.gif" value="-"
10508 onclick="switchState('source_id118');"
10509 class="control" /></div>
10512 <div id="source_id118" style="display:block">
10513 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10514 class="preWrapContainer">
10516 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dataReference"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span></pre></td>
10523 <td class="firstColumn"><b>Schema location</b></td>
10524 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
10529 <td class="rt_lineRight"></td>
10532 <td class="rt_cornerBottomLeft"></td>
10533 <td class="rt_lineBottom"></td>
10534 <td class="rt_cornerBottomRight"></td>
10536 </table><a id="id119"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id115" target="mainFrame"
10537 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10538 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/vamsas:User</span></div>
10541 <td class="rt_cornerTopLeft"></td>
10542 <td class="rt_lineTop"></td>
10543 <td class="rt_cornerTopRight"></td>
10546 <td class="rt_lineLeft"></td>
10547 <td class="rt_content">
10548 <table class="component">
10551 <td class="firstColumn"><b>Namespace</b></td>
10552 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
10555 <td class="firstColumn">
10556 <div class="floatLeft"><b>Diagram</b></div>
10557 <div class="floatRight"><input id="button_diagram_id119" type="image" src="images/button_minus.gif" value="-"
10558 onclick="switchState('diagram_id119');"
10559 class="control" /></div>
10561 <td class="diagram">
10562 <div id="diagram_id119" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html62.jpeg"
10563 usemap="#vamsasDocument_46_html62" /><map name="vamsasDocument_46_html62" id="vamsasDocument_46_html62">
10564 <area alt="vamsasDocument1.tmp#id117" href="vamsasDocument1.html#id117"
10565 coords="314,54,449,96" />
10566 <area alt="vamsasDocument1.tmp#id118" href="vamsasDocument1.html#id118"
10567 coords="314,106,415,148" />
10568 <area alt="vamsasDocument1.tmp#id116" href="vamsasDocument1.html#id116"
10569 coords="232,22,362,44" />
10570 <area alt="vamsasDocument1.tmp#id120" href="vamsasDocument1.html#id120"
10571 coords="241,201,336,243" />
10572 <area alt="vamsasDocument1.tmp#id121" href="vamsasDocument1.html#id121"
10573 coords="241,253,348,295" /></map></div>
10577 <td class="firstColumn"><b>Type</b></td>
10578 <td>extension of <b><a href="vamsasDocument1.html#id116" target="mainFrame"
10579 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10580 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></td>
10583 <td class="firstColumn"><b>Type hierarchy</b></td>
10586 <li><b><a href="vamsasDocument1.html#id116" target="mainFrame"
10587 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10588 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></li>
10593 <td class="firstColumn">
10594 <div class="floatLeft"><b>Properties</b></div>
10595 <div class="floatRight"><input id="button_properties_id119" type="image" src="images/button_minus.gif"
10597 onclick="switchState('properties_id119');"
10598 class="control" /></div>
10601 <div id="properties_id119" style="display:block">
10602 <table class="propertiesTable">
10604 <td class="firstColumn">content:
10607 <td><b>complex</b></td>
10610 <td class="firstColumn">minOccurs:
10616 <td class="firstColumn">maxOccurs:
10619 <td><b>unbounded</b></td>
10626 <td class="firstColumn"><b>Model</b></td>
10627 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
10628 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10629 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b> | <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10630 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10631 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
10634 <td class="firstColumn"><b>Children</b></td>
10635 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
10636 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10637 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b>, <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10638 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10639 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
10642 <td class="firstColumn">
10643 <div class="floatLeft"><b>Instance</b></div>
10644 <div class="floatRight"><input id="button_instance_id119" type="image" src="images/button_minus.gif" value="-"
10645 onclick="switchState('instance_id119');"
10646 class="control" /></div>
10649 <div id="instance_id119" style="display:block">
10650 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10651 class="preWrapContainer">
10653 <td width="100%"><pre><span class="tokenElement"><vamsas:User</span><span class="tokenText"> </span><span class="tokenAttrName">fullname=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">organization=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
10654 </span><span class="tokenElement"><vamsas:data</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:data></span><span class="tokenIndent">
10655 </span><span class="tokenElement"><vamsas:dataReference</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:dataReference></span><span class="tokenIndent">
10656 </span><span class="tokenElement"></vamsas:User></span></pre></td>
10663 <td class="firstColumn">
10664 <div class="floatLeft"><b>Attributes</b></div>
10665 <div class="floatRight"><input id="button_attributes_id119" type="image" src="images/button_minus.gif"
10667 onclick="switchState('attributes_id119');"
10668 class="control" /></div>
10671 <div id="attributes_id119" style="display:block">
10672 <table class="attributesTable">
10680 <th>Annotation</th>
10684 <td class="firstColumn"><b><a href="vamsasDocument1.html#id120" target="mainFrame" title="No namespace"
10685 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">fullname</a></b></td>
10686 <td><b>xs:string</b></td>
10691 <div class="annotation"></div>
10695 <td class="firstColumn"><b><a href="vamsasDocument1.html#id121" target="mainFrame" title="No namespace"
10696 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">organization</a></b></td>
10697 <td><b>xs:string</b></td>
10702 <div class="annotation"></div>
10710 <td class="firstColumn">
10711 <div class="floatLeft"><b>Source</b></div>
10712 <div class="floatRight"><input id="button_source_id119" type="image" src="images/button_minus.gif" value="-"
10713 onclick="switchState('source_id119');"
10714 class="control" /></div>
10717 <div id="source_id119" style="display:block">
10718 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10719 class="preWrapContainer">
10721 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"User"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
10722 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10723 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10724 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">></span><span class="tokenIndent">
10725 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
10726 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Data available to just a particular user</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
10727 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
10728 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"fullname"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
10729 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"organization"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
10730 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
10731 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10732 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10733 </span><span class="tokenElement"></xs:element></span></pre></td>
10740 <td class="firstColumn"><b>Schema location</b></td>
10741 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
10746 <td class="rt_lineRight"></td>
10749 <td class="rt_cornerBottomLeft"></td>
10750 <td class="rt_lineBottom"></td>
10751 <td class="rt_cornerBottomRight"></td>
10753 </table><a id="id122"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id115" target="mainFrame"
10754 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10755 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/vamsas:Common</span></div>
10758 <td class="rt_cornerTopLeft"></td>
10759 <td class="rt_lineTop"></td>
10760 <td class="rt_cornerTopRight"></td>
10763 <td class="rt_lineLeft"></td>
10764 <td class="rt_content">
10765 <table class="component">
10768 <td class="firstColumn"><b>Namespace</b></td>
10769 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
10772 <td class="firstColumn">
10773 <div class="floatLeft"><b>Diagram</b></div>
10774 <div class="floatRight"><input id="button_diagram_id122" type="image" src="images/button_minus.gif" value="-"
10775 onclick="switchState('diagram_id122');"
10776 class="control" /></div>
10778 <td class="diagram">
10779 <div id="diagram_id122" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html25.jpeg"
10780 usemap="#vamsasDocument_46_html25" /><map name="vamsasDocument_46_html25" id="vamsasDocument_46_html25">
10781 <area alt="vamsasDocument1.tmp#id117" href="vamsasDocument1.html#id117"
10782 coords="314,54,449,96" />
10783 <area alt="vamsasDocument1.tmp#id118" href="vamsasDocument1.html#id118"
10784 coords="314,106,415,148" />
10785 <area alt="vamsasDocument1.tmp#id116" href="vamsasDocument1.html#id116"
10786 coords="232,22,362,44" /></map></div>
10790 <td class="firstColumn"><b>Type</b></td>
10791 <td>extension of <b><a href="vamsasDocument1.html#id116" target="mainFrame"
10792 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10793 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></td>
10796 <td class="firstColumn"><b>Type hierarchy</b></td>
10799 <li><b><a href="vamsasDocument1.html#id116" target="mainFrame"
10800 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10801 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></li>
10806 <td class="firstColumn">
10807 <div class="floatLeft"><b>Properties</b></div>
10808 <div class="floatRight"><input id="button_properties_id122" type="image" src="images/button_minus.gif"
10810 onclick="switchState('properties_id122');"
10811 class="control" /></div>
10814 <div id="properties_id122" style="display:block">
10815 <table class="propertiesTable">
10817 <td class="firstColumn">content:
10820 <td><b>complex</b></td>
10823 <td class="firstColumn">minOccurs:
10833 <td class="firstColumn"><b>Model</b></td>
10834 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
10835 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10836 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b> | <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10837 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10838 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
10841 <td class="firstColumn"><b>Children</b></td>
10842 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
10843 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10844 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b>, <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10845 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10846 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
10849 <td class="firstColumn">
10850 <div class="floatLeft"><b>Instance</b></div>
10851 <div class="floatRight"><input id="button_instance_id122" type="image" src="images/button_minus.gif" value="-"
10852 onclick="switchState('instance_id122');"
10853 class="control" /></div>
10856 <div id="instance_id122" style="display:block">
10857 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10858 class="preWrapContainer">
10860 <td width="100%"><pre><span class="tokenElement"><vamsas:Common</span><span class="tokenElement">></span><span class="tokenIndent">
10861 </span><span class="tokenElement"><vamsas:data</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:data></span><span class="tokenIndent">
10862 </span><span class="tokenElement"><vamsas:dataReference</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:dataReference></span><span class="tokenIndent">
10863 </span><span class="tokenElement"></vamsas:Common></span></pre></td>
10870 <td class="firstColumn">
10871 <div class="floatLeft"><b>Source</b></div>
10872 <div class="floatRight"><input id="button_source_id122" type="image" src="images/button_minus.gif" value="-"
10873 onclick="switchState('source_id122');"
10874 class="control" /></div>
10877 <div id="source_id122" style="display:block">
10878 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
10879 class="preWrapContainer">
10881 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Common"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
10882 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
10883 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
10884 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">/></span><span class="tokenIndent">
10885 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
10886 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
10887 </span><span class="tokenElement"></xs:element></span></pre></td>
10894 <td class="firstColumn"><b>Schema location</b></td>
10895 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
10900 <td class="rt_lineRight"></td>
10903 <td class="rt_cornerBottomLeft"></td>
10904 <td class="rt_lineBottom"></td>
10905 <td class="rt_cornerBottomRight"></td>
10907 </table><a id="id123"></a><div class="componentTitle">Element <span class="qname"><b><a href="vamsasDocument1.html#id115" target="mainFrame"
10908 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10909 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/vamsas:Instance</span></div>
10912 <td class="rt_cornerTopLeft"></td>
10913 <td class="rt_lineTop"></td>
10914 <td class="rt_cornerTopRight"></td>
10917 <td class="rt_lineLeft"></td>
10918 <td class="rt_content">
10919 <table class="component">
10922 <td class="firstColumn"><b>Namespace</b></td>
10923 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
10926 <td class="firstColumn">
10927 <div class="floatLeft"><b>Diagram</b></div>
10928 <div class="floatRight"><input id="button_diagram_id123" type="image" src="images/button_minus.gif" value="-"
10929 onclick="switchState('diagram_id123');"
10930 class="control" /></div>
10932 <td class="diagram">
10933 <div id="diagram_id123" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html26.jpeg"
10934 usemap="#vamsasDocument_46_html26" /><map name="vamsasDocument_46_html26" id="vamsasDocument_46_html26">
10935 <area alt="vamsasDocument1.tmp#id117" href="vamsasDocument1.html#id117"
10936 coords="314,54,449,96" />
10937 <area alt="vamsasDocument1.tmp#id118" href="vamsasDocument1.html#id118"
10938 coords="314,106,415,148" />
10939 <area alt="vamsasDocument1.tmp#id116" href="vamsasDocument1.html#id116"
10940 coords="232,22,362,44" />
10941 <area alt="vamsasDocument1.tmp#id124" href="vamsasDocument1.html#id124"
10942 coords="241,201,336,243" /></map></div>
10946 <td class="firstColumn"><b>Type</b></td>
10947 <td>extension of <b><a href="vamsasDocument1.html#id116" target="mainFrame"
10948 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10949 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></td>
10952 <td class="firstColumn"><b>Type hierarchy</b></td>
10955 <li><b><a href="vamsasDocument1.html#id116" target="mainFrame"
10956 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10957 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></li>
10962 <td class="firstColumn">
10963 <div class="floatLeft"><b>Properties</b></div>
10964 <div class="floatRight"><input id="button_properties_id123" type="image" src="images/button_minus.gif"
10966 onclick="switchState('properties_id123');"
10967 class="control" /></div>
10970 <div id="properties_id123" style="display:block">
10971 <table class="propertiesTable">
10973 <td class="firstColumn">content:
10976 <td><b>complex</b></td>
10979 <td class="firstColumn">minOccurs:
10985 <td class="firstColumn">maxOccurs:
10988 <td><b>unbounded</b></td>
10995 <td class="firstColumn"><b>Model</b></td>
10996 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
10997 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
10998 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b> | <b><a href="vamsasDocument1.html#id118" target="mainFrame"
10999 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11000 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
11003 <td class="firstColumn"><b>Children</b></td>
11004 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
11005 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11006 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b>, <b><a href="vamsasDocument1.html#id118" target="mainFrame"
11007 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11008 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
11011 <td class="firstColumn">
11012 <div class="floatLeft"><b>Instance</b></div>
11013 <div class="floatRight"><input id="button_instance_id123" type="image" src="images/button_minus.gif" value="-"
11014 onclick="switchState('instance_id123');"
11015 class="control" /></div>
11018 <div id="instance_id123" style="display:block">
11019 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11020 class="preWrapContainer">
11022 <td width="100%"><pre><span class="tokenElement"><vamsas:Instance</span><span class="tokenText"> </span><span class="tokenAttrName">urn=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
11023 </span><span class="tokenElement"><vamsas:data</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:data></span><span class="tokenIndent">
11024 </span><span class="tokenElement"><vamsas:dataReference</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:dataReference></span><span class="tokenIndent">
11025 </span><span class="tokenElement"></vamsas:Instance></span></pre></td>
11032 <td class="firstColumn">
11033 <div class="floatLeft"><b>Attributes</b></div>
11034 <div class="floatRight"><input id="button_attributes_id123" type="image" src="images/button_minus.gif"
11036 onclick="switchState('attributes_id123');"
11037 class="control" /></div>
11040 <div id="attributes_id123" style="display:block">
11041 <table class="attributesTable">
11049 <th>Annotation</th>
11053 <td class="firstColumn"><b><a href="vamsasDocument1.html#id124" target="mainFrame" title="No namespace"
11054 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">urn</a></b></td>
11055 <td><b>xs:string</b></td>
11060 <div class="annotation"></div>
11068 <td class="firstColumn">
11069 <div class="floatLeft"><b>Source</b></div>
11070 <div class="floatRight"><input id="button_source_id123" type="image" src="images/button_minus.gif" value="-"
11071 onclick="switchState('source_id123');"
11072 class="control" /></div>
11075 <div id="source_id123" style="display:block">
11076 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11077 class="preWrapContainer">
11079 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Instance"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
11080 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
11081 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
11082 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">></span><span class="tokenIndent">
11083 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11084 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Data available to just a specific instance of the application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11085 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">VAMSAS/Pierre: Is this data volatile ? Application instances may not be accessible after the session has closed - the user may have to be presented with the option of picking up the data in that instance</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11086 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11087 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"urn"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
11088 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
11089 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
11090 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
11091 </span><span class="tokenElement"></xs:element></span></pre></td>
11098 <td class="firstColumn"><b>Schema location</b></td>
11099 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
11104 <td class="rt_lineRight"></td>
11107 <td class="rt_cornerBottomLeft"></td>
11108 <td class="rt_lineBottom"></td>
11109 <td class="rt_cornerBottomRight"></td>
11111 </table><a id="id127"></a><div class="componentTitle">Element <span class="qname">vamsas:Attachment</span></div>
11114 <td class="rt_cornerTopLeft"></td>
11115 <td class="rt_lineTop"></td>
11116 <td class="rt_cornerTopRight"></td>
11119 <td class="rt_lineLeft"></td>
11120 <td class="rt_content">
11121 <table class="component">
11124 <td class="firstColumn"><b>Namespace</b></td>
11125 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
11128 <td class="firstColumn">
11129 <div class="floatLeft"><b>Diagram</b></div>
11130 <div class="floatRight"><input id="button_diagram_id127" type="image" src="images/button_minus.gif" value="-"
11131 onclick="switchState('diagram_id127');"
11132 class="control" /></div>
11134 <td class="diagram">
11135 <div id="diagram_id127" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html39.jpeg"
11136 usemap="#vamsasDocument_46_html39" /><map name="vamsasDocument_46_html39" id="vamsasDocument_46_html39">
11137 <area alt="vamsasDocument1.tmp#id117" href="vamsasDocument1.html#id117"
11138 coords="314,54,449,96" />
11139 <area alt="vamsasDocument1.tmp#id118" href="vamsasDocument1.html#id118"
11140 coords="314,106,415,148" />
11141 <area alt="vamsasDocument1.tmp#id116" href="vamsasDocument1.html#id116"
11142 coords="232,22,362,44" />
11143 <area alt="vamsasDocument1.tmp#id128" href="vamsasDocument1.html#id128"
11144 coords="241,201,357,261" />
11145 <area alt="vamsasDocument1.tmp#id129" href="vamsasDocument1.html#id129"
11146 coords="241,271,336,313" />
11147 <area alt="vamsasDocument1.tmp#id130" href="vamsasDocument1.html#id130"
11148 coords="241,323,337,365" />
11149 <area alt="vamsasDocument1.tmp#id131" href="vamsasDocument1.html#id131"
11150 coords="241,375,324,417" /></map></div>
11154 <td class="firstColumn"><b>Type</b></td>
11155 <td>extension of <b><a href="vamsasDocument1.html#id116" target="mainFrame"
11156 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11157 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></td>
11160 <td class="firstColumn"><b>Type hierarchy</b></td>
11163 <li><b><a href="vamsasDocument1.html#id116" target="mainFrame"
11164 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11165 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:appData</a></b></li>
11170 <td class="firstColumn">
11171 <div class="floatLeft"><b>Properties</b></div>
11172 <div class="floatRight"><input id="button_properties_id127" type="image" src="images/button_minus.gif"
11174 onclick="switchState('properties_id127');"
11175 class="control" /></div>
11178 <div id="properties_id127" style="display:block">
11179 <table class="propertiesTable">
11181 <td class="firstColumn">content:
11184 <td><b>complex</b></td>
11191 <td class="firstColumn">
11192 <div class="floatLeft"><b>Used by</b></div>
11193 <div class="floatRight"><input id="button_usedBy_id127" type="image" src="images/button_minus.gif" value="-"
11194 onclick="switchState('usedBy_id127');"
11195 class="control" /></div>
11198 <div id="usedBy_id127" style="display:block">
11199 <table class="usedByTable">
11201 <td class="firstColumn">Element </td>
11202 <td><b><a href="vamsasDocument0.html#id2" target="mainFrame"
11203 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasDocument"
11204 onclick="updatePageTitle('Schema documentation for vamsasDocument.xsd')">vdoc:VamsasDocument</a></b></td>
11211 <td class="firstColumn"><b>Model</b></td>
11212 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
11213 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11214 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b> | <b><a href="vamsasDocument1.html#id118" target="mainFrame"
11215 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11216 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
11219 <td class="firstColumn"><b>Children</b></td>
11220 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
11221 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11222 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b>, <b><a href="vamsasDocument1.html#id118" target="mainFrame"
11223 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11224 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
11227 <td class="firstColumn">
11228 <div class="floatLeft"><b>Instance</b></div>
11229 <div class="floatRight"><input id="button_instance_id127" type="image" src="images/button_minus.gif" value="-"
11230 onclick="switchState('instance_id127');"
11231 class="control" /></div>
11234 <div id="instance_id127" style="display:block">
11235 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11236 class="preWrapContainer">
11238 <td width="100%"><pre><span class="tokenElement"><vamsas:Attachment</span><span class="tokenText"> </span><span class="tokenAttrName">compressed=</span><span class="tokenAttrValue">"false"</span><span class="tokenText"> </span><span class="tokenAttrName">id=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">objectref=</span><span class="tokenAttrValue">""</span><span class="tokenText"> </span><span class="tokenAttrName">type=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
11239 </span><span class="tokenElement"><vamsas:data</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:data></span><span class="tokenIndent">
11240 </span><span class="tokenElement"><vamsas:dataReference</span><span class="tokenElement">></span><span class="tokenText">{1,1}</span><span class="tokenElement"></vamsas:dataReference></span><span class="tokenIndent">
11241 </span><span class="tokenElement"></vamsas:Attachment></span></pre></td>
11248 <td class="firstColumn">
11249 <div class="floatLeft"><b>Attributes</b></div>
11250 <div class="floatRight"><input id="button_attributes_id127" type="image" src="images/button_minus.gif"
11252 onclick="switchState('attributes_id127');"
11253 class="control" /></div>
11256 <div id="attributes_id127" style="display:block">
11257 <table class="attributesTable">
11265 <th>Annotation</th>
11269 <td class="firstColumn"><b><a href="vamsasDocument1.html#id128" target="mainFrame" title="No namespace"
11270 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">compressed</a></b></td>
11271 <td><b>xs:boolean</b></td>
11276 <div class="annotation">
11277 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11278 class="preWrapContainer">
11280 <td width="100%"><pre><span class="tokenText">true implies data will be decompresses with Zip</span><span class="tokenIndent">
11281 </span><span class="tokenText">before presenting to application</span></pre></td>
11288 <td class="firstColumn"><b><a href="vamsasDocument1.html#id131" target="mainFrame" title="No namespace"
11289 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
11290 <td><b>xs:ID</b></td>
11295 <div class="annotation">
11296 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11297 class="preWrapContainer">
11299 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
11306 <td class="firstColumn"><b><a href="vamsasDocument1.html#id130" target="mainFrame" title="No namespace"
11307 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">objectref</a></b></td>
11308 <td><b>xs:IDREF</b></td>
11313 <div class="annotation">
11314 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11315 class="preWrapContainer">
11317 <td width="100%"><pre><span class="tokenText">Object the arbitrary data is associated with</span></pre></td>
11324 <td class="firstColumn"><b><a href="vamsasDocument1.html#id129" target="mainFrame" title="No namespace"
11325 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
11326 <td><b>xs:string</b></td>
11331 <div class="annotation">
11332 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11333 class="preWrapContainer">
11335 <td width="100%"><pre><span class="tokenText">Type of arbitrary data - TODO: decide format - use</span><span class="tokenIndent">
11336 </span><span class="tokenText">(extended) MIME types ?</span></pre></td>
11347 <td class="firstColumn">
11348 <div class="floatLeft"><b>Source</b></div>
11349 <div class="floatRight"><input id="button_source_id127" type="image" src="images/button_minus.gif" value="-"
11350 onclick="switchState('source_id127');"
11351 class="control" /></div>
11354 <div id="source_id127" style="display:block">
11355 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11356 class="preWrapContainer">
11358 <td width="100%"><pre><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"Attachment"</span><span class="tokenElement">></span><span class="tokenIndent">
11359 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
11360 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
11361 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:appData"</span><span class="tokenElement">></span><span class="tokenIndent">
11362 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11363 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">General data container to attach a typed data object to any vamsas object</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11364 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11365 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"compressed"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"false"</span><span class="tokenElement">></span><span class="tokenIndent">
11366 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11367 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">true implies data will be decompresses with Zip before presenting to application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11368 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11369 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
11370 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
11371 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11372 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Type of arbitrary data - TODO: decide format - use (extended) MIME types ?</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11373 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11374 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
11375 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"objectref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
11376 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11377 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object the arbitrary data is associated with</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11378 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11379 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
11380 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
11381 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11382 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11383 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11384 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
11385 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
11386 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
11387 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
11388 </span><span class="tokenElement"></xs:element></span></pre></td>
11395 <td class="firstColumn"><b>Schema location</b></td>
11396 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
11401 <td class="rt_lineRight"></td>
11404 <td class="rt_cornerBottomLeft"></td>
11405 <td class="rt_lineBottom"></td>
11406 <td class="rt_cornerBottomRight"></td>
11408 </table><a id="id18"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:rangeType</span></div>
11411 <td class="rt_cornerTopLeft"></td>
11412 <td class="rt_lineTop"></td>
11413 <td class="rt_cornerTopRight"></td>
11416 <td class="rt_lineLeft"></td>
11417 <td class="rt_content">
11418 <table class="component">
11421 <td class="firstColumn"><b>Namespace</b></td>
11422 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
11425 <td class="firstColumn">
11426 <div class="floatLeft"><b>Annotations</b></div>
11427 <div class="floatRight"><input id="button_annotations_id18" type="image" src="images/button_minus.gif"
11429 onclick="switchState('annotations_id18');"
11430 class="control" /></div>
11433 <div id="annotations_id18" style="display:block">
11434 <div class="annotation">
11435 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11436 class="preWrapContainer">
11438 <td width="100%"><pre><span class="tokenText">Specify an ordered set of positions and/or regions on the principle</span><span class="tokenIndent">
11439 </span><span class="tokenText">dimension of some associated vamsas object</span></pre></td>
11443 <div class="annotation">
11444 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11445 class="preWrapContainer">
11447 <td width="100%"><pre><span class="tokenText">Keeping to jaxb-1.0 specification for the moment - this choice should</span><span class="tokenIndent">
11448 </span><span class="tokenText">become a substitution group when we use jaxb-2.0 capable bindings</span></pre></td>
11456 <td class="firstColumn">
11457 <div class="floatLeft"><b>Diagram</b></div>
11458 <div class="floatRight"><input id="button_diagram_id18" type="image" src="images/button_minus.gif" value="-"
11459 onclick="switchState('diagram_id18');"
11460 class="control" /></div>
11462 <td class="diagram">
11463 <div id="diagram_id18" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html22.jpeg"
11464 usemap="#vamsasDocument_46_html22" /><map name="vamsasDocument_46_html22" id="vamsasDocument_46_html22">
11465 <area alt="vamsasDocument1.tmp#id19" href="vamsasDocument1.html#id19"
11466 coords="206,0,265,38" />
11467 <area alt="vamsasDocument1.tmp#id21" href="vamsasDocument1.html#id21"
11468 coords="206,48,265,86" /></map></div>
11472 <td class="firstColumn">
11473 <div class="floatLeft"><b>Properties</b></div>
11474 <div class="floatRight"><input id="button_properties_id18" type="image" src="images/button_minus.gif"
11476 onclick="switchState('properties_id18');"
11477 class="control" /></div>
11480 <div id="properties_id18" style="display:block">
11481 <table class="propertiesTable">
11483 <td class="firstColumn">abstract:
11486 <td><b>true</b></td>
11493 <td class="firstColumn">
11494 <div class="floatLeft"><b>Used by</b></div>
11495 <div class="floatRight"><input id="button_usedBy_id18" type="image" src="images/button_minus.gif" value="-"
11496 onclick="switchState('usedBy_id18');"
11497 class="control" /></div>
11500 <div id="usedBy_id18" style="display:block">
11501 <table class="usedByTable">
11503 <td class="firstColumn">Element </td>
11504 <td><b><a href="vamsasDocument1.html#id17" target="mainFrame"
11505 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11506 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input</a></b></td>
11509 <td class="firstColumn">Complex Types </td>
11510 <td><b><a href="vamsasDocument1.html#id62" target="mainFrame"
11511 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11512 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b>, <b><a href="vamsasDocument1.html#id80" target="mainFrame"
11513 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11514 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
11521 <td class="firstColumn"><b>Model</b></td>
11522 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
11523 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11524 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
11525 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11526 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b></td>
11529 <td class="firstColumn"><b>Children</b></td>
11530 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
11531 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11532 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
11533 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11534 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b></td>
11537 <td class="firstColumn">
11538 <div class="floatLeft"><b>Source</b></div>
11539 <div class="floatRight"><input id="button_source_id18" type="image" src="images/button_minus.gif" value="-"
11540 onclick="switchState('source_id18');"
11541 class="control" /></div>
11544 <div id="source_id18" style="display:block">
11545 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11546 class="preWrapContainer">
11548 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"rangeType"</span><span class="tokenAttrName"> abstract=</span><span class="tokenAttrValue">"true"</span><span class="tokenElement">></span><span class="tokenIndent">
11549 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11550 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Specify an ordered set of positions and/or regions on the principle dimension of some associated vamsas object</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11551 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Keeping to jaxb-1.0 specification for the moment - this choice should become a substitution group when we use jaxb-2.0 capable bindings</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11552 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11553 </span><span class="tokenElement"><xs:choice</span><span class="tokenElement">></span><span class="tokenIndent">
11554 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"pos"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
11555 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11556 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">a position within the associated object's coordinate system</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11557 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11558 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
11559 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"i"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
11560 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
11561 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
11562 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seg"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
11563 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11564 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">a region from start to end, with flag for inclusivity of terminii</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11565 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11566 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
11567 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"start"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
11568 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"end"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
11569 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"inclusive"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
11570 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11571 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">when false, a consecutive range like 'start=1, end=2' means the region lying after position 1 and before position 2</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11572 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11573 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
11574 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
11575 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
11576 </span><span class="tokenElement"></xs:choice></span><span class="tokenIndent">
11577 </span><span class="tokenComment"><!-- Do we really need this - a position could be just a seg with start=end and inclusive=true --></span><span class="tokenIndent">
11578 </span><span class="tokenElement"></xs:complexType></span></pre></td>
11585 <td class="firstColumn"><b>Schema location</b></td>
11586 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
11591 <td class="rt_lineRight"></td>
11594 <td class="rt_cornerBottomLeft"></td>
11595 <td class="rt_lineBottom"></td>
11596 <td class="rt_cornerBottomRight"></td>
11598 </table><a id="id35"></a><div class="componentTitle">Simple Type <span class="qname">vamsas:locks</span></div>
11601 <td class="rt_cornerTopLeft"></td>
11602 <td class="rt_lineTop"></td>
11603 <td class="rt_cornerTopRight"></td>
11606 <td class="rt_lineLeft"></td>
11607 <td class="rt_content">
11608 <table class="component">
11611 <td class="firstColumn"><b>Namespace</b></td>
11612 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
11615 <td class="firstColumn">
11616 <div class="floatLeft"><b>Annotations</b></div>
11617 <div class="floatRight"><input id="button_annotations_id35" type="image" src="images/button_minus.gif"
11619 onclick="switchState('annotations_id35');"
11620 class="control" /></div>
11623 <div id="annotations_id35" style="display:block">
11624 <div class="annotation">
11625 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11626 class="preWrapContainer">
11628 <td width="100%"><pre><span class="tokenText">Contains lock information: locktype:ApplicationHandle locktype is</span><span class="tokenIndent">
11629 </span><span class="tokenText">'local' or 'full' A lock is only valid if the ApplicationHandle resolves to a living</span><span class="tokenIndent">
11630 </span><span class="tokenText">application in the vamsas session. A local lock means that the application has</span><span class="tokenIndent">
11631 </span><span class="tokenText">locked changes to all local properties on the object. A full lock means that the</span><span class="tokenIndent">
11632 </span><span class="tokenText">application has locked changes to all properties on the object, and any objects that</span><span class="tokenIndent">
11633 </span><span class="tokenText">it holds references to.</span></pre></td>
11641 <td class="firstColumn">
11642 <div class="floatLeft"><b>Diagram</b></div>
11643 <div class="floatRight"><input id="button_diagram_id35" type="image" src="images/button_minus.gif" value="-"
11644 onclick="switchState('diagram_id35');"
11645 class="control" /></div>
11647 <td class="diagram">
11648 <div id="diagram_id35" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html57.jpeg" /></div>
11652 <td class="firstColumn"><b>Type</b></td>
11653 <td><b>xs:string</b></td>
11656 <td class="firstColumn">
11657 <div class="floatLeft"><b>Used by</b></div>
11658 <div class="floatRight"><input id="button_usedBy_id35" type="image" src="images/button_minus.gif" value="-"
11659 onclick="switchState('usedBy_id35');"
11660 class="control" /></div>
11663 <div id="usedBy_id35" style="display:block">
11664 <table class="usedByTable">
11666 <td class="firstColumn">Attributes </td>
11667 <td><b><a href="vamsasDocument1.html#id111" target="mainFrame" title="No namespace"
11668 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/@modifiable</a></b>, <b><a href="vamsasDocument1.html#id49" target="mainFrame" title="No namespace"
11669 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/@modifiable</a></b>, <b><a href="vamsasDocument1.html#id34" target="mainFrame" title="No namespace"
11670 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:newick/@modifiable</a></b>, <b><a href="vamsasDocument1.html#id114" target="mainFrame" title="No namespace"
11671 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS/@modifiable</a></b>, <b><a href="vamsasDocument1.html#id45" target="mainFrame" title="No namespace"
11672 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType/@modifiable</a></b>, <b><a href="vamsasDocument1.html#id95" target="mainFrame" title="No namespace"
11673 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation/@modifiable</a></b></td>
11680 <td class="firstColumn">
11681 <div class="floatLeft"><b>Source</b></div>
11682 <div class="floatRight"><input id="button_source_id35" type="image" src="images/button_minus.gif" value="-"
11683 onclick="switchState('source_id35');"
11684 class="control" /></div>
11687 <div id="source_id35" style="display:block">
11688 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11689 class="preWrapContainer">
11691 <td width="100%"><pre><span class="tokenElement"><xs:simpleType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"locks"</span><span class="tokenElement">></span><span class="tokenIndent">
11692 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11693 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Contains lock information: locktype:ApplicationHandle locktype is 'local' or 'full' A lock is only valid if the ApplicationHandle resolves to a living application in the vamsas session. A local lock means that the application has locked changes to all local properties on the object. A full lock means that the application has locked changes to all properties on the object, and any objects that it holds references to.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11694 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11695 </span><span class="tokenElement"><xs:restriction</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span><span class="tokenIndent">
11696 </span><span class="tokenElement"></xs:simpleType></span></pre></td>
11703 <td class="firstColumn"><b>Schema location</b></td>
11704 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
11709 <td class="rt_lineRight"></td>
11712 <td class="rt_cornerBottomLeft"></td>
11713 <td class="rt_lineBottom"></td>
11714 <td class="rt_cornerBottomRight"></td>
11716 </table><a id="id37"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:nodeType</span></div>
11719 <td class="rt_cornerTopLeft"></td>
11720 <td class="rt_lineTop"></td>
11721 <td class="rt_cornerTopRight"></td>
11724 <td class="rt_lineLeft"></td>
11725 <td class="rt_content">
11726 <table class="component">
11729 <td class="firstColumn"><b>Namespace</b></td>
11730 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
11733 <td class="firstColumn">
11734 <div class="floatLeft"><b>Diagram</b></div>
11735 <div class="floatRight"><input id="button_diagram_id37" type="image" src="images/button_minus.gif" value="-"
11736 onclick="switchState('diagram_id37');"
11737 class="control" /></div>
11739 <td class="diagram">
11740 <div id="diagram_id37" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html61.jpeg"
11741 usemap="#vamsasDocument_46_html61" /><map name="vamsasDocument_46_html61" id="vamsasDocument_46_html61">
11742 <area alt="vamsasDocument1.tmp#id44" href="vamsasDocument1.html#id44"
11743 coords="141,33,224,75" />
11744 <area alt="vamsasDocument1.tmp#id45" href="vamsasDocument1.html#id45"
11745 coords="141,85,260,127" />
11746 <area alt="vamsasDocument1.tmp#id38" href="vamsasDocument1.html#id38"
11747 coords="216,147,311,189" />
11748 <area alt="vamsasDocument1.tmp#id39" href="vamsasDocument1.html#id39"
11749 coords="216,199,311,241" />
11750 <area alt="vamsasDocument1.tmp#id40" href="vamsasDocument1.html#id40"
11751 coords="216,251,382,307" />
11752 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
11753 coords="216,317,378,373" /></map></div>
11757 <td class="firstColumn">
11758 <div class="floatLeft"><b>Used by</b></div>
11759 <div class="floatRight"><input id="button_usedBy_id37" type="image" src="images/button_minus.gif" value="-"
11760 onclick="switchState('usedBy_id37');"
11761 class="control" /></div>
11764 <div id="usedBy_id37" style="display:block">
11765 <table class="usedByTable">
11767 <td class="firstColumn">Element </td>
11768 <td><b><a href="vamsasDocument1.html#id36" target="mainFrame"
11769 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11770 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:treenode</a></b></td>
11777 <td class="firstColumn"><b>Model</b></td>
11778 <td><b><a href="vamsasDocument1.html#id38" target="mainFrame"
11779 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11780 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name{0,1}</a></b> , <b><a href="vamsasDocument1.html#id39" target="mainFrame"
11781 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11782 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id40" target="mainFrame"
11783 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11784 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:vref*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
11785 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11786 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b></td>
11789 <td class="firstColumn"><b>Children</b></td>
11790 <td><b><a href="vamsasDocument1.html#id39" target="mainFrame"
11791 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11792 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id38" target="mainFrame"
11793 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11794 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
11795 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11796 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id40" target="mainFrame"
11797 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11798 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:vref</a></b></td>
11801 <td class="firstColumn">
11802 <div class="floatLeft"><b>Attributes</b></div>
11803 <div class="floatRight"><input id="button_attributes_id37" type="image" src="images/button_minus.gif"
11805 onclick="switchState('attributes_id37');"
11806 class="control" /></div>
11809 <div id="attributes_id37" style="display:block">
11810 <table class="attributesTable">
11818 <th>Annotation</th>
11822 <td class="firstColumn"><b><a href="vamsasDocument1.html#id44" target="mainFrame" title="No namespace"
11823 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
11824 <td><b>xs:ID</b></td>
11829 <div class="annotation">
11830 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11831 class="preWrapContainer">
11833 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
11840 <td class="firstColumn"><b><a href="vamsasDocument1.html#id45" target="mainFrame" title="No namespace"
11841 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
11842 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
11843 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11844 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
11849 <div class="annotation"></div>
11857 <td class="firstColumn">
11858 <div class="floatLeft"><b>Source</b></div>
11859 <div class="floatRight"><input id="button_source_id37" type="image" src="images/button_minus.gif" value="-"
11860 onclick="switchState('source_id37');"
11861 class="control" /></div>
11864 <div id="source_id37" style="display:block">
11865 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11866 class="preWrapContainer">
11868 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"nodeType"</span><span class="tokenElement">></span><span class="tokenIndent">
11869 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
11870 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"1"</span><span class="tokenElement">></span><span class="tokenIndent">
11871 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11872 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Short name for this node</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11873 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11874 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
11875 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"1"</span><span class="tokenElement">></span><span class="tokenIndent">
11876 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11877 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Descriptive text for this node</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11878 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11879 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
11880 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"vref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:referenceType"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
11881 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11882 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Direct associations between this node and any vamsas objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11883 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11884 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
11885 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
11886 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
11887 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
11888 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
11889 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
11890 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
11891 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
11892 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
11893 </span><span class="tokenElement"></xs:complexType></span></pre></td>
11900 <td class="firstColumn"><b>Schema location</b></td>
11901 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
11906 <td class="rt_lineRight"></td>
11909 <td class="rt_cornerBottomLeft"></td>
11910 <td class="rt_lineBottom"></td>
11911 <td class="rt_cornerBottomRight"></td>
11913 </table><a id="id41"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:referenceType</span></div>
11916 <td class="rt_cornerTopLeft"></td>
11917 <td class="rt_lineTop"></td>
11918 <td class="rt_cornerTopRight"></td>
11921 <td class="rt_lineLeft"></td>
11922 <td class="rt_content">
11923 <table class="component">
11926 <td class="firstColumn"><b>Namespace</b></td>
11927 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
11930 <td class="firstColumn">
11931 <div class="floatLeft"><b>Annotations</b></div>
11932 <div class="floatRight"><input id="button_annotations_id41" type="image" src="images/button_minus.gif"
11934 onclick="switchState('annotations_id41');"
11935 class="control" /></div>
11938 <div id="annotations_id41" style="display:block">
11939 <div class="annotation">
11940 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
11941 class="preWrapContainer">
11943 <td width="100%"><pre><span class="tokenText">base type for citing arbitrary links between vamsas objects</span></pre></td>
11951 <td class="firstColumn">
11952 <div class="floatLeft"><b>Diagram</b></div>
11953 <div class="floatRight"><input id="button_diagram_id41" type="image" src="images/button_minus.gif" value="-"
11954 onclick="switchState('diagram_id41');"
11955 class="control" /></div>
11957 <td class="diagram">
11958 <div id="diagram_id41" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html7.jpeg"
11959 usemap="#vamsasDocument_46_html7" /><map name="vamsasDocument_46_html7" id="vamsasDocument_46_html7">
11960 <area alt="vamsasDocument1.tmp#id42" href="vamsasDocument1.html#id42"
11961 coords="165,69,248,111" />
11962 <area alt="vamsasDocument1.tmp#id43" href="vamsasDocument1.html#id43"
11963 coords="165,121,268,163" /></map></div>
11967 <td class="firstColumn"><b>Type</b></td>
11968 <td>extension of <b>xs:string</b></td>
11971 <td class="firstColumn">
11972 <div class="floatLeft"><b>Used by</b></div>
11973 <div class="floatRight"><input id="button_usedBy_id41" type="image" src="images/button_minus.gif" value="-"
11974 onclick="switchState('usedBy_id41');"
11975 class="control" /></div>
11978 <div id="usedBy_id41" style="display:block">
11979 <table class="usedByTable">
11981 <td class="firstColumn">Elements </td>
11982 <td><b><a href="vamsasDocument1.html#id72" target="mainFrame"
11983 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11984 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:vxref</a></b>, <b><a href="vamsasDocument1.html#id40" target="mainFrame"
11985 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
11986 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType/vamsas:vref</a></b></td>
11993 <td class="firstColumn">
11994 <div class="floatLeft"><b>Attributes</b></div>
11995 <div class="floatRight"><input id="button_attributes_id41" type="image" src="images/button_minus.gif"
11997 onclick="switchState('attributes_id41');"
11998 class="control" /></div>
12001 <div id="attributes_id41" style="display:block">
12002 <table class="attributesTable">
12010 <th>Annotation</th>
12014 <td class="firstColumn"><b><a href="vamsasDocument1.html#id42" target="mainFrame" title="No namespace"
12015 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
12016 <td><b>xs:ID</b></td>
12021 <div class="annotation">
12022 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12023 class="preWrapContainer">
12025 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
12032 <td class="firstColumn"><b><a href="vamsasDocument1.html#id43" target="mainFrame" title="No namespace"
12033 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">refs</a></b></td>
12034 <td><b>xs:IDREFS</b></td>
12039 <div class="annotation">
12040 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12041 class="preWrapContainer">
12043 <td width="100%"><pre><span class="tokenText">List of one or more vamsas object</span><span class="tokenIndent">
12044 </span><span class="tokenText">references</span></pre></td>
12055 <td class="firstColumn">
12056 <div class="floatLeft"><b>Source</b></div>
12057 <div class="floatRight"><input id="button_source_id41" type="image" src="images/button_minus.gif" value="-"
12058 onclick="switchState('source_id41');"
12059 class="control" /></div>
12062 <div id="source_id41" style="display:block">
12063 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12064 class="preWrapContainer">
12066 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"referenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
12067 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12068 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">base type for citing arbitrary links between vamsas objects</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12069 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12070 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
12071 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
12072 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12073 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Optional human readable description of the relationship</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12074 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12075 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
12076 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12077 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12078 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12079 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
12080 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"refs"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenElement">></span><span class="tokenIndent">
12081 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12082 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">List of one or more vamsas object references</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12083 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12084 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
12085 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
12086 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
12087 </span><span class="tokenElement"></xs:complexType></span></pre></td>
12094 <td class="firstColumn"><b>Schema location</b></td>
12095 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
12100 <td class="rt_lineRight"></td>
12103 <td class="rt_cornerBottomLeft"></td>
12104 <td class="rt_lineBottom"></td>
12105 <td class="rt_cornerBottomRight"></td>
12107 </table><a id="id52"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:SequenceType</span></div>
12110 <td class="rt_cornerTopLeft"></td>
12111 <td class="rt_lineTop"></td>
12112 <td class="rt_cornerTopRight"></td>
12115 <td class="rt_lineLeft"></td>
12116 <td class="rt_content">
12117 <table class="component">
12120 <td class="firstColumn"><b>Namespace</b></td>
12121 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
12124 <td class="firstColumn">
12125 <div class="floatLeft"><b>Diagram</b></div>
12126 <div class="floatRight"><input id="button_diagram_id52" type="image" src="images/button_minus.gif" value="-"
12127 onclick="switchState('diagram_id52');"
12128 class="control" /></div>
12130 <td class="diagram">
12131 <div id="diagram_id52" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html8.jpeg"
12132 usemap="#vamsasDocument_46_html8" /><map name="vamsasDocument_46_html8" id="vamsasDocument_46_html8">
12133 <area alt="vamsasDocument1.tmp#id56" href="vamsasDocument1.html#id56"
12134 coords="166,33,267,75" />
12135 <area alt="vamsasDocument1.tmp#id57" href="vamsasDocument1.html#id57"
12136 coords="166,85,267,127" />
12137 <area alt="vamsasDocument1.tmp#id53" href="vamsasDocument1.html#id53"
12138 coords="241,147,336,189" />
12139 <area alt="vamsasDocument1.tmp#id54" href="vamsasDocument1.html#id54"
12140 coords="241,199,336,241" />
12141 <area alt="vamsasDocument1.tmp#id55" href="vamsasDocument1.html#id55"
12142 coords="241,251,336,293" />
12143 <area alt="vamsasDocument1.tmp#id11" href="vamsasDocument1.html#id11"
12144 coords="241,303,403,359" /></map></div>
12148 <td class="firstColumn">
12149 <div class="floatLeft"><b>Used by</b></div>
12150 <div class="floatRight"><input id="button_usedBy_id52" type="image" src="images/button_minus.gif" value="-"
12151 onclick="switchState('usedBy_id52');"
12152 class="control" /></div>
12155 <div id="usedBy_id52" style="display:block">
12156 <table class="usedByTable">
12158 <td class="firstColumn">Elements </td>
12159 <td><b><a href="vamsasDocument1.html#id103" target="mainFrame"
12160 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12161 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence</a></b>, <b><a href="vamsasDocument1.html#id51" target="mainFrame"
12162 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12163 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence</a></b></td>
12170 <td class="firstColumn"><b>Model</b></td>
12171 <td><b><a href="vamsasDocument1.html#id53" target="mainFrame"
12172 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12173 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequence</a></b> , <b><a href="vamsasDocument1.html#id54" target="mainFrame"
12174 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12175 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b> , <b><a href="vamsasDocument1.html#id55" target="mainFrame"
12176 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12177 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
12178 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12179 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b></td>
12182 <td class="firstColumn"><b>Children</b></td>
12183 <td><b><a href="vamsasDocument1.html#id55" target="mainFrame"
12184 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12185 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id54" target="mainFrame"
12186 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12187 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:name</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
12188 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12189 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id53" target="mainFrame"
12190 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12191 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequence</a></b></td>
12194 <td class="firstColumn">
12195 <div class="floatLeft"><b>Attributes</b></div>
12196 <div class="floatRight"><input id="button_attributes_id52" type="image" src="images/button_minus.gif"
12198 onclick="switchState('attributes_id52');"
12199 class="control" /></div>
12202 <div id="attributes_id52" style="display:block">
12203 <table class="attributesTable">
12211 <th>Annotation</th>
12215 <td class="firstColumn"><b><a href="vamsasDocument1.html#id57" target="mainFrame" title="No namespace"
12216 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">end</a></b></td>
12217 <td><b>xs:integer</b></td>
12222 <div class="annotation"></div>
12226 <td class="firstColumn"><b><a href="vamsasDocument1.html#id56" target="mainFrame" title="No namespace"
12227 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">start</a></b></td>
12228 <td><b>xs:integer</b></td>
12233 <div class="annotation"></div>
12241 <td class="firstColumn">
12242 <div class="floatLeft"><b>Source</b></div>
12243 <div class="floatRight"><input id="button_source_id52" type="image" src="images/button_minus.gif" value="-"
12244 onclick="switchState('source_id52');"
12245 class="control" /></div>
12248 <div id="source_id52" style="display:block">
12249 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12250 class="preWrapContainer">
12252 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"SequenceType"</span><span class="tokenElement">></span><span class="tokenIndent">
12253 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
12254 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"sequence"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span><span class="tokenIndent">
12255 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span><span class="tokenIndent">
12256 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">/></span><span class="tokenIndent">
12257 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
12258 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12259 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">additional typed properties</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12260 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12261 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12262 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
12263 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"start"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:integer"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
12264 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"end"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:integer"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span><span class="tokenIndent">
12265 </span><span class="tokenElement"></xs:complexType></span></pre></td>
12272 <td class="firstColumn"><b>Schema location</b></td>
12273 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
12278 <td class="rt_lineRight"></td>
12281 <td class="rt_cornerBottomLeft"></td>
12282 <td class="rt_lineBottom"></td>
12283 <td class="rt_cornerBottomRight"></td>
12285 </table><a id="id60"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:mapType</span></div>
12288 <td class="rt_cornerTopLeft"></td>
12289 <td class="rt_lineTop"></td>
12290 <td class="rt_cornerTopRight"></td>
12293 <td class="rt_lineLeft"></td>
12294 <td class="rt_content">
12295 <table class="component">
12298 <td class="firstColumn"><b>Namespace</b></td>
12299 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
12302 <td class="firstColumn">
12303 <div class="floatLeft"><b>Annotations</b></div>
12304 <div class="floatRight"><input id="button_annotations_id60" type="image" src="images/button_minus.gif"
12306 onclick="switchState('annotations_id60');"
12307 class="control" /></div>
12310 <div id="annotations_id60" style="display:block">
12311 <div class="annotation">
12312 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12313 class="preWrapContainer">
12315 <td width="100%"><pre><span class="tokenText">Two sets of ranges defined between objects - usually sequences, indicating which</span><span class="tokenIndent">
12316 </span><span class="tokenText">regions on each are mapped.</span></pre></td>
12324 <td class="firstColumn">
12325 <div class="floatLeft"><b>Diagram</b></div>
12326 <div class="floatRight"><input id="button_diagram_id60" type="image" src="images/button_minus.gif" value="-"
12327 onclick="switchState('diagram_id60');"
12328 class="control" /></div>
12330 <td class="diagram">
12331 <div id="diagram_id60" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html48.jpeg"
12332 usemap="#vamsasDocument_46_html48" /><map name="vamsasDocument_46_html48" id="vamsasDocument_46_html48">
12333 <area alt="vamsasDocument1.tmp#id61" href="vamsasDocument1.html#id61"
12334 coords="212,0,381,42" />
12335 <area alt="vamsasDocument1.tmp#id64" href="vamsasDocument1.html#id64"
12336 coords="212,52,381,94" /></map></div>
12340 <td class="firstColumn">
12341 <div class="floatLeft"><b>Used by</b></div>
12342 <div class="floatRight"><input id="button_usedBy_id60" type="image" src="images/button_minus.gif" value="-"
12343 onclick="switchState('usedBy_id60');"
12344 class="control" /></div>
12347 <div id="usedBy_id60" style="display:block">
12348 <table class="usedByTable">
12350 <td class="firstColumn">Elements </td>
12351 <td><b><a href="vamsasDocument1.html#id59" target="mainFrame"
12352 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12353 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef/vamsas:map</a></b>, <b><a href="vamsasDocument1.html#id75" target="mainFrame"
12354 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12355 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:sequenceMapping</a></b></td>
12362 <td class="firstColumn"><b>Model</b></td>
12363 <td><b><a href="vamsasDocument1.html#id61" target="mainFrame"
12364 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12365 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:local</a></b> , <b><a href="vamsasDocument1.html#id64" target="mainFrame"
12366 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12367 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapped</a></b></td>
12370 <td class="firstColumn"><b>Children</b></td>
12371 <td><b><a href="vamsasDocument1.html#id61" target="mainFrame"
12372 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12373 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:local</a></b>, <b><a href="vamsasDocument1.html#id64" target="mainFrame"
12374 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12375 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapped</a></b></td>
12378 <td class="firstColumn">
12379 <div class="floatLeft"><b>Source</b></div>
12380 <div class="floatRight"><input id="button_source_id60" type="image" src="images/button_minus.gif" value="-"
12381 onclick="switchState('source_id60');"
12382 class="control" /></div>
12385 <div id="source_id60" style="display:block">
12386 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12387 class="preWrapContainer">
12389 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"mapType"</span><span class="tokenElement">></span><span class="tokenIndent">
12390 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12391 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Two sets of ranges defined between objects - usually sequences, indicating which regions on each are mapped.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12392 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12393 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
12394 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"local"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:mapRangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
12395 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12396 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenIndent">
12397 </span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12398 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12399 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12400 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"mapped"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:mapRangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
12401 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12402 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenIndent">
12403 </span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12404 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12405 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12406 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
12407 </span><span class="tokenElement"></xs:complexType></span></pre></td>
12414 <td class="firstColumn"><b>Schema location</b></td>
12415 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
12420 <td class="rt_lineRight"></td>
12423 <td class="rt_cornerBottomLeft"></td>
12424 <td class="rt_lineBottom"></td>
12425 <td class="rt_cornerBottomRight"></td>
12427 </table><a id="id62"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:mapRangeType</span></div>
12430 <td class="rt_cornerTopLeft"></td>
12431 <td class="rt_lineTop"></td>
12432 <td class="rt_cornerTopRight"></td>
12435 <td class="rt_lineLeft"></td>
12436 <td class="rt_content">
12437 <table class="component">
12440 <td class="firstColumn"><b>Namespace</b></td>
12441 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
12444 <td class="firstColumn">
12445 <div class="floatLeft"><b>Diagram</b></div>
12446 <div class="floatRight"><input id="button_diagram_id62" type="image" src="images/button_minus.gif" value="-"
12447 onclick="switchState('diagram_id62');"
12448 class="control" /></div>
12450 <td class="diagram">
12451 <div id="diagram_id62" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html29.jpeg"
12452 usemap="#vamsasDocument_46_html29" /><map name="vamsasDocument_46_html29" id="vamsasDocument_46_html29">
12453 <area alt="vamsasDocument1.tmp#id19" href="vamsasDocument1.html#id19"
12454 coords="241,35,300,73" />
12455 <area alt="vamsasDocument1.tmp#id21" href="vamsasDocument1.html#id21"
12456 coords="241,83,300,121" />
12457 <area alt="vamsasDocument1.tmp#id18" href="vamsasDocument1.html#id18"
12458 coords="159,3,301,25" />
12459 <area alt="vamsasDocument1.tmp#id63" href="vamsasDocument1.html#id63"
12460 coords="168,174,306,216" /></map></div>
12464 <td class="firstColumn"><b>Type</b></td>
12465 <td>extension of <b><a href="vamsasDocument1.html#id18" target="mainFrame"
12466 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12467 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b></td>
12470 <td class="firstColumn"><b>Type hierarchy</b></td>
12473 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
12474 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12475 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
12476 <li><b><a href="vamsasDocument1.html#id62" target="mainFrame"
12477 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12478 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b></li>
12485 <td class="firstColumn">
12486 <div class="floatLeft"><b>Used by</b></div>
12487 <div class="floatRight"><input id="button_usedBy_id62" type="image" src="images/button_minus.gif" value="-"
12488 onclick="switchState('usedBy_id62');"
12489 class="control" /></div>
12492 <div id="usedBy_id62" style="display:block">
12493 <table class="usedByTable">
12495 <td class="firstColumn">Elements </td>
12496 <td><b><a href="vamsasDocument1.html#id61" target="mainFrame"
12497 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12498 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType/vamsas:local</a></b>, <b><a href="vamsasDocument1.html#id64" target="mainFrame"
12499 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12500 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapType/vamsas:mapped</a></b></td>
12507 <td class="firstColumn"><b>Model</b></td>
12508 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
12509 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12510 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
12511 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12512 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b></td>
12515 <td class="firstColumn"><b>Children</b></td>
12516 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
12517 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12518 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
12519 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12520 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b></td>
12523 <td class="firstColumn">
12524 <div class="floatLeft"><b>Attributes</b></div>
12525 <div class="floatRight"><input id="button_attributes_id62" type="image" src="images/button_minus.gif"
12527 onclick="switchState('attributes_id62');"
12528 class="control" /></div>
12531 <div id="attributes_id62" style="display:block">
12532 <table class="attributesTable">
12540 <th>Annotation</th>
12544 <td class="firstColumn"><b><a href="vamsasDocument1.html#id63" target="mainFrame" title="No namespace"
12545 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">unit</a></b></td>
12546 <td><b>xs:positiveInteger</b></td>
12551 <div class="annotation">
12552 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12553 class="preWrapContainer">
12555 <td width="100%"><pre><span class="tokenText">number of dictionary symbol widths involved in each</span><span class="tokenIndent">
12556 </span><span class="tokenText">mapped position on this sequence (for example, 3 for a dna sequence exon</span><span class="tokenIndent">
12557 </span><span class="tokenText">region that is being mapped to a protein sequence). This is optional,</span><span class="tokenIndent">
12558 </span><span class="tokenText">since the unit can be usually be inferred from the dictionary type of</span><span class="tokenIndent">
12559 </span><span class="tokenText">each sequence involved in the mapping.</span></pre></td>
12570 <td class="firstColumn">
12571 <div class="floatLeft"><b>Source</b></div>
12572 <div class="floatRight"><input id="button_source_id62" type="image" src="images/button_minus.gif" value="-"
12573 onclick="switchState('source_id62');"
12574 class="control" /></div>
12577 <div id="source_id62" style="display:block">
12578 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12579 class="preWrapContainer">
12581 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"mapRangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
12582 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
12583 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
12584 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"unit"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:positiveInteger"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
12585 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12586 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">number of dictionary symbol widths involved in each mapped position on this sequence (for example, 3 for a dna sequence exon region that is being mapped to a protein sequence). This is optional, since the unit can be usually be inferred from the dictionary type of each sequence involved in the mapping.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12587 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12588 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
12589 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
12590 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
12591 </span><span class="tokenElement"></xs:complexType></span></pre></td>
12598 <td class="firstColumn"><b>Schema location</b></td>
12599 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
12604 <td class="rt_lineRight"></td>
12607 <td class="rt_cornerBottomLeft"></td>
12608 <td class="rt_lineBottom"></td>
12609 <td class="rt_cornerBottomRight"></td>
12611 </table><a id="id80"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:rangeAnnotation</span></div>
12614 <td class="rt_cornerTopLeft"></td>
12615 <td class="rt_lineTop"></td>
12616 <td class="rt_cornerTopRight"></td>
12619 <td class="rt_lineLeft"></td>
12620 <td class="rt_content">
12621 <table class="component">
12624 <td class="firstColumn"><b>Namespace</b></td>
12625 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
12628 <td class="firstColumn">
12629 <div class="floatLeft"><b>Annotations</b></div>
12630 <div class="floatRight"><input id="button_annotations_id80" type="image" src="images/button_minus.gif"
12632 onclick="switchState('annotations_id80');"
12633 class="control" /></div>
12636 <div id="annotations_id80" style="display:block">
12637 <div class="annotation">
12638 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12639 class="preWrapContainer">
12641 <td width="100%"><pre><span class="tokenText">Annotation for a rangeSpec - values can be attached for the whole</span><span class="tokenIndent">
12642 </span><span class="tokenText">specification, and to each position within the spec. following the orientation</span><span class="tokenIndent">
12643 </span><span class="tokenText">specified by the ordered set of rangeSpec (pos, seg) elements.</span></pre></td>
12651 <td class="firstColumn">
12652 <div class="floatLeft"><b>Diagram</b></div>
12653 <div class="floatRight"><input id="button_diagram_id80" type="image" src="images/button_minus.gif" value="-"
12654 onclick="switchState('diagram_id80');"
12655 class="control" /></div>
12657 <td class="diagram">
12658 <div id="diagram_id80" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html54.jpeg"
12659 usemap="#vamsasDocument_46_html54" /><map name="vamsasDocument_46_html54" id="vamsasDocument_46_html54">
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12691 <td class="firstColumn"><b>Type</b></td>
12692 <td>extension of <b><a href="vamsasDocument1.html#id18" target="mainFrame"
12693 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12694 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b></td>
12697 <td class="firstColumn"><b>Type hierarchy</b></td>
12700 <li><b><a href="vamsasDocument1.html#id18" target="mainFrame"
12701 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12702 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b><ul>
12703 <li><b><a href="vamsasDocument1.html#id80" target="mainFrame"
12704 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12705 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></li>
12712 <td class="firstColumn">
12713 <div class="floatLeft"><b>Used by</b></div>
12714 <div class="floatRight"><input id="button_usedBy_id80" type="image" src="images/button_minus.gif" value="-"
12715 onclick="switchState('usedBy_id80');"
12716 class="control" /></div>
12719 <div id="usedBy_id80" style="display:block">
12720 <table class="usedByTable">
12722 <td class="firstColumn">Elements </td>
12723 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
12724 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12725 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b>, <b><a href="vamsasDocument1.html#id104" target="mainFrame"
12726 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12727 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence/vamsas:AlignmentSequenceAnnotation</a></b>, <b><a href="vamsasDocument1.html#id79" target="mainFrame"
12728 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12729 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:DataSetAnnotations</a></b></td>
12736 <td class="firstColumn"><b>Model</b></td>
12737 <td>(<b><a href="vamsasDocument1.html#id19" target="mainFrame"
12738 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12739 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos+</a></b> | <b><a href="vamsasDocument1.html#id21" target="mainFrame"
12740 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12741 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg+</a></b>) , <b><a href="vamsasDocument1.html#id81" target="mainFrame"
12742 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12743 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label{0,1}</a></b> , <b><a href="vamsasDocument1.html#id82" target="mainFrame"
12744 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12745 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description{0,1}</a></b> , <b><a href="vamsasDocument1.html#id83" target="mainFrame"
12746 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12747 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status{0,1}</a></b> , <b><a href="vamsasDocument1.html#id84" target="mainFrame"
12748 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12749 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement*</a></b> , <b><a href="vamsasDocument1.html#id92" target="mainFrame"
12750 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12751 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score*</a></b> , <b><a href="vamsasDocument1.html#id66" target="mainFrame"
12752 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12753 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link*</a></b> , <b><a href="vamsasDocument1.html#id11" target="mainFrame"
12754 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12755 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property*</a></b></td>
12758 <td class="firstColumn"><b>Children</b></td>
12759 <td><b><a href="vamsasDocument1.html#id84" target="mainFrame"
12760 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12761 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>, <b><a href="vamsasDocument1.html#id82" target="mainFrame"
12762 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12763 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:description</a></b>, <b><a href="vamsasDocument1.html#id81" target="mainFrame"
12764 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12765 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:label</a></b>, <b><a href="vamsasDocument1.html#id66" target="mainFrame"
12766 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12767 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b>, <b><a href="vamsasDocument1.html#id19" target="mainFrame"
12768 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12769 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>, <b><a href="vamsasDocument1.html#id11" target="mainFrame"
12770 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12771 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>, <b><a href="vamsasDocument1.html#id92" target="mainFrame"
12772 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12773 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score</a></b>, <b><a href="vamsasDocument1.html#id21" target="mainFrame"
12774 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12775 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>, <b><a href="vamsasDocument1.html#id83" target="mainFrame"
12776 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12777 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:status</a></b></td>
12780 <td class="firstColumn">
12781 <div class="floatLeft"><b>Attributes</b></div>
12782 <div class="floatRight"><input id="button_attributes_id80" type="image" src="images/button_minus.gif"
12784 onclick="switchState('attributes_id80');"
12785 class="control" /></div>
12788 <div id="attributes_id80" style="display:block">
12789 <table class="attributesTable">
12797 <th>Annotation</th>
12801 <td class="firstColumn"><b><a href="vamsasDocument1.html#id96" target="mainFrame" title="No namespace"
12802 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">group</a></b></td>
12803 <td><b>xs:string</b></td>
12808 <div class="annotation">
12809 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12810 class="preWrapContainer">
12812 <td width="100%"><pre><span class="tokenText">Annotation with the same non-empty group name are grouped</span><span class="tokenIndent">
12813 </span><span class="tokenText">together</span></pre></td>
12820 <td class="firstColumn"><b><a href="vamsasDocument1.html#id94" target="mainFrame" title="No namespace"
12821 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">id</a></b></td>
12822 <td><b>xs:ID</b></td>
12827 <div class="annotation">
12828 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12829 class="preWrapContainer">
12831 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
12838 <td class="firstColumn"><b><a href="vamsasDocument1.html#id95" target="mainFrame" title="No namespace"
12839 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">modifiable</a></b></td>
12840 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
12841 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
12842 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
12847 <div class="annotation"></div>
12851 <td class="firstColumn"><b><a href="vamsasDocument1.html#id97" target="mainFrame" title="No namespace"
12852 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">type</a></b></td>
12853 <td><b>xs:string</b></td>
12858 <div class="annotation">
12859 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12860 class="preWrapContainer">
12862 <td width="100%"><pre><span class="tokenText">A Das Feature has both a type and a Type ID. We go the</span><span class="tokenIndent">
12863 </span><span class="tokenText">route of requiring the type string to be taken from a controlled</span><span class="tokenIndent">
12864 </span><span class="tokenText">vocabulary if an application expects others to make sense of it. The</span><span class="tokenIndent">
12865 </span><span class="tokenText">type may qualified - so uniprot:CHAIN is a valid type name, and</span><span class="tokenIndent">
12866 </span><span class="tokenText">considered distinct from someotherDB:CHAIN</span></pre></td>
12877 <td class="firstColumn">
12878 <div class="floatLeft"><b>Source</b></div>
12879 <div class="floatRight"><input id="button_source_id80" type="image" src="images/button_minus.gif" value="-"
12880 onclick="switchState('source_id80');"
12881 class="control" /></div>
12884 <div id="source_id80" style="display:block">
12885 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
12886 class="preWrapContainer">
12888 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"rangeAnnotation"</span><span class="tokenElement">></span><span class="tokenIndent">
12889 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12890 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotation for a rangeSpec - values can be attached for the whole specification, and to each position within the spec. following the orientation specified by the ordered set of rangeSpec (pos, seg) elements.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12891 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12892 </span><span class="tokenElement"><xs:complexContent</span><span class="tokenElement">></span><span class="tokenIndent">
12893 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"vamsas:rangeType"</span><span class="tokenElement">></span><span class="tokenIndent">
12894 </span><span class="tokenElement"><xs:sequence</span><span class="tokenElement">></span><span class="tokenIndent">
12895 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"label"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
12896 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12897 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Short, meaningful name for the annotation - if this is absent, then the type string should be used in its place.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12898 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12899 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12900 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"description"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
12901 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12902 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Human readable description of the annotation</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12903 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12904 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12905 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"status"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenElement">></span><span class="tokenIndent">
12906 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12907 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: specify this - we have considered taking the GO evidence codes as a model for assessing a measure of quality to an annotation.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12908 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12909 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12910 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:annotationElement"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
12911 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12912 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotation Element position maps to ordered positions defined by the sequence of rangeType pos positions or concatenated seg start/end segments.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12913 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12914 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12915 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"score"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
12916 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12917 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Ordered set of optionally named float values for the whole annotation</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12918 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12919 </span><span class="tokenElement"><xs:complexType</span><span class="tokenElement">></span><span class="tokenIndent">
12920 </span><span class="tokenElement"><xs:simpleContent</span><span class="tokenElement">></span><span class="tokenIndent">
12921 </span><span class="tokenElement"><xs:extension</span><span class="tokenAttrName"> base=</span><span class="tokenAttrValue">"xs:float"</span><span class="tokenElement">></span><span class="tokenIndent">
12922 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"score"</span><span class="tokenElement">/></span><span class="tokenIndent">
12923 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
12924 </span><span class="tokenElement"></xs:simpleContent></span><span class="tokenIndent">
12925 </span><span class="tokenElement"></xs:complexType></span><span class="tokenIndent">
12926 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12927 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:link"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">/></span><span class="tokenIndent">
12928 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> ref=</span><span class="tokenAttrValue">"vamsas:property"</span><span class="tokenAttrName"> minOccurs=</span><span class="tokenAttrValue">"0"</span><span class="tokenAttrName"> maxOccurs=</span><span class="tokenAttrValue">"unbounded"</span><span class="tokenElement">></span><span class="tokenIndent">
12929 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12930 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Note:These are mutable so an application should check them each time.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12931 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12932 </span><span class="tokenElement"></xs:element></span><span class="tokenIndent">
12933 </span><span class="tokenElement"></xs:sequence></span><span class="tokenIndent">
12934 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
12935 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12936 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12937 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12938 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
12939 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span><span class="tokenIndent">
12940 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"group"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
12941 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12942 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotation with the same non-empty group name are grouped together</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12943 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12944 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
12945 </span><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
12946 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
12947 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">A Das Feature has both a type and a Type ID. We go the route of requiring the type string to be taken from a controlled vocabulary if an application expects others to make sense of it. The type may qualified - so uniprot:CHAIN is a valid type name, and considered distinct from someotherDB:CHAIN</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
12948 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
12949 </span><span class="tokenElement"></xs:attribute></span><span class="tokenIndent">
12950 </span><span class="tokenElement"></xs:extension></span><span class="tokenIndent">
12951 </span><span class="tokenElement"></xs:complexContent></span><span class="tokenIndent">
12952 </span><span class="tokenElement"></xs:complexType></span></pre></td>
12959 <td class="firstColumn"><b>Schema location</b></td>
12960 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
12965 <td class="rt_lineRight"></td>
12968 <td class="rt_cornerBottomLeft"></td>
12969 <td class="rt_lineBottom"></td>
12970 <td class="rt_cornerBottomRight"></td>
12972 </table><a id="id116"></a><div class="componentTitle">Complex Type <span class="qname">vamsas:appData</span></div>
12975 <td class="rt_cornerTopLeft"></td>
12976 <td class="rt_lineTop"></td>
12977 <td class="rt_cornerTopRight"></td>
12980 <td class="rt_lineLeft"></td>
12981 <td class="rt_content">
12982 <table class="component">
12985 <td class="firstColumn"><b>Namespace</b></td>
12986 <td>http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes</td>
12989 <td class="firstColumn">
12990 <div class="floatLeft"><b>Diagram</b></div>
12991 <div class="floatRight"><input id="button_diagram_id116" type="image" src="images/button_minus.gif" value="-"
12992 onclick="switchState('diagram_id116');"
12993 class="control" /></div>
12995 <td class="diagram">
12996 <div id="diagram_id116" style="display:block"><img alt="Diagram" border="0" src="images/vamsasDocument.html31.jpeg"
12997 usemap="#vamsasDocument_46_html31" /><map name="vamsasDocument_46_html31" id="vamsasDocument_46_html31">
12998 <area alt="vamsasDocument1.tmp#id117" href="vamsasDocument1.html#id117"
12999 coords="194,0,329,42" />
13000 <area alt="vamsasDocument1.tmp#id118" href="vamsasDocument1.html#id118"
13001 coords="194,52,295,94" /></map></div>
13005 <td class="firstColumn">
13006 <div class="floatLeft"><b>Used by</b></div>
13007 <div class="floatRight"><input id="button_usedBy_id116" type="image" src="images/button_minus.gif" value="-"
13008 onclick="switchState('usedBy_id116');"
13009 class="control" /></div>
13012 <div id="usedBy_id116" style="display:block">
13013 <table class="usedByTable">
13015 <td class="firstColumn">Elements </td>
13016 <td><b><a href="vamsasDocument1.html#id115" target="mainFrame"
13017 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13018 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>, <b><a href="vamsasDocument1.html#id122" target="mainFrame"
13019 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13020 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData/vamsas:Common</a></b>, <b><a href="vamsasDocument1.html#id123" target="mainFrame"
13021 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13022 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData/vamsas:Instance</a></b>, <b><a href="vamsasDocument1.html#id119" target="mainFrame"
13023 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13024 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData/vamsas:User</a></b>, <b><a href="vamsasDocument1.html#id127" target="mainFrame"
13025 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13026 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b></td>
13033 <td class="firstColumn"><b>Model</b></td>
13034 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
13035 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13036 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b> | <b><a href="vamsasDocument1.html#id118" target="mainFrame"
13037 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13038 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
13041 <td class="firstColumn"><b>Children</b></td>
13042 <td><b><a href="vamsasDocument1.html#id117" target="mainFrame"
13043 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13044 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:data</a></b>, <b><a href="vamsasDocument1.html#id118" target="mainFrame"
13045 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13046 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dataReference</a></b></td>
13049 <td class="firstColumn">
13050 <div class="floatLeft"><b>Source</b></div>
13051 <div class="floatRight"><input id="button_source_id116" type="image" src="images/button_minus.gif" value="-"
13052 onclick="switchState('source_id116');"
13053 class="control" /></div>
13056 <div id="source_id116" style="display:block">
13057 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13058 class="preWrapContainer">
13060 <td width="100%"><pre><span class="tokenElement"><xs:complexType</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"appData"</span><span class="tokenElement">></span><span class="tokenIndent">
13061 </span><span class="tokenElement"><xs:choice</span><span class="tokenElement">></span><span class="tokenIndent">
13062 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"data"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:base64Binary"</span><span class="tokenElement">/></span><span class="tokenIndent">
13063 </span><span class="tokenElement"><xs:element</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dataReference"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">/></span><span class="tokenIndent">
13064 </span><span class="tokenElement"></xs:choice></span><span class="tokenIndent">
13065 </span><span class="tokenElement"></xs:complexType></span></pre></td>
13072 <td class="firstColumn"><b>Schema location</b></td>
13073 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13078 <td class="rt_lineRight"></td>
13081 <td class="rt_cornerBottomLeft"></td>
13082 <td class="rt_lineBottom"></td>
13083 <td class="rt_cornerBottomRight"></td>
13085 </table><a id="id12"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id11" target="mainFrame"
13086 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13087 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>/@name</span></div>
13090 <td class="rt_cornerTopLeft"></td>
13091 <td class="rt_lineTop"></td>
13092 <td class="rt_cornerTopRight"></td>
13095 <td class="rt_lineLeft"></td>
13096 <td class="rt_content">
13097 <table class="component">
13100 <td class="firstColumn"><b>Namespace</b></td>
13101 <td>No namespace</td>
13104 <td class="firstColumn"><b>Type</b></td>
13105 <td><b>xs:string</b></td>
13108 <td class="firstColumn">
13109 <div class="floatLeft"><b>Properties</b></div>
13110 <div class="floatRight"><input id="button_properties_id12" type="image" src="images/button_minus.gif"
13112 onclick="switchState('properties_id12');"
13113 class="control" /></div>
13116 <div id="properties_id12" style="display:block">
13117 <table class="propertiesTable">
13119 <td class="firstColumn">use:
13122 <td><b>required</b></td>
13129 <td class="firstColumn">
13130 <div class="floatLeft"><b>Used by</b></div>
13131 <div class="floatRight"><input id="button_usedBy_id12" type="image" src="images/button_minus.gif" value="-"
13132 onclick="switchState('usedBy_id12');"
13133 class="control" /></div>
13136 <div id="usedBy_id12" style="display:block">
13137 <table class="usedByTable">
13139 <td class="firstColumn">Element </td>
13140 <td><b><a href="vamsasDocument1.html#id11" target="mainFrame"
13141 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13142 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b></td>
13149 <td class="firstColumn">
13150 <div class="floatLeft"><b>Source</b></div>
13151 <div class="floatRight"><input id="button_source_id12" type="image" src="images/button_minus.gif" value="-"
13152 onclick="switchState('source_id12');"
13153 class="control" /></div>
13156 <div id="source_id12" style="display:block">
13157 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13158 class="preWrapContainer">
13160 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
13167 <td class="firstColumn"><b>Schema location</b></td>
13168 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13173 <td class="rt_lineRight"></td>
13176 <td class="rt_cornerBottomLeft"></td>
13177 <td class="rt_lineBottom"></td>
13178 <td class="rt_cornerBottomRight"></td>
13180 </table><a id="id13"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id11" target="mainFrame"
13181 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13182 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b>/@type</span></div>
13185 <td class="rt_cornerTopLeft"></td>
13186 <td class="rt_lineTop"></td>
13187 <td class="rt_cornerTopRight"></td>
13190 <td class="rt_lineLeft"></td>
13191 <td class="rt_content">
13192 <table class="component">
13195 <td class="firstColumn"><b>Namespace</b></td>
13196 <td>No namespace</td>
13199 <td class="firstColumn">
13200 <div class="floatLeft"><b>Annotations</b></div>
13201 <div class="floatRight"><input id="button_annotations_id13" type="image" src="images/button_minus.gif"
13203 onclick="switchState('annotations_id13');"
13204 class="control" /></div>
13207 <div id="annotations_id13" style="display:block">
13208 <div class="annotation">
13209 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13210 class="preWrapContainer">
13212 <td width="100%"><pre><span class="tokenText">The type specifies how the property will be parsed.</span><span class="tokenIndent">
13213 </span><span class="tokenText">Empty property strings are allowed, and can be used to prototype the</span><span class="tokenIndent">
13214 </span><span class="tokenText">input to a document. TODO: specify allowed types</span></pre></td>
13222 <td class="firstColumn"><b>Type</b></td>
13223 <td><b>xs:string</b></td>
13226 <td class="firstColumn">
13227 <div class="floatLeft"><b>Properties</b></div>
13228 <div class="floatRight"><input id="button_properties_id13" type="image" src="images/button_minus.gif"
13230 onclick="switchState('properties_id13');"
13231 class="control" /></div>
13234 <div id="properties_id13" style="display:block">
13235 <table class="propertiesTable">
13237 <td class="firstColumn">use:
13240 <td><b>required</b></td>
13247 <td class="firstColumn">
13248 <div class="floatLeft"><b>Used by</b></div>
13249 <div class="floatRight"><input id="button_usedBy_id13" type="image" src="images/button_minus.gif" value="-"
13250 onclick="switchState('usedBy_id13');"
13251 class="control" /></div>
13254 <div id="usedBy_id13" style="display:block">
13255 <table class="usedByTable">
13257 <td class="firstColumn">Element </td>
13258 <td><b><a href="vamsasDocument1.html#id11" target="mainFrame"
13259 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13260 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:property</a></b></td>
13267 <td class="firstColumn">
13268 <div class="floatLeft"><b>Source</b></div>
13269 <div class="floatRight"><input id="button_source_id13" type="image" src="images/button_minus.gif" value="-"
13270 onclick="switchState('source_id13');"
13271 class="control" /></div>
13274 <div id="source_id13" style="display:block">
13275 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13276 class="preWrapContainer">
13278 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
13279 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
13280 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">The type specifies how the property will be parsed. Empty property strings are allowed, and can be used to prototype the input to a document. TODO: specify allowed types</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
13281 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
13282 </span><span class="tokenElement"></xs:attribute></span></pre></td>
13289 <td class="firstColumn"><b>Schema location</b></td>
13290 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13295 <td class="rt_lineRight"></td>
13298 <td class="rt_cornerBottomLeft"></td>
13299 <td class="rt_lineBottom"></td>
13300 <td class="rt_cornerBottomRight"></td>
13302 </table><a id="id15"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id14" target="mainFrame"
13303 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13304 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:param</a></b>/@name</span></div>
13307 <td class="rt_cornerTopLeft"></td>
13308 <td class="rt_lineTop"></td>
13309 <td class="rt_cornerTopRight"></td>
13312 <td class="rt_lineLeft"></td>
13313 <td class="rt_content">
13314 <table class="component">
13317 <td class="firstColumn"><b>Namespace</b></td>
13318 <td>No namespace</td>
13321 <td class="firstColumn"><b>Type</b></td>
13322 <td><b>xs:string</b></td>
13325 <td class="firstColumn">
13326 <div class="floatLeft"><b>Properties</b></div>
13327 <div class="floatRight"><input id="button_properties_id15" type="image" src="images/button_minus.gif"
13329 onclick="switchState('properties_id15');"
13330 class="control" /></div>
13333 <div id="properties_id15" style="display:block">
13334 <table class="propertiesTable">
13336 <td class="firstColumn">use:
13339 <td><b>required</b></td>
13346 <td class="firstColumn">
13347 <div class="floatLeft"><b>Used by</b></div>
13348 <div class="floatRight"><input id="button_usedBy_id15" type="image" src="images/button_minus.gif" value="-"
13349 onclick="switchState('usedBy_id15');"
13350 class="control" /></div>
13353 <div id="usedBy_id15" style="display:block">
13354 <table class="usedByTable">
13356 <td class="firstColumn">Element </td>
13357 <td><b><a href="vamsasDocument1.html#id14" target="mainFrame"
13358 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13359 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:param</a></b></td>
13366 <td class="firstColumn">
13367 <div class="floatLeft"><b>Source</b></div>
13368 <div class="floatRight"><input id="button_source_id15" type="image" src="images/button_minus.gif" value="-"
13369 onclick="switchState('source_id15');"
13370 class="control" /></div>
13373 <div id="source_id15" style="display:block">
13374 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13375 class="preWrapContainer">
13377 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
13384 <td class="firstColumn"><b>Schema location</b></td>
13385 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13390 <td class="rt_lineRight"></td>
13393 <td class="rt_cornerBottomLeft"></td>
13394 <td class="rt_lineBottom"></td>
13395 <td class="rt_cornerBottomRight"></td>
13397 </table><a id="id16"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id14" target="mainFrame"
13398 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13399 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:param</a></b>/@type</span></div>
13402 <td class="rt_cornerTopLeft"></td>
13403 <td class="rt_lineTop"></td>
13404 <td class="rt_cornerTopRight"></td>
13407 <td class="rt_lineLeft"></td>
13408 <td class="rt_content">
13409 <table class="component">
13412 <td class="firstColumn"><b>Namespace</b></td>
13413 <td>No namespace</td>
13416 <td class="firstColumn">
13417 <div class="floatLeft"><b>Annotations</b></div>
13418 <div class="floatRight"><input id="button_annotations_id16" type="image" src="images/button_minus.gif"
13420 onclick="switchState('annotations_id16');"
13421 class="control" /></div>
13424 <div id="annotations_id16" style="display:block">
13425 <div class="annotation">
13426 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13427 class="preWrapContainer">
13429 <td width="100%"><pre><span class="tokenText">The type specifies how the property will be parsed.</span><span class="tokenIndent">
13430 </span><span class="tokenText">Empty property strings are allowed, and can be used to prototype the</span><span class="tokenIndent">
13431 </span><span class="tokenText">input to a document. TODO: specify allowed types</span></pre></td>
13439 <td class="firstColumn"><b>Type</b></td>
13440 <td><b>xs:string</b></td>
13443 <td class="firstColumn">
13444 <div class="floatLeft"><b>Properties</b></div>
13445 <div class="floatRight"><input id="button_properties_id16" type="image" src="images/button_minus.gif"
13447 onclick="switchState('properties_id16');"
13448 class="control" /></div>
13451 <div id="properties_id16" style="display:block">
13452 <table class="propertiesTable">
13454 <td class="firstColumn">use:
13457 <td><b>required</b></td>
13464 <td class="firstColumn">
13465 <div class="floatLeft"><b>Used by</b></div>
13466 <div class="floatRight"><input id="button_usedBy_id16" type="image" src="images/button_minus.gif" value="-"
13467 onclick="switchState('usedBy_id16');"
13468 class="control" /></div>
13471 <div id="usedBy_id16" style="display:block">
13472 <table class="usedByTable">
13474 <td class="firstColumn">Element </td>
13475 <td><b><a href="vamsasDocument1.html#id14" target="mainFrame"
13476 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13477 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:param</a></b></td>
13484 <td class="firstColumn">
13485 <div class="floatLeft"><b>Source</b></div>
13486 <div class="floatRight"><input id="button_source_id16" type="image" src="images/button_minus.gif" value="-"
13487 onclick="switchState('source_id16');"
13488 class="control" /></div>
13491 <div id="source_id16" style="display:block">
13492 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13493 class="preWrapContainer">
13495 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
13496 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
13497 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">The type specifies how the property will be parsed. Empty property strings are allowed, and can be used to prototype the input to a document. TODO: specify allowed types</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
13498 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
13499 </span><span class="tokenElement"></xs:attribute></span></pre></td>
13506 <td class="firstColumn"><b>Schema location</b></td>
13507 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13512 <td class="rt_lineRight"></td>
13515 <td class="rt_cornerBottomLeft"></td>
13516 <td class="rt_lineBottom"></td>
13517 <td class="rt_cornerBottomRight"></td>
13519 </table><a id="id20"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id19" target="mainFrame"
13520 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13521 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:pos</a></b>/<b><a href="vamsasDocument1.html#id18" target="mainFrame"
13522 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13523 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b>/@i</span></div>
13526 <td class="rt_cornerTopLeft"></td>
13527 <td class="rt_lineTop"></td>
13528 <td class="rt_cornerTopRight"></td>
13531 <td class="rt_lineLeft"></td>
13532 <td class="rt_content">
13533 <table class="component">
13536 <td class="firstColumn"><b>Namespace</b></td>
13537 <td>No namespace</td>
13540 <td class="firstColumn"><b>Type</b></td>
13541 <td><b>xs:int</b></td>
13544 <td class="firstColumn">
13545 <div class="floatLeft"><b>Properties</b></div>
13546 <div class="floatRight"><input id="button_properties_id20" type="image" src="images/button_minus.gif"
13548 onclick="switchState('properties_id20');"
13549 class="control" /></div>
13552 <div id="properties_id20" style="display:block">
13553 <table class="propertiesTable">
13555 <td class="firstColumn">use:
13558 <td><b>required</b></td>
13565 <td class="firstColumn">
13566 <div class="floatLeft"><b>Used by</b></div>
13567 <div class="floatRight"><input id="button_usedBy_id20" type="image" src="images/button_minus.gif" value="-"
13568 onclick="switchState('usedBy_id20');"
13569 class="control" /></div>
13572 <div id="usedBy_id20" style="display:block">
13573 <table class="usedByTable">
13575 <td class="firstColumn">Element </td>
13576 <td><b><a href="vamsasDocument1.html#id19" target="mainFrame"
13577 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13578 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType/vamsas:pos</a></b></td>
13585 <td class="firstColumn">
13586 <div class="floatLeft"><b>Source</b></div>
13587 <div class="floatRight"><input id="button_source_id20" type="image" src="images/button_minus.gif" value="-"
13588 onclick="switchState('source_id20');"
13589 class="control" /></div>
13592 <div id="source_id20" style="display:block">
13593 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13594 class="preWrapContainer">
13596 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"i"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
13603 <td class="firstColumn"><b>Schema location</b></td>
13604 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13609 <td class="rt_lineRight"></td>
13612 <td class="rt_cornerBottomLeft"></td>
13613 <td class="rt_lineBottom"></td>
13614 <td class="rt_cornerBottomRight"></td>
13616 </table><a id="id22"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id21" target="mainFrame"
13617 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13618 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>/<b><a href="vamsasDocument1.html#id18" target="mainFrame"
13619 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13620 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b>/@start</span></div>
13623 <td class="rt_cornerTopLeft"></td>
13624 <td class="rt_lineTop"></td>
13625 <td class="rt_cornerTopRight"></td>
13628 <td class="rt_lineLeft"></td>
13629 <td class="rt_content">
13630 <table class="component">
13633 <td class="firstColumn"><b>Namespace</b></td>
13634 <td>No namespace</td>
13637 <td class="firstColumn"><b>Type</b></td>
13638 <td><b>xs:int</b></td>
13641 <td class="firstColumn">
13642 <div class="floatLeft"><b>Properties</b></div>
13643 <div class="floatRight"><input id="button_properties_id22" type="image" src="images/button_minus.gif"
13645 onclick="switchState('properties_id22');"
13646 class="control" /></div>
13649 <div id="properties_id22" style="display:block">
13650 <table class="propertiesTable">
13652 <td class="firstColumn">use:
13655 <td><b>required</b></td>
13662 <td class="firstColumn">
13663 <div class="floatLeft"><b>Used by</b></div>
13664 <div class="floatRight"><input id="button_usedBy_id22" type="image" src="images/button_minus.gif" value="-"
13665 onclick="switchState('usedBy_id22');"
13666 class="control" /></div>
13669 <div id="usedBy_id22" style="display:block">
13670 <table class="usedByTable">
13672 <td class="firstColumn">Element </td>
13673 <td><b><a href="vamsasDocument1.html#id21" target="mainFrame"
13674 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13675 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType/vamsas:seg</a></b></td>
13682 <td class="firstColumn">
13683 <div class="floatLeft"><b>Source</b></div>
13684 <div class="floatRight"><input id="button_source_id22" type="image" src="images/button_minus.gif" value="-"
13685 onclick="switchState('source_id22');"
13686 class="control" /></div>
13689 <div id="source_id22" style="display:block">
13690 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13691 class="preWrapContainer">
13693 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"start"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
13700 <td class="firstColumn"><b>Schema location</b></td>
13701 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13706 <td class="rt_lineRight"></td>
13709 <td class="rt_cornerBottomLeft"></td>
13710 <td class="rt_lineBottom"></td>
13711 <td class="rt_cornerBottomRight"></td>
13713 </table><a id="id23"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id21" target="mainFrame"
13714 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13715 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>/<b><a href="vamsasDocument1.html#id18" target="mainFrame"
13716 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13717 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b>/@end</span></div>
13720 <td class="rt_cornerTopLeft"></td>
13721 <td class="rt_lineTop"></td>
13722 <td class="rt_cornerTopRight"></td>
13725 <td class="rt_lineLeft"></td>
13726 <td class="rt_content">
13727 <table class="component">
13730 <td class="firstColumn"><b>Namespace</b></td>
13731 <td>No namespace</td>
13734 <td class="firstColumn"><b>Type</b></td>
13735 <td><b>xs:int</b></td>
13738 <td class="firstColumn">
13739 <div class="floatLeft"><b>Properties</b></div>
13740 <div class="floatRight"><input id="button_properties_id23" type="image" src="images/button_minus.gif"
13742 onclick="switchState('properties_id23');"
13743 class="control" /></div>
13746 <div id="properties_id23" style="display:block">
13747 <table class="propertiesTable">
13749 <td class="firstColumn">use:
13752 <td><b>required</b></td>
13759 <td class="firstColumn">
13760 <div class="floatLeft"><b>Used by</b></div>
13761 <div class="floatRight"><input id="button_usedBy_id23" type="image" src="images/button_minus.gif" value="-"
13762 onclick="switchState('usedBy_id23');"
13763 class="control" /></div>
13766 <div id="usedBy_id23" style="display:block">
13767 <table class="usedByTable">
13769 <td class="firstColumn">Element </td>
13770 <td><b><a href="vamsasDocument1.html#id21" target="mainFrame"
13771 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13772 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType/vamsas:seg</a></b></td>
13779 <td class="firstColumn">
13780 <div class="floatLeft"><b>Source</b></div>
13781 <div class="floatRight"><input id="button_source_id23" type="image" src="images/button_minus.gif" value="-"
13782 onclick="switchState('source_id23');"
13783 class="control" /></div>
13786 <div id="source_id23" style="display:block">
13787 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13788 class="preWrapContainer">
13790 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"end"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:int"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
13797 <td class="firstColumn"><b>Schema location</b></td>
13798 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13803 <td class="rt_lineRight"></td>
13806 <td class="rt_cornerBottomLeft"></td>
13807 <td class="rt_lineBottom"></td>
13808 <td class="rt_cornerBottomRight"></td>
13810 </table><a id="id24"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id21" target="mainFrame"
13811 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13812 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:seg</a></b>/<b><a href="vamsasDocument1.html#id18" target="mainFrame"
13813 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13814 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType</a></b>/@inclusive</span></div>
13817 <td class="rt_cornerTopLeft"></td>
13818 <td class="rt_lineTop"></td>
13819 <td class="rt_cornerTopRight"></td>
13822 <td class="rt_lineLeft"></td>
13823 <td class="rt_content">
13824 <table class="component">
13827 <td class="firstColumn"><b>Namespace</b></td>
13828 <td>No namespace</td>
13831 <td class="firstColumn">
13832 <div class="floatLeft"><b>Annotations</b></div>
13833 <div class="floatRight"><input id="button_annotations_id24" type="image" src="images/button_minus.gif"
13835 onclick="switchState('annotations_id24');"
13836 class="control" /></div>
13839 <div id="annotations_id24" style="display:block">
13840 <div class="annotation">
13841 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13842 class="preWrapContainer">
13844 <td width="100%"><pre><span class="tokenText">when false, a consecutive range like 'start=1, end=2'</span><span class="tokenIndent">
13845 </span><span class="tokenText">means the region lying after position 1 and before position 2</span></pre></td>
13853 <td class="firstColumn"><b>Type</b></td>
13854 <td><b>xs:boolean</b></td>
13857 <td class="firstColumn">
13858 <div class="floatLeft"><b>Properties</b></div>
13859 <div class="floatRight"><input id="button_properties_id24" type="image" src="images/button_minus.gif"
13861 onclick="switchState('properties_id24');"
13862 class="control" /></div>
13865 <div id="properties_id24" style="display:block">
13866 <table class="propertiesTable">
13868 <td class="firstColumn">use:
13871 <td><b>required</b></td>
13878 <td class="firstColumn">
13879 <div class="floatLeft"><b>Used by</b></div>
13880 <div class="floatRight"><input id="button_usedBy_id24" type="image" src="images/button_minus.gif" value="-"
13881 onclick="switchState('usedBy_id24');"
13882 class="control" /></div>
13885 <div id="usedBy_id24" style="display:block">
13886 <table class="usedByTable">
13888 <td class="firstColumn">Element </td>
13889 <td><b><a href="vamsasDocument1.html#id21" target="mainFrame"
13890 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13891 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeType/vamsas:seg</a></b></td>
13898 <td class="firstColumn">
13899 <div class="floatLeft"><b>Source</b></div>
13900 <div class="floatRight"><input id="button_source_id24" type="image" src="images/button_minus.gif" value="-"
13901 onclick="switchState('source_id24');"
13902 class="control" /></div>
13905 <div id="source_id24" style="display:block">
13906 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
13907 class="preWrapContainer">
13909 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"inclusive"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
13910 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
13911 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">when false, a consecutive range like 'start=1, end=2' means the region lying after position 1 and before position 2</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
13912 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
13913 </span><span class="tokenElement"></xs:attribute></span></pre></td>
13920 <td class="firstColumn"><b>Schema location</b></td>
13921 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
13926 <td class="rt_lineRight"></td>
13929 <td class="rt_cornerBottomLeft"></td>
13930 <td class="rt_lineBottom"></td>
13931 <td class="rt_cornerBottomRight"></td>
13933 </table><a id="id25"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id17" target="mainFrame"
13934 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13935 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input</a></b>/@name</span></div>
13938 <td class="rt_cornerTopLeft"></td>
13939 <td class="rt_lineTop"></td>
13940 <td class="rt_cornerTopRight"></td>
13943 <td class="rt_lineLeft"></td>
13944 <td class="rt_content">
13945 <table class="component">
13948 <td class="firstColumn"><b>Namespace</b></td>
13949 <td>No namespace</td>
13952 <td class="firstColumn"><b>Type</b></td>
13953 <td><b>xs:string</b></td>
13956 <td class="firstColumn">
13957 <div class="floatLeft"><b>Properties</b></div>
13958 <div class="floatRight"><input id="button_properties_id25" type="image" src="images/button_minus.gif"
13960 onclick="switchState('properties_id25');"
13961 class="control" /></div>
13964 <div id="properties_id25" style="display:block">
13965 <table class="propertiesTable">
13967 <td class="firstColumn">use:
13970 <td><b>required</b></td>
13977 <td class="firstColumn">
13978 <div class="floatLeft"><b>Used by</b></div>
13979 <div class="floatRight"><input id="button_usedBy_id25" type="image" src="images/button_minus.gif" value="-"
13980 onclick="switchState('usedBy_id25');"
13981 class="control" /></div>
13984 <div id="usedBy_id25" style="display:block">
13985 <table class="usedByTable">
13987 <td class="firstColumn">Element </td>
13988 <td><b><a href="vamsasDocument1.html#id17" target="mainFrame"
13989 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
13990 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input</a></b></td>
13997 <td class="firstColumn">
13998 <div class="floatLeft"><b>Source</b></div>
13999 <div class="floatRight"><input id="button_source_id25" type="image" src="images/button_minus.gif" value="-"
14000 onclick="switchState('source_id25');"
14001 class="control" /></div>
14004 <div id="source_id25" style="display:block">
14005 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14006 class="preWrapContainer">
14008 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
14015 <td class="firstColumn"><b>Schema location</b></td>
14016 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14021 <td class="rt_lineRight"></td>
14024 <td class="rt_cornerBottomLeft"></td>
14025 <td class="rt_lineBottom"></td>
14026 <td class="rt_cornerBottomRight"></td>
14028 </table><a id="id26"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id17" target="mainFrame"
14029 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14030 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input</a></b>/@objRef</span></div>
14033 <td class="rt_cornerTopLeft"></td>
14034 <td class="rt_lineTop"></td>
14035 <td class="rt_cornerTopRight"></td>
14038 <td class="rt_lineLeft"></td>
14039 <td class="rt_content">
14040 <table class="component">
14043 <td class="firstColumn"><b>Namespace</b></td>
14044 <td>No namespace</td>
14047 <td class="firstColumn">
14048 <div class="floatLeft"><b>Annotations</b></div>
14049 <div class="floatRight"><input id="button_annotations_id26" type="image" src="images/button_minus.gif"
14051 onclick="switchState('annotations_id26');"
14052 class="control" /></div>
14055 <div id="annotations_id26" style="display:block">
14056 <div class="annotation">
14057 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14058 class="preWrapContainer">
14060 <td width="100%"><pre><span class="tokenText">Reference Frame for rangeType specfication</span></pre></td>
14068 <td class="firstColumn"><b>Type</b></td>
14069 <td><b>xs:IDREFS</b></td>
14072 <td class="firstColumn">
14073 <div class="floatLeft"><b>Properties</b></div>
14074 <div class="floatRight"><input id="button_properties_id26" type="image" src="images/button_minus.gif"
14076 onclick="switchState('properties_id26');"
14077 class="control" /></div>
14080 <div id="properties_id26" style="display:block">
14081 <table class="propertiesTable">
14083 <td class="firstColumn">use:
14086 <td><b>optional</b></td>
14093 <td class="firstColumn">
14094 <div class="floatLeft"><b>Used by</b></div>
14095 <div class="floatRight"><input id="button_usedBy_id26" type="image" src="images/button_minus.gif" value="-"
14096 onclick="switchState('usedBy_id26');"
14097 class="control" /></div>
14100 <div id="usedBy_id26" style="display:block">
14101 <table class="usedByTable">
14103 <td class="firstColumn">Element </td>
14104 <td><b><a href="vamsasDocument1.html#id17" target="mainFrame"
14105 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14106 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:input</a></b></td>
14113 <td class="firstColumn">
14114 <div class="floatLeft"><b>Source</b></div>
14115 <div class="floatRight"><input id="button_source_id26" type="image" src="images/button_minus.gif" value="-"
14116 onclick="switchState('source_id26');"
14117 class="control" /></div>
14120 <div id="source_id26" style="display:block">
14121 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14122 class="preWrapContainer">
14124 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"objRef"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
14125 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
14126 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Reference Frame for rangeType specfication</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
14127 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
14128 </span><span class="tokenElement"></xs:attribute></span></pre></td>
14135 <td class="firstColumn"><b>Schema location</b></td>
14136 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14141 <td class="rt_lineRight"></td>
14144 <td class="rt_cornerBottomLeft"></td>
14145 <td class="rt_lineBottom"></td>
14146 <td class="rt_cornerBottomRight"></td>
14148 </table><a id="id27"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id6" target="mainFrame"
14149 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14150 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:entry</a></b>/<b><a href="vamsasDocument1.html#id5" target="mainFrame"
14151 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14152 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance</a></b>/@id</span></div>
14155 <td class="rt_cornerTopLeft"></td>
14156 <td class="rt_lineTop"></td>
14157 <td class="rt_cornerTopRight"></td>
14160 <td class="rt_lineLeft"></td>
14161 <td class="rt_content">
14162 <table class="component">
14165 <td class="firstColumn"><b>Namespace</b></td>
14166 <td>No namespace</td>
14169 <td class="firstColumn">
14170 <div class="floatLeft"><b>Annotations</b></div>
14171 <div class="floatRight"><input id="button_annotations_id27" type="image" src="images/button_minus.gif"
14173 onclick="switchState('annotations_id27');"
14174 class="control" /></div>
14177 <div id="annotations_id27" style="display:block">
14178 <div class="annotation">
14179 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14180 class="preWrapContainer">
14182 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
14190 <td class="firstColumn"><b>Type</b></td>
14191 <td><b>xs:ID</b></td>
14194 <td class="firstColumn">
14195 <div class="floatLeft"><b>Properties</b></div>
14196 <div class="floatRight"><input id="button_properties_id27" type="image" src="images/button_minus.gif"
14198 onclick="switchState('properties_id27');"
14199 class="control" /></div>
14202 <div id="properties_id27" style="display:block">
14203 <table class="propertiesTable">
14205 <td class="firstColumn">use:
14208 <td><b>optional</b></td>
14215 <td class="firstColumn">
14216 <div class="floatLeft"><b>Used by</b></div>
14217 <div class="floatRight"><input id="button_usedBy_id27" type="image" src="images/button_minus.gif" value="-"
14218 onclick="switchState('usedBy_id27');"
14219 class="control" /></div>
14222 <div id="usedBy_id27" style="display:block">
14223 <table class="usedByTable">
14225 <td class="firstColumn">Element </td>
14226 <td><b><a href="vamsasDocument1.html#id6" target="mainFrame"
14227 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14228 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Provenance/vamsas:entry</a></b></td>
14235 <td class="firstColumn">
14236 <div class="floatLeft"><b>Source</b></div>
14237 <div class="floatRight"><input id="button_source_id27" type="image" src="images/button_minus.gif" value="-"
14238 onclick="switchState('source_id27');"
14239 class="control" /></div>
14242 <div id="source_id27" style="display:block">
14243 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14244 class="preWrapContainer">
14246 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
14247 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
14248 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
14249 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
14250 </span><span class="tokenElement"></xs:attribute></span></pre></td>
14257 <td class="firstColumn"><b>Schema location</b></td>
14258 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14263 <td class="rt_lineRight"></td>
14266 <td class="rt_cornerBottomLeft"></td>
14267 <td class="rt_lineBottom"></td>
14268 <td class="rt_cornerBottomRight"></td>
14270 </table><a id="id32"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id31" target="mainFrame"
14271 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14272 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:newick</a></b>/<b><a href="vamsasDocument1.html#id29" target="mainFrame"
14273 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14274 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@title</span></div>
14277 <td class="rt_cornerTopLeft"></td>
14278 <td class="rt_lineTop"></td>
14279 <td class="rt_cornerTopRight"></td>
14282 <td class="rt_lineLeft"></td>
14283 <td class="rt_content">
14284 <table class="component">
14287 <td class="firstColumn"><b>Namespace</b></td>
14288 <td>No namespace</td>
14291 <td class="firstColumn"><b>Type</b></td>
14292 <td><b>xs:string</b></td>
14295 <td class="firstColumn">
14296 <div class="floatLeft"><b>Properties</b></div>
14297 <div class="floatRight"><input id="button_properties_id32" type="image" src="images/button_minus.gif"
14299 onclick="switchState('properties_id32');"
14300 class="control" /></div>
14303 <div id="properties_id32" style="display:block">
14304 <table class="propertiesTable">
14306 <td class="firstColumn">use:
14309 <td><b>optional</b></td>
14316 <td class="firstColumn">
14317 <div class="floatLeft"><b>Used by</b></div>
14318 <div class="floatRight"><input id="button_usedBy_id32" type="image" src="images/button_minus.gif" value="-"
14319 onclick="switchState('usedBy_id32');"
14320 class="control" /></div>
14323 <div id="usedBy_id32" style="display:block">
14324 <table class="usedByTable">
14326 <td class="firstColumn">Element </td>
14327 <td><b><a href="vamsasDocument1.html#id31" target="mainFrame"
14328 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14329 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:newick</a></b></td>
14336 <td class="firstColumn">
14337 <div class="floatLeft"><b>Source</b></div>
14338 <div class="floatRight"><input id="button_source_id32" type="image" src="images/button_minus.gif" value="-"
14339 onclick="switchState('source_id32');"
14340 class="control" /></div>
14343 <div id="source_id32" style="display:block">
14344 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14345 class="preWrapContainer">
14347 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"title"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
14354 <td class="firstColumn"><b>Schema location</b></td>
14355 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14360 <td class="rt_lineRight"></td>
14363 <td class="rt_cornerBottomLeft"></td>
14364 <td class="rt_lineBottom"></td>
14365 <td class="rt_cornerBottomRight"></td>
14367 </table><a id="id33"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id31" target="mainFrame"
14368 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14369 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:newick</a></b>/<b><a href="vamsasDocument1.html#id29" target="mainFrame"
14370 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14371 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@id</span></div>
14374 <td class="rt_cornerTopLeft"></td>
14375 <td class="rt_lineTop"></td>
14376 <td class="rt_cornerTopRight"></td>
14379 <td class="rt_lineLeft"></td>
14380 <td class="rt_content">
14381 <table class="component">
14384 <td class="firstColumn"><b>Namespace</b></td>
14385 <td>No namespace</td>
14388 <td class="firstColumn">
14389 <div class="floatLeft"><b>Annotations</b></div>
14390 <div class="floatRight"><input id="button_annotations_id33" type="image" src="images/button_minus.gif"
14392 onclick="switchState('annotations_id33');"
14393 class="control" /></div>
14396 <div id="annotations_id33" style="display:block">
14397 <div class="annotation">
14398 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14399 class="preWrapContainer">
14401 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
14409 <td class="firstColumn"><b>Type</b></td>
14410 <td><b>xs:ID</b></td>
14413 <td class="firstColumn">
14414 <div class="floatLeft"><b>Properties</b></div>
14415 <div class="floatRight"><input id="button_properties_id33" type="image" src="images/button_minus.gif"
14417 onclick="switchState('properties_id33');"
14418 class="control" /></div>
14421 <div id="properties_id33" style="display:block">
14422 <table class="propertiesTable">
14424 <td class="firstColumn">use:
14427 <td><b>optional</b></td>
14434 <td class="firstColumn">
14435 <div class="floatLeft"><b>Used by</b></div>
14436 <div class="floatRight"><input id="button_usedBy_id33" type="image" src="images/button_minus.gif" value="-"
14437 onclick="switchState('usedBy_id33');"
14438 class="control" /></div>
14441 <div id="usedBy_id33" style="display:block">
14442 <table class="usedByTable">
14444 <td class="firstColumn">Element </td>
14445 <td><b><a href="vamsasDocument1.html#id31" target="mainFrame"
14446 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14447 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:newick</a></b></td>
14454 <td class="firstColumn">
14455 <div class="floatLeft"><b>Source</b></div>
14456 <div class="floatRight"><input id="button_source_id33" type="image" src="images/button_minus.gif" value="-"
14457 onclick="switchState('source_id33');"
14458 class="control" /></div>
14461 <div id="source_id33" style="display:block">
14462 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14463 class="preWrapContainer">
14465 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
14466 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
14467 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
14468 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
14469 </span><span class="tokenElement"></xs:attribute></span></pre></td>
14476 <td class="firstColumn"><b>Schema location</b></td>
14477 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14482 <td class="rt_lineRight"></td>
14485 <td class="rt_cornerBottomLeft"></td>
14486 <td class="rt_lineBottom"></td>
14487 <td class="rt_cornerBottomRight"></td>
14489 </table><a id="id34"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id31" target="mainFrame"
14490 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14491 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:newick</a></b>/<b><a href="vamsasDocument1.html#id29" target="mainFrame"
14492 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14493 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@modifiable</span></div>
14496 <td class="rt_cornerTopLeft"></td>
14497 <td class="rt_lineTop"></td>
14498 <td class="rt_cornerTopRight"></td>
14501 <td class="rt_lineLeft"></td>
14502 <td class="rt_content">
14503 <table class="component">
14506 <td class="firstColumn"><b>Namespace</b></td>
14507 <td>No namespace</td>
14510 <td class="firstColumn"><b>Type</b></td>
14511 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
14512 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14513 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
14516 <td class="firstColumn">
14517 <div class="floatLeft"><b>Properties</b></div>
14518 <div class="floatRight"><input id="button_properties_id34" type="image" src="images/button_minus.gif"
14520 onclick="switchState('properties_id34');"
14521 class="control" /></div>
14524 <div id="properties_id34" style="display:block">
14525 <table class="propertiesTable">
14527 <td class="firstColumn">use:
14530 <td><b>optional</b></td>
14537 <td class="firstColumn">
14538 <div class="floatLeft"><b>Used by</b></div>
14539 <div class="floatRight"><input id="button_usedBy_id34" type="image" src="images/button_minus.gif" value="-"
14540 onclick="switchState('usedBy_id34');"
14541 class="control" /></div>
14544 <div id="usedBy_id34" style="display:block">
14545 <table class="usedByTable">
14547 <td class="firstColumn">Element </td>
14548 <td><b><a href="vamsasDocument1.html#id31" target="mainFrame"
14549 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14550 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:newick</a></b></td>
14557 <td class="firstColumn">
14558 <div class="floatLeft"><b>Source</b></div>
14559 <div class="floatRight"><input id="button_source_id34" type="image" src="images/button_minus.gif" value="-"
14560 onclick="switchState('source_id34');"
14561 class="control" /></div>
14564 <div id="source_id34" style="display:block">
14565 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14566 class="preWrapContainer">
14568 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
14575 <td class="firstColumn"><b>Schema location</b></td>
14576 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14581 <td class="rt_lineRight"></td>
14584 <td class="rt_cornerBottomLeft"></td>
14585 <td class="rt_lineBottom"></td>
14586 <td class="rt_cornerBottomRight"></td>
14588 </table><a id="id42"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id41" target="mainFrame"
14589 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14590 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:referenceType</a></b>/@id</span></div>
14593 <td class="rt_cornerTopLeft"></td>
14594 <td class="rt_lineTop"></td>
14595 <td class="rt_cornerTopRight"></td>
14598 <td class="rt_lineLeft"></td>
14599 <td class="rt_content">
14600 <table class="component">
14603 <td class="firstColumn"><b>Namespace</b></td>
14604 <td>No namespace</td>
14607 <td class="firstColumn">
14608 <div class="floatLeft"><b>Annotations</b></div>
14609 <div class="floatRight"><input id="button_annotations_id42" type="image" src="images/button_minus.gif"
14611 onclick="switchState('annotations_id42');"
14612 class="control" /></div>
14615 <div id="annotations_id42" style="display:block">
14616 <div class="annotation">
14617 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14618 class="preWrapContainer">
14620 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
14628 <td class="firstColumn"><b>Type</b></td>
14629 <td><b>xs:ID</b></td>
14632 <td class="firstColumn">
14633 <div class="floatLeft"><b>Properties</b></div>
14634 <div class="floatRight"><input id="button_properties_id42" type="image" src="images/button_minus.gif"
14636 onclick="switchState('properties_id42');"
14637 class="control" /></div>
14640 <div id="properties_id42" style="display:block">
14641 <table class="propertiesTable">
14643 <td class="firstColumn">use:
14646 <td><b>optional</b></td>
14653 <td class="firstColumn">
14654 <div class="floatLeft"><b>Used by</b></div>
14655 <div class="floatRight"><input id="button_usedBy_id42" type="image" src="images/button_minus.gif" value="-"
14656 onclick="switchState('usedBy_id42');"
14657 class="control" /></div>
14660 <div id="usedBy_id42" style="display:block">
14661 <table class="usedByTable">
14663 <td class="firstColumn">Complex Type </td>
14664 <td><b><a href="vamsasDocument1.html#id41" target="mainFrame"
14665 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14666 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:referenceType</a></b></td>
14673 <td class="firstColumn">
14674 <div class="floatLeft"><b>Source</b></div>
14675 <div class="floatRight"><input id="button_source_id42" type="image" src="images/button_minus.gif" value="-"
14676 onclick="switchState('source_id42');"
14677 class="control" /></div>
14680 <div id="source_id42" style="display:block">
14681 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14682 class="preWrapContainer">
14684 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
14685 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
14686 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
14687 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
14688 </span><span class="tokenElement"></xs:attribute></span></pre></td>
14695 <td class="firstColumn"><b>Schema location</b></td>
14696 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14701 <td class="rt_lineRight"></td>
14704 <td class="rt_cornerBottomLeft"></td>
14705 <td class="rt_lineBottom"></td>
14706 <td class="rt_cornerBottomRight"></td>
14708 </table><a id="id43"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id41" target="mainFrame"
14709 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14710 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:referenceType</a></b>/@refs</span></div>
14713 <td class="rt_cornerTopLeft"></td>
14714 <td class="rt_lineTop"></td>
14715 <td class="rt_cornerTopRight"></td>
14718 <td class="rt_lineLeft"></td>
14719 <td class="rt_content">
14720 <table class="component">
14723 <td class="firstColumn"><b>Namespace</b></td>
14724 <td>No namespace</td>
14727 <td class="firstColumn">
14728 <div class="floatLeft"><b>Annotations</b></div>
14729 <div class="floatRight"><input id="button_annotations_id43" type="image" src="images/button_minus.gif"
14731 onclick="switchState('annotations_id43');"
14732 class="control" /></div>
14735 <div id="annotations_id43" style="display:block">
14736 <div class="annotation">
14737 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14738 class="preWrapContainer">
14740 <td width="100%"><pre><span class="tokenText">List of one or more vamsas object</span><span class="tokenIndent">
14741 </span><span class="tokenText">references</span></pre></td>
14749 <td class="firstColumn"><b>Type</b></td>
14750 <td><b>xs:IDREFS</b></td>
14753 <td class="firstColumn">
14754 <div class="floatLeft"><b>Properties</b></div>
14755 <div class="floatRight"><input id="button_properties_id43" type="image" src="images/button_minus.gif"
14757 onclick="switchState('properties_id43');"
14758 class="control" /></div>
14761 <div id="properties_id43" style="display:block">
14762 <table class="propertiesTable">
14764 <td class="firstColumn">content:
14767 <td><b>simple</b></td>
14774 <td class="firstColumn">
14775 <div class="floatLeft"><b>Used by</b></div>
14776 <div class="floatRight"><input id="button_usedBy_id43" type="image" src="images/button_minus.gif" value="-"
14777 onclick="switchState('usedBy_id43');"
14778 class="control" /></div>
14781 <div id="usedBy_id43" style="display:block">
14782 <table class="usedByTable">
14784 <td class="firstColumn">Complex Type </td>
14785 <td><b><a href="vamsasDocument1.html#id41" target="mainFrame"
14786 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14787 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:referenceType</a></b></td>
14794 <td class="firstColumn">
14795 <div class="floatLeft"><b>Source</b></div>
14796 <div class="floatRight"><input id="button_source_id43" type="image" src="images/button_minus.gif" value="-"
14797 onclick="switchState('source_id43');"
14798 class="control" /></div>
14801 <div id="source_id43" style="display:block">
14802 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14803 class="preWrapContainer">
14805 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"refs"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenElement">></span><span class="tokenIndent">
14806 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
14807 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">List of one or more vamsas object references</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
14808 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
14809 </span><span class="tokenElement"></xs:attribute></span></pre></td>
14816 <td class="firstColumn"><b>Schema location</b></td>
14817 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14822 <td class="rt_lineRight"></td>
14825 <td class="rt_cornerBottomLeft"></td>
14826 <td class="rt_lineBottom"></td>
14827 <td class="rt_cornerBottomRight"></td>
14829 </table><a id="id44"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id37" target="mainFrame"
14830 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14831 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b>/@id</span></div>
14834 <td class="rt_cornerTopLeft"></td>
14835 <td class="rt_lineTop"></td>
14836 <td class="rt_cornerTopRight"></td>
14839 <td class="rt_lineLeft"></td>
14840 <td class="rt_content">
14841 <table class="component">
14844 <td class="firstColumn"><b>Namespace</b></td>
14845 <td>No namespace</td>
14848 <td class="firstColumn">
14849 <div class="floatLeft"><b>Annotations</b></div>
14850 <div class="floatRight"><input id="button_annotations_id44" type="image" src="images/button_minus.gif"
14852 onclick="switchState('annotations_id44');"
14853 class="control" /></div>
14856 <div id="annotations_id44" style="display:block">
14857 <div class="annotation">
14858 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14859 class="preWrapContainer">
14861 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
14869 <td class="firstColumn"><b>Type</b></td>
14870 <td><b>xs:ID</b></td>
14873 <td class="firstColumn">
14874 <div class="floatLeft"><b>Properties</b></div>
14875 <div class="floatRight"><input id="button_properties_id44" type="image" src="images/button_minus.gif"
14877 onclick="switchState('properties_id44');"
14878 class="control" /></div>
14881 <div id="properties_id44" style="display:block">
14882 <table class="propertiesTable">
14884 <td class="firstColumn">use:
14887 <td><b>optional</b></td>
14894 <td class="firstColumn">
14895 <div class="floatLeft"><b>Used by</b></div>
14896 <div class="floatRight"><input id="button_usedBy_id44" type="image" src="images/button_minus.gif" value="-"
14897 onclick="switchState('usedBy_id44');"
14898 class="control" /></div>
14901 <div id="usedBy_id44" style="display:block">
14902 <table class="usedByTable">
14904 <td class="firstColumn">Complex Type </td>
14905 <td><b><a href="vamsasDocument1.html#id37" target="mainFrame"
14906 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14907 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b></td>
14914 <td class="firstColumn">
14915 <div class="floatLeft"><b>Source</b></div>
14916 <div class="floatRight"><input id="button_source_id44" type="image" src="images/button_minus.gif" value="-"
14917 onclick="switchState('source_id44');"
14918 class="control" /></div>
14921 <div id="source_id44" style="display:block">
14922 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
14923 class="preWrapContainer">
14925 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
14926 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
14927 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
14928 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
14929 </span><span class="tokenElement"></xs:attribute></span></pre></td>
14936 <td class="firstColumn"><b>Schema location</b></td>
14937 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
14942 <td class="rt_lineRight"></td>
14945 <td class="rt_cornerBottomLeft"></td>
14946 <td class="rt_lineBottom"></td>
14947 <td class="rt_cornerBottomRight"></td>
14949 </table><a id="id45"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id37" target="mainFrame"
14950 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14951 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b>/@modifiable</span></div>
14954 <td class="rt_cornerTopLeft"></td>
14955 <td class="rt_lineTop"></td>
14956 <td class="rt_cornerTopRight"></td>
14959 <td class="rt_lineLeft"></td>
14960 <td class="rt_content">
14961 <table class="component">
14964 <td class="firstColumn"><b>Namespace</b></td>
14965 <td>No namespace</td>
14968 <td class="firstColumn"><b>Type</b></td>
14969 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
14970 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
14971 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
14974 <td class="firstColumn">
14975 <div class="floatLeft"><b>Properties</b></div>
14976 <div class="floatRight"><input id="button_properties_id45" type="image" src="images/button_minus.gif"
14978 onclick="switchState('properties_id45');"
14979 class="control" /></div>
14982 <div id="properties_id45" style="display:block">
14983 <table class="propertiesTable">
14985 <td class="firstColumn">use:
14988 <td><b>optional</b></td>
14995 <td class="firstColumn">
14996 <div class="floatLeft"><b>Used by</b></div>
14997 <div class="floatRight"><input id="button_usedBy_id45" type="image" src="images/button_minus.gif" value="-"
14998 onclick="switchState('usedBy_id45');"
14999 class="control" /></div>
15002 <div id="usedBy_id45" style="display:block">
15003 <table class="usedByTable">
15005 <td class="firstColumn">Complex Type </td>
15006 <td><b><a href="vamsasDocument1.html#id37" target="mainFrame"
15007 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15008 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:nodeType</a></b></td>
15015 <td class="firstColumn">
15016 <div class="floatLeft"><b>Source</b></div>
15017 <div class="floatRight"><input id="button_source_id45" type="image" src="images/button_minus.gif" value="-"
15018 onclick="switchState('source_id45');"
15019 class="control" /></div>
15022 <div id="source_id45" style="display:block">
15023 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15024 class="preWrapContainer">
15026 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
15033 <td class="firstColumn"><b>Schema location</b></td>
15034 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15039 <td class="rt_lineRight"></td>
15042 <td class="rt_cornerBottomLeft"></td>
15043 <td class="rt_lineBottom"></td>
15044 <td class="rt_cornerBottomRight"></td>
15046 </table><a id="id46"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id36" target="mainFrame"
15047 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15048 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:treenode</a></b>/<b><a href="vamsasDocument1.html#id29" target="mainFrame"
15049 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15050 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@treeId</span></div>
15053 <td class="rt_cornerTopLeft"></td>
15054 <td class="rt_lineTop"></td>
15055 <td class="rt_cornerTopRight"></td>
15058 <td class="rt_lineLeft"></td>
15059 <td class="rt_content">
15060 <table class="component">
15063 <td class="firstColumn"><b>Namespace</b></td>
15064 <td>No namespace</td>
15067 <td class="firstColumn">
15068 <div class="floatLeft"><b>Annotations</b></div>
15069 <div class="floatRight"><input id="button_annotations_id46" type="image" src="images/button_minus.gif"
15071 onclick="switchState('annotations_id46');"
15072 class="control" /></div>
15075 <div id="annotations_id46" style="display:block">
15076 <div class="annotation">
15077 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15078 class="preWrapContainer">
15080 <td width="100%"><pre><span class="tokenText">reference to one or more trees containing</span><span class="tokenIndent">
15081 </span><span class="tokenText">the node being described.</span></pre></td>
15089 <td class="firstColumn"><b>Type</b></td>
15090 <td><b>xs:IDREFS</b></td>
15093 <td class="firstColumn">
15094 <div class="floatLeft"><b>Properties</b></div>
15095 <div class="floatRight"><input id="button_properties_id46" type="image" src="images/button_minus.gif"
15097 onclick="switchState('properties_id46');"
15098 class="control" /></div>
15101 <div id="properties_id46" style="display:block">
15102 <table class="propertiesTable">
15104 <td class="firstColumn">content:
15107 <td><b>simple</b></td>
15114 <td class="firstColumn">
15115 <div class="floatLeft"><b>Used by</b></div>
15116 <div class="floatRight"><input id="button_usedBy_id46" type="image" src="images/button_minus.gif" value="-"
15117 onclick="switchState('usedBy_id46');"
15118 class="control" /></div>
15121 <div id="usedBy_id46" style="display:block">
15122 <table class="usedByTable">
15124 <td class="firstColumn">Element </td>
15125 <td><b><a href="vamsasDocument1.html#id36" target="mainFrame"
15126 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15127 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:treenode</a></b></td>
15134 <td class="firstColumn">
15135 <div class="floatLeft"><b>Source</b></div>
15136 <div class="floatRight"><input id="button_source_id46" type="image" src="images/button_minus.gif" value="-"
15137 onclick="switchState('source_id46');"
15138 class="control" /></div>
15141 <div id="source_id46" style="display:block">
15142 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15143 class="preWrapContainer">
15145 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"treeId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenElement">></span><span class="tokenIndent">
15146 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
15147 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">reference to one or more trees containing the node being described.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
15148 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
15149 </span><span class="tokenElement"></xs:attribute></span></pre></td>
15156 <td class="firstColumn"><b>Schema location</b></td>
15157 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15162 <td class="rt_lineRight"></td>
15165 <td class="rt_cornerBottomLeft"></td>
15166 <td class="rt_lineBottom"></td>
15167 <td class="rt_cornerBottomRight"></td>
15169 </table><a id="id47"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id36" target="mainFrame"
15170 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15171 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:treenode</a></b>/<b><a href="vamsasDocument1.html#id29" target="mainFrame"
15172 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15173 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@nodespec</span></div>
15176 <td class="rt_cornerTopLeft"></td>
15177 <td class="rt_lineTop"></td>
15178 <td class="rt_cornerTopRight"></td>
15181 <td class="rt_lineLeft"></td>
15182 <td class="rt_content">
15183 <table class="component">
15186 <td class="firstColumn"><b>Namespace</b></td>
15187 <td>No namespace</td>
15190 <td class="firstColumn">
15191 <div class="floatLeft"><b>Annotations</b></div>
15192 <div class="floatRight"><input id="button_annotations_id47" type="image" src="images/button_minus.gif"
15194 onclick="switchState('annotations_id47');"
15195 class="control" /></div>
15198 <div id="annotations_id47" style="display:block">
15199 <div class="annotation">
15200 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15201 class="preWrapContainer">
15203 <td width="100%"><pre><span class="tokenText">String uniquely identifying a particular</span><span class="tokenIndent">
15204 </span><span class="tokenText">node in the referenced tree according to the format of</span><span class="tokenIndent">
15205 </span><span class="tokenText">the tree representation that is referenced.</span></pre></td>
15213 <td class="firstColumn"><b>Type</b></td>
15214 <td><b>xs:string</b></td>
15217 <td class="firstColumn">
15218 <div class="floatLeft"><b>Properties</b></div>
15219 <div class="floatRight"><input id="button_properties_id47" type="image" src="images/button_minus.gif"
15221 onclick="switchState('properties_id47');"
15222 class="control" /></div>
15225 <div id="properties_id47" style="display:block">
15226 <table class="propertiesTable">
15228 <td class="firstColumn">content:
15231 <td><b>simple</b></td>
15238 <td class="firstColumn">
15239 <div class="floatLeft"><b>Used by</b></div>
15240 <div class="floatRight"><input id="button_usedBy_id47" type="image" src="images/button_minus.gif" value="-"
15241 onclick="switchState('usedBy_id47');"
15242 class="control" /></div>
15245 <div id="usedBy_id47" style="display:block">
15246 <table class="usedByTable">
15248 <td class="firstColumn">Element </td>
15249 <td><b><a href="vamsasDocument1.html#id36" target="mainFrame"
15250 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15251 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree/vamsas:treenode</a></b></td>
15258 <td class="firstColumn">
15259 <div class="floatLeft"><b>Source</b></div>
15260 <div class="floatRight"><input id="button_source_id47" type="image" src="images/button_minus.gif" value="-"
15261 onclick="switchState('source_id47');"
15262 class="control" /></div>
15265 <div id="source_id47" style="display:block">
15266 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15267 class="preWrapContainer">
15269 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"nodespec"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenElement">></span><span class="tokenIndent">
15270 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
15271 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">String uniquely identifying a particular node in the referenced tree according to the format of the tree representation that is referenced.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
15272 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
15273 </span><span class="tokenElement"></xs:attribute></span></pre></td>
15280 <td class="firstColumn"><b>Schema location</b></td>
15281 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15286 <td class="rt_lineRight"></td>
15289 <td class="rt_cornerBottomLeft"></td>
15290 <td class="rt_lineBottom"></td>
15291 <td class="rt_cornerBottomRight"></td>
15293 </table><a id="id48"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id29" target="mainFrame"
15294 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15295 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@id</span></div>
15298 <td class="rt_cornerTopLeft"></td>
15299 <td class="rt_lineTop"></td>
15300 <td class="rt_cornerTopRight"></td>
15303 <td class="rt_lineLeft"></td>
15304 <td class="rt_content">
15305 <table class="component">
15308 <td class="firstColumn"><b>Namespace</b></td>
15309 <td>No namespace</td>
15312 <td class="firstColumn">
15313 <div class="floatLeft"><b>Annotations</b></div>
15314 <div class="floatRight"><input id="button_annotations_id48" type="image" src="images/button_minus.gif"
15316 onclick="switchState('annotations_id48');"
15317 class="control" /></div>
15320 <div id="annotations_id48" style="display:block">
15321 <div class="annotation">
15322 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15323 class="preWrapContainer">
15325 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
15333 <td class="firstColumn"><b>Type</b></td>
15334 <td><b>xs:ID</b></td>
15337 <td class="firstColumn">
15338 <div class="floatLeft"><b>Properties</b></div>
15339 <div class="floatRight"><input id="button_properties_id48" type="image" src="images/button_minus.gif"
15341 onclick="switchState('properties_id48');"
15342 class="control" /></div>
15345 <div id="properties_id48" style="display:block">
15346 <table class="propertiesTable">
15348 <td class="firstColumn">use:
15351 <td><b>optional</b></td>
15358 <td class="firstColumn">
15359 <div class="floatLeft"><b>Used by</b></div>
15360 <div class="floatRight"><input id="button_usedBy_id48" type="image" src="images/button_minus.gif" value="-"
15361 onclick="switchState('usedBy_id48');"
15362 class="control" /></div>
15365 <div id="usedBy_id48" style="display:block">
15366 <table class="usedByTable">
15368 <td class="firstColumn">Element </td>
15369 <td><b><a href="vamsasDocument1.html#id29" target="mainFrame"
15370 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15371 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b></td>
15378 <td class="firstColumn">
15379 <div class="floatLeft"><b>Source</b></div>
15380 <div class="floatRight"><input id="button_source_id48" type="image" src="images/button_minus.gif" value="-"
15381 onclick="switchState('source_id48');"
15382 class="control" /></div>
15385 <div id="source_id48" style="display:block">
15386 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15387 class="preWrapContainer">
15389 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
15390 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
15391 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
15392 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
15393 </span><span class="tokenElement"></xs:attribute></span></pre></td>
15400 <td class="firstColumn"><b>Schema location</b></td>
15401 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15406 <td class="rt_lineRight"></td>
15409 <td class="rt_cornerBottomLeft"></td>
15410 <td class="rt_lineBottom"></td>
15411 <td class="rt_cornerBottomRight"></td>
15413 </table><a id="id49"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id29" target="mainFrame"
15414 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15415 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b>/@modifiable</span></div>
15418 <td class="rt_cornerTopLeft"></td>
15419 <td class="rt_lineTop"></td>
15420 <td class="rt_cornerTopRight"></td>
15423 <td class="rt_lineLeft"></td>
15424 <td class="rt_content">
15425 <table class="component">
15428 <td class="firstColumn"><b>Namespace</b></td>
15429 <td>No namespace</td>
15432 <td class="firstColumn"><b>Type</b></td>
15433 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
15434 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15435 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
15438 <td class="firstColumn">
15439 <div class="floatLeft"><b>Properties</b></div>
15440 <div class="floatRight"><input id="button_properties_id49" type="image" src="images/button_minus.gif"
15442 onclick="switchState('properties_id49');"
15443 class="control" /></div>
15446 <div id="properties_id49" style="display:block">
15447 <table class="propertiesTable">
15449 <td class="firstColumn">use:
15452 <td><b>optional</b></td>
15459 <td class="firstColumn">
15460 <div class="floatLeft"><b>Used by</b></div>
15461 <div class="floatRight"><input id="button_usedBy_id49" type="image" src="images/button_minus.gif" value="-"
15462 onclick="switchState('usedBy_id49');"
15463 class="control" /></div>
15466 <div id="usedBy_id49" style="display:block">
15467 <table class="usedByTable">
15469 <td class="firstColumn">Element </td>
15470 <td><b><a href="vamsasDocument1.html#id29" target="mainFrame"
15471 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15472 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Tree</a></b></td>
15479 <td class="firstColumn">
15480 <div class="floatLeft"><b>Source</b></div>
15481 <div class="floatRight"><input id="button_source_id49" type="image" src="images/button_minus.gif" value="-"
15482 onclick="switchState('source_id49');"
15483 class="control" /></div>
15486 <div id="source_id49" style="display:block">
15487 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15488 class="preWrapContainer">
15490 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
15497 <td class="firstColumn"><b>Schema location</b></td>
15498 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15503 <td class="rt_lineRight"></td>
15506 <td class="rt_cornerBottomLeft"></td>
15507 <td class="rt_lineBottom"></td>
15508 <td class="rt_cornerBottomRight"></td>
15510 </table><a id="id56"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id52" target="mainFrame"
15511 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15512 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b>/@start</span></div>
15515 <td class="rt_cornerTopLeft"></td>
15516 <td class="rt_lineTop"></td>
15517 <td class="rt_cornerTopRight"></td>
15520 <td class="rt_lineLeft"></td>
15521 <td class="rt_content">
15522 <table class="component">
15525 <td class="firstColumn"><b>Namespace</b></td>
15526 <td>No namespace</td>
15529 <td class="firstColumn"><b>Type</b></td>
15530 <td><b>xs:integer</b></td>
15533 <td class="firstColumn">
15534 <div class="floatLeft"><b>Properties</b></div>
15535 <div class="floatRight"><input id="button_properties_id56" type="image" src="images/button_minus.gif"
15537 onclick="switchState('properties_id56');"
15538 class="control" /></div>
15541 <div id="properties_id56" style="display:block">
15542 <table class="propertiesTable">
15544 <td class="firstColumn">use:
15547 <td><b>required</b></td>
15554 <td class="firstColumn">
15555 <div class="floatLeft"><b>Used by</b></div>
15556 <div class="floatRight"><input id="button_usedBy_id56" type="image" src="images/button_minus.gif" value="-"
15557 onclick="switchState('usedBy_id56');"
15558 class="control" /></div>
15561 <div id="usedBy_id56" style="display:block">
15562 <table class="usedByTable">
15564 <td class="firstColumn">Complex Type </td>
15565 <td><b><a href="vamsasDocument1.html#id52" target="mainFrame"
15566 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15567 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b></td>
15574 <td class="firstColumn">
15575 <div class="floatLeft"><b>Source</b></div>
15576 <div class="floatRight"><input id="button_source_id56" type="image" src="images/button_minus.gif" value="-"
15577 onclick="switchState('source_id56');"
15578 class="control" /></div>
15581 <div id="source_id56" style="display:block">
15582 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15583 class="preWrapContainer">
15585 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"start"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:integer"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
15592 <td class="firstColumn"><b>Schema location</b></td>
15593 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15598 <td class="rt_lineRight"></td>
15601 <td class="rt_cornerBottomLeft"></td>
15602 <td class="rt_lineBottom"></td>
15603 <td class="rt_cornerBottomRight"></td>
15605 </table><a id="id57"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id52" target="mainFrame"
15606 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15607 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b>/@end</span></div>
15610 <td class="rt_cornerTopLeft"></td>
15611 <td class="rt_lineTop"></td>
15612 <td class="rt_cornerTopRight"></td>
15615 <td class="rt_lineLeft"></td>
15616 <td class="rt_content">
15617 <table class="component">
15620 <td class="firstColumn"><b>Namespace</b></td>
15621 <td>No namespace</td>
15624 <td class="firstColumn"><b>Type</b></td>
15625 <td><b>xs:integer</b></td>
15628 <td class="firstColumn">
15629 <div class="floatLeft"><b>Properties</b></div>
15630 <div class="floatRight"><input id="button_properties_id57" type="image" src="images/button_minus.gif"
15632 onclick="switchState('properties_id57');"
15633 class="control" /></div>
15636 <div id="properties_id57" style="display:block">
15637 <table class="propertiesTable">
15639 <td class="firstColumn">use:
15642 <td><b>required</b></td>
15649 <td class="firstColumn">
15650 <div class="floatLeft"><b>Used by</b></div>
15651 <div class="floatRight"><input id="button_usedBy_id57" type="image" src="images/button_minus.gif" value="-"
15652 onclick="switchState('usedBy_id57');"
15653 class="control" /></div>
15656 <div id="usedBy_id57" style="display:block">
15657 <table class="usedByTable">
15659 <td class="firstColumn">Complex Type </td>
15660 <td><b><a href="vamsasDocument1.html#id52" target="mainFrame"
15661 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15662 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:SequenceType</a></b></td>
15669 <td class="firstColumn">
15670 <div class="floatLeft"><b>Source</b></div>
15671 <div class="floatRight"><input id="button_source_id57" type="image" src="images/button_minus.gif" value="-"
15672 onclick="switchState('source_id57');"
15673 class="control" /></div>
15676 <div id="source_id57" style="display:block">
15677 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15678 class="preWrapContainer">
15680 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"end"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:integer"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
15687 <td class="firstColumn"><b>Schema location</b></td>
15688 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15693 <td class="rt_lineRight"></td>
15696 <td class="rt_cornerBottomLeft"></td>
15697 <td class="rt_lineBottom"></td>
15698 <td class="rt_cornerBottomRight"></td>
15700 </table><a id="id63"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id62" target="mainFrame"
15701 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15702 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b>/@unit</span></div>
15705 <td class="rt_cornerTopLeft"></td>
15706 <td class="rt_lineTop"></td>
15707 <td class="rt_cornerTopRight"></td>
15710 <td class="rt_lineLeft"></td>
15711 <td class="rt_content">
15712 <table class="component">
15715 <td class="firstColumn"><b>Namespace</b></td>
15716 <td>No namespace</td>
15719 <td class="firstColumn">
15720 <div class="floatLeft"><b>Annotations</b></div>
15721 <div class="floatRight"><input id="button_annotations_id63" type="image" src="images/button_minus.gif"
15723 onclick="switchState('annotations_id63');"
15724 class="control" /></div>
15727 <div id="annotations_id63" style="display:block">
15728 <div class="annotation">
15729 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15730 class="preWrapContainer">
15732 <td width="100%"><pre><span class="tokenText">number of dictionary symbol widths involved in each</span><span class="tokenIndent">
15733 </span><span class="tokenText">mapped position on this sequence (for example, 3 for a dna sequence exon</span><span class="tokenIndent">
15734 </span><span class="tokenText">region that is being mapped to a protein sequence). This is optional,</span><span class="tokenIndent">
15735 </span><span class="tokenText">since the unit can be usually be inferred from the dictionary type of</span><span class="tokenIndent">
15736 </span><span class="tokenText">each sequence involved in the mapping.</span></pre></td>
15744 <td class="firstColumn"><b>Type</b></td>
15745 <td><b>xs:positiveInteger</b></td>
15748 <td class="firstColumn">
15749 <div class="floatLeft"><b>Properties</b></div>
15750 <div class="floatRight"><input id="button_properties_id63" type="image" src="images/button_minus.gif"
15752 onclick="switchState('properties_id63');"
15753 class="control" /></div>
15756 <div id="properties_id63" style="display:block">
15757 <table class="propertiesTable">
15759 <td class="firstColumn">use:
15762 <td><b>optional</b></td>
15769 <td class="firstColumn">
15770 <div class="floatLeft"><b>Used by</b></div>
15771 <div class="floatRight"><input id="button_usedBy_id63" type="image" src="images/button_minus.gif" value="-"
15772 onclick="switchState('usedBy_id63');"
15773 class="control" /></div>
15776 <div id="usedBy_id63" style="display:block">
15777 <table class="usedByTable">
15779 <td class="firstColumn">Complex Type </td>
15780 <td><b><a href="vamsasDocument1.html#id62" target="mainFrame"
15781 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15782 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:mapRangeType</a></b></td>
15789 <td class="firstColumn">
15790 <div class="floatLeft"><b>Source</b></div>
15791 <div class="floatRight"><input id="button_source_id63" type="image" src="images/button_minus.gif" value="-"
15792 onclick="switchState('source_id63');"
15793 class="control" /></div>
15796 <div id="source_id63" style="display:block">
15797 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15798 class="preWrapContainer">
15800 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"unit"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:positiveInteger"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
15801 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
15802 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">number of dictionary symbol widths involved in each mapped position on this sequence (for example, 3 for a dna sequence exon region that is being mapped to a protein sequence). This is optional, since the unit can be usually be inferred from the dictionary type of each sequence involved in the mapping.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
15803 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
15804 </span><span class="tokenElement"></xs:attribute></span></pre></td>
15811 <td class="firstColumn"><b>Schema location</b></td>
15812 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15817 <td class="rt_lineRight"></td>
15820 <td class="rt_cornerBottomLeft"></td>
15821 <td class="rt_lineBottom"></td>
15822 <td class="rt_cornerBottomRight"></td>
15824 </table><a id="id65"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id59" target="mainFrame"
15825 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15826 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:map</a></b>/<b><a href="vamsasDocument1.html#id58" target="mainFrame"
15827 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15828 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>/<b><a href="vamsasDocument1.html#id51" target="mainFrame"
15829 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15830 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
15831 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15832 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
15835 <td class="rt_cornerTopLeft"></td>
15836 <td class="rt_lineTop"></td>
15837 <td class="rt_cornerTopRight"></td>
15840 <td class="rt_lineLeft"></td>
15841 <td class="rt_content">
15842 <table class="component">
15845 <td class="firstColumn"><b>Namespace</b></td>
15846 <td>No namespace</td>
15849 <td class="firstColumn"><b>Type</b></td>
15850 <td><b>xs:ID</b></td>
15853 <td class="firstColumn">
15854 <div class="floatLeft"><b>Properties</b></div>
15855 <div class="floatRight"><input id="button_properties_id65" type="image" src="images/button_minus.gif"
15857 onclick="switchState('properties_id65');"
15858 class="control" /></div>
15861 <div id="properties_id65" style="display:block">
15862 <table class="propertiesTable">
15864 <td class="firstColumn">content:
15867 <td><b>simple</b></td>
15874 <td class="firstColumn">
15875 <div class="floatLeft"><b>Used by</b></div>
15876 <div class="floatRight"><input id="button_usedBy_id65" type="image" src="images/button_minus.gif" value="-"
15877 onclick="switchState('usedBy_id65');"
15878 class="control" /></div>
15881 <div id="usedBy_id65" style="display:block">
15882 <table class="usedByTable">
15884 <td class="firstColumn">Element </td>
15885 <td><b><a href="vamsasDocument1.html#id59" target="mainFrame"
15886 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15887 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef/vamsas:map</a></b></td>
15894 <td class="firstColumn">
15895 <div class="floatLeft"><b>Source</b></div>
15896 <div class="floatRight"><input id="button_source_id65" type="image" src="images/button_minus.gif" value="-"
15897 onclick="switchState('source_id65');"
15898 class="control" /></div>
15901 <div id="source_id65" style="display:block">
15902 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15903 class="preWrapContainer">
15905 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenElement">/></span></pre></td>
15912 <td class="firstColumn"><b>Schema location</b></td>
15913 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
15918 <td class="rt_lineRight"></td>
15921 <td class="rt_cornerBottomLeft"></td>
15922 <td class="rt_lineBottom"></td>
15923 <td class="rt_cornerBottomRight"></td>
15925 </table><a id="id67"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id66" target="mainFrame"
15926 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
15927 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b>/@href</span></div>
15930 <td class="rt_cornerTopLeft"></td>
15931 <td class="rt_lineTop"></td>
15932 <td class="rt_cornerTopRight"></td>
15935 <td class="rt_lineLeft"></td>
15936 <td class="rt_content">
15937 <table class="component">
15940 <td class="firstColumn"><b>Namespace</b></td>
15941 <td>No namespace</td>
15944 <td class="firstColumn">
15945 <div class="floatLeft"><b>Annotations</b></div>
15946 <div class="floatRight"><input id="button_annotations_id67" type="image" src="images/button_minus.gif"
15948 onclick="switchState('annotations_id67');"
15949 class="control" /></div>
15952 <div id="annotations_id67" style="display:block">
15953 <div class="annotation">
15954 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
15955 class="preWrapContainer">
15957 <td width="100%"><pre><span class="tokenText">The URI</span></pre></td>
15965 <td class="firstColumn"><b>Type</b></td>
15966 <td><b>xs:anyURI</b></td>
15969 <td class="firstColumn">
15970 <div class="floatLeft"><b>Properties</b></div>
15971 <div class="floatRight"><input id="button_properties_id67" type="image" src="images/button_minus.gif"
15973 onclick="switchState('properties_id67');"
15974 class="control" /></div>
15977 <div id="properties_id67" style="display:block">
15978 <table class="propertiesTable">
15980 <td class="firstColumn">content:
15983 <td><b>simple</b></td>
15990 <td class="firstColumn">
15991 <div class="floatLeft"><b>Used by</b></div>
15992 <div class="floatRight"><input id="button_usedBy_id67" type="image" src="images/button_minus.gif" value="-"
15993 onclick="switchState('usedBy_id67');"
15994 class="control" /></div>
15997 <div id="usedBy_id67" style="display:block">
15998 <table class="usedByTable">
16000 <td class="firstColumn">Element </td>
16001 <td><b><a href="vamsasDocument1.html#id66" target="mainFrame"
16002 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16003 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:link</a></b></td>
16010 <td class="firstColumn">
16011 <div class="floatLeft"><b>Source</b></div>
16012 <div class="floatRight"><input id="button_source_id67" type="image" src="images/button_minus.gif" value="-"
16013 onclick="switchState('source_id67');"
16014 class="control" /></div>
16017 <div id="source_id67" style="display:block">
16018 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16019 class="preWrapContainer">
16021 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"href"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:anyURI"</span><span class="tokenElement">></span><span class="tokenIndent">
16022 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16023 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">The URI</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16024 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16025 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16032 <td class="firstColumn"><b>Schema location</b></td>
16033 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16038 <td class="rt_lineRight"></td>
16041 <td class="rt_cornerBottomLeft"></td>
16042 <td class="rt_lineBottom"></td>
16043 <td class="rt_cornerBottomRight"></td>
16045 </table><a id="id68"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16046 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16047 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>/<b><a href="vamsasDocument1.html#id51" target="mainFrame"
16048 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16049 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16050 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16051 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@source</span></div>
16054 <td class="rt_cornerTopLeft"></td>
16055 <td class="rt_lineTop"></td>
16056 <td class="rt_cornerTopRight"></td>
16059 <td class="rt_lineLeft"></td>
16060 <td class="rt_content">
16061 <table class="component">
16064 <td class="firstColumn"><b>Namespace</b></td>
16065 <td>No namespace</td>
16068 <td class="firstColumn">
16069 <div class="floatLeft"><b>Annotations</b></div>
16070 <div class="floatRight"><input id="button_annotations_id68" type="image" src="images/button_minus.gif"
16072 onclick="switchState('annotations_id68');"
16073 class="control" /></div>
16076 <div id="annotations_id68" style="display:block">
16077 <div class="annotation">
16078 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16079 class="preWrapContainer">
16081 <td width="100%"><pre><span class="tokenText">TODO Database Naming</span><span class="tokenIndent">
16082 </span><span class="tokenText">Convention: either start using LSID (so</span><span class="tokenIndent">
16083 </span><span class="tokenText">change type to URI) or leave this as an</span><span class="tokenIndent">
16084 </span><span class="tokenText">uncontrolled/unspecified string ID</span></pre></td>
16092 <td class="firstColumn"><b>Type</b></td>
16093 <td><b>xs:string</b></td>
16096 <td class="firstColumn">
16097 <div class="floatLeft"><b>Properties</b></div>
16098 <div class="floatRight"><input id="button_properties_id68" type="image" src="images/button_minus.gif"
16100 onclick="switchState('properties_id68');"
16101 class="control" /></div>
16104 <div id="properties_id68" style="display:block">
16105 <table class="propertiesTable">
16107 <td class="firstColumn">use:
16110 <td><b>required</b></td>
16117 <td class="firstColumn">
16118 <div class="floatLeft"><b>Used by</b></div>
16119 <div class="floatRight"><input id="button_usedBy_id68" type="image" src="images/button_minus.gif" value="-"
16120 onclick="switchState('usedBy_id68');"
16121 class="control" /></div>
16124 <div id="usedBy_id68" style="display:block">
16125 <table class="usedByTable">
16127 <td class="firstColumn">Element </td>
16128 <td><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16129 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16130 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef</a></b></td>
16137 <td class="firstColumn">
16138 <div class="floatLeft"><b>Source</b></div>
16139 <div class="floatRight"><input id="button_source_id68" type="image" src="images/button_minus.gif" value="-"
16140 onclick="switchState('source_id68');"
16141 class="control" /></div>
16144 <div id="source_id68" style="display:block">
16145 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16146 class="preWrapContainer">
16148 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"source"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
16149 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16150 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO Database Naming Convention: either start using LSID (so change type to URI) or leave this as an uncontrolled/unspecified string ID</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16151 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16152 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16159 <td class="firstColumn"><b>Schema location</b></td>
16160 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16165 <td class="rt_lineRight"></td>
16168 <td class="rt_cornerBottomLeft"></td>
16169 <td class="rt_lineBottom"></td>
16170 <td class="rt_cornerBottomRight"></td>
16172 </table><a id="id69"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16173 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16174 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>/<b><a href="vamsasDocument1.html#id51" target="mainFrame"
16175 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16176 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16177 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16178 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@version</span></div>
16181 <td class="rt_cornerTopLeft"></td>
16182 <td class="rt_lineTop"></td>
16183 <td class="rt_cornerTopRight"></td>
16186 <td class="rt_lineLeft"></td>
16187 <td class="rt_content">
16188 <table class="component">
16191 <td class="firstColumn"><b>Namespace</b></td>
16192 <td>No namespace</td>
16195 <td class="firstColumn">
16196 <div class="floatLeft"><b>Annotations</b></div>
16197 <div class="floatRight"><input id="button_annotations_id69" type="image" src="images/button_minus.gif"
16199 onclick="switchState('annotations_id69');"
16200 class="control" /></div>
16203 <div id="annotations_id69" style="display:block">
16204 <div class="annotation">
16205 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16206 class="preWrapContainer">
16208 <td width="100%"><pre><span class="tokenText">Version must be specified -</span></pre></td>
16216 <td class="firstColumn"><b>Type</b></td>
16217 <td><b>xs:string</b></td>
16220 <td class="firstColumn">
16221 <div class="floatLeft"><b>Properties</b></div>
16222 <div class="floatRight"><input id="button_properties_id69" type="image" src="images/button_minus.gif"
16224 onclick="switchState('properties_id69');"
16225 class="control" /></div>
16228 <div id="properties_id69" style="display:block">
16229 <table class="propertiesTable">
16231 <td class="firstColumn">use:
16234 <td><b>required</b></td>
16241 <td class="firstColumn">
16242 <div class="floatLeft"><b>Used by</b></div>
16243 <div class="floatRight"><input id="button_usedBy_id69" type="image" src="images/button_minus.gif" value="-"
16244 onclick="switchState('usedBy_id69');"
16245 class="control" /></div>
16248 <div id="usedBy_id69" style="display:block">
16249 <table class="usedByTable">
16251 <td class="firstColumn">Element </td>
16252 <td><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16253 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16254 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef</a></b></td>
16261 <td class="firstColumn">
16262 <div class="floatLeft"><b>Source</b></div>
16263 <div class="floatRight"><input id="button_source_id69" type="image" src="images/button_minus.gif" value="-"
16264 onclick="switchState('source_id69');"
16265 class="control" /></div>
16268 <div id="source_id69" style="display:block">
16269 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16270 class="preWrapContainer">
16272 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"version"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
16273 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16274 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Version must be specified -</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16275 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16276 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16283 <td class="firstColumn"><b>Schema location</b></td>
16284 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16289 <td class="rt_lineRight"></td>
16292 <td class="rt_cornerBottomLeft"></td>
16293 <td class="rt_lineBottom"></td>
16294 <td class="rt_cornerBottomRight"></td>
16296 </table><a id="id70"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16297 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16298 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>/<b><a href="vamsasDocument1.html#id51" target="mainFrame"
16299 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16300 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16301 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16302 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@accessionId</span></div>
16305 <td class="rt_cornerTopLeft"></td>
16306 <td class="rt_lineTop"></td>
16307 <td class="rt_cornerTopRight"></td>
16310 <td class="rt_lineLeft"></td>
16311 <td class="rt_content">
16312 <table class="component">
16315 <td class="firstColumn"><b>Namespace</b></td>
16316 <td>No namespace</td>
16319 <td class="firstColumn">
16320 <div class="floatLeft"><b>Annotations</b></div>
16321 <div class="floatRight"><input id="button_annotations_id70" type="image" src="images/button_minus.gif"
16323 onclick="switchState('annotations_id70');"
16324 class="control" /></div>
16327 <div id="annotations_id70" style="display:block">
16328 <div class="annotation">
16329 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16330 class="preWrapContainer">
16332 <td width="100%"><pre><span class="tokenText">TODO: make some specification</span><span class="tokenIndent">
16333 </span><span class="tokenText">of the database field from which this</span><span class="tokenIndent">
16334 </span><span class="tokenText">accessionId is taken from - should that be a</span><span class="tokenIndent">
16335 </span><span class="tokenText">special property of the dbRef object ?</span></pre></td>
16343 <td class="firstColumn"><b>Type</b></td>
16344 <td><b>xs:string</b></td>
16347 <td class="firstColumn">
16348 <div class="floatLeft"><b>Properties</b></div>
16349 <div class="floatRight"><input id="button_properties_id70" type="image" src="images/button_minus.gif"
16351 onclick="switchState('properties_id70');"
16352 class="control" /></div>
16355 <div id="properties_id70" style="display:block">
16356 <table class="propertiesTable">
16358 <td class="firstColumn">use:
16361 <td><b>required</b></td>
16368 <td class="firstColumn">
16369 <div class="floatLeft"><b>Used by</b></div>
16370 <div class="floatRight"><input id="button_usedBy_id70" type="image" src="images/button_minus.gif" value="-"
16371 onclick="switchState('usedBy_id70');"
16372 class="control" /></div>
16375 <div id="usedBy_id70" style="display:block">
16376 <table class="usedByTable">
16378 <td class="firstColumn">Element </td>
16379 <td><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16380 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16381 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef</a></b></td>
16388 <td class="firstColumn">
16389 <div class="floatLeft"><b>Source</b></div>
16390 <div class="floatRight"><input id="button_source_id70" type="image" src="images/button_minus.gif" value="-"
16391 onclick="switchState('source_id70');"
16392 class="control" /></div>
16395 <div id="source_id70" style="display:block">
16396 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16397 class="preWrapContainer">
16399 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"accessionId"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
16400 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16401 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: make some specification of the database field from which this accessionId is taken from - should that be a special property of the dbRef object ?</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16402 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16403 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16410 <td class="firstColumn"><b>Schema location</b></td>
16411 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16416 <td class="rt_lineRight"></td>
16419 <td class="rt_cornerBottomLeft"></td>
16420 <td class="rt_lineBottom"></td>
16421 <td class="rt_cornerBottomRight"></td>
16423 </table><a id="id71"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16424 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16425 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:dbRef</a></b>/<b><a href="vamsasDocument1.html#id51" target="mainFrame"
16426 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16427 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16428 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16429 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
16432 <td class="rt_cornerTopLeft"></td>
16433 <td class="rt_lineTop"></td>
16434 <td class="rt_cornerTopRight"></td>
16437 <td class="rt_lineLeft"></td>
16438 <td class="rt_content">
16439 <table class="component">
16442 <td class="firstColumn"><b>Namespace</b></td>
16443 <td>No namespace</td>
16446 <td class="firstColumn">
16447 <div class="floatLeft"><b>Annotations</b></div>
16448 <div class="floatRight"><input id="button_annotations_id71" type="image" src="images/button_minus.gif"
16450 onclick="switchState('annotations_id71');"
16451 class="control" /></div>
16454 <div id="annotations_id71" style="display:block">
16455 <div class="annotation">
16456 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16457 class="preWrapContainer">
16459 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object</span><span class="tokenIndent">
16460 </span><span class="tokenText">referencing</span></pre></td>
16468 <td class="firstColumn"><b>Type</b></td>
16469 <td><b>xs:ID</b></td>
16472 <td class="firstColumn">
16473 <div class="floatLeft"><b>Properties</b></div>
16474 <div class="floatRight"><input id="button_properties_id71" type="image" src="images/button_minus.gif"
16476 onclick="switchState('properties_id71');"
16477 class="control" /></div>
16480 <div id="properties_id71" style="display:block">
16481 <table class="propertiesTable">
16483 <td class="firstColumn">use:
16486 <td><b>optional</b></td>
16493 <td class="firstColumn">
16494 <div class="floatLeft"><b>Used by</b></div>
16495 <div class="floatRight"><input id="button_usedBy_id71" type="image" src="images/button_minus.gif" value="-"
16496 onclick="switchState('usedBy_id71');"
16497 class="control" /></div>
16500 <div id="usedBy_id71" style="display:block">
16501 <table class="usedByTable">
16503 <td class="firstColumn">Element </td>
16504 <td><b><a href="vamsasDocument1.html#id58" target="mainFrame"
16505 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16506 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence/vamsas:dbRef</a></b></td>
16513 <td class="firstColumn">
16514 <div class="floatLeft"><b>Source</b></div>
16515 <div class="floatRight"><input id="button_source_id71" type="image" src="images/button_minus.gif" value="-"
16516 onclick="switchState('source_id71');"
16517 class="control" /></div>
16520 <div id="source_id71" style="display:block">
16521 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16522 class="preWrapContainer">
16524 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
16525 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16526 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16527 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16528 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16535 <td class="firstColumn"><b>Schema location</b></td>
16536 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16541 <td class="rt_lineRight"></td>
16544 <td class="rt_cornerBottomLeft"></td>
16545 <td class="rt_lineBottom"></td>
16546 <td class="rt_cornerBottomRight"></td>
16548 </table><a id="id73"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id51" target="mainFrame"
16549 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16550 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16551 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16552 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
16555 <td class="rt_cornerTopLeft"></td>
16556 <td class="rt_lineTop"></td>
16557 <td class="rt_cornerTopRight"></td>
16560 <td class="rt_lineLeft"></td>
16561 <td class="rt_content">
16562 <table class="component">
16565 <td class="firstColumn"><b>Namespace</b></td>
16566 <td>No namespace</td>
16569 <td class="firstColumn">
16570 <div class="floatLeft"><b>Annotations</b></div>
16571 <div class="floatRight"><input id="button_annotations_id73" type="image" src="images/button_minus.gif"
16573 onclick="switchState('annotations_id73');"
16574 class="control" /></div>
16577 <div id="annotations_id73" style="display:block">
16578 <div class="annotation">
16579 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16580 class="preWrapContainer">
16582 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
16590 <td class="firstColumn"><b>Type</b></td>
16591 <td><b>xs:ID</b></td>
16594 <td class="firstColumn">
16595 <div class="floatLeft"><b>Properties</b></div>
16596 <div class="floatRight"><input id="button_properties_id73" type="image" src="images/button_minus.gif"
16598 onclick="switchState('properties_id73');"
16599 class="control" /></div>
16602 <div id="properties_id73" style="display:block">
16603 <table class="propertiesTable">
16605 <td class="firstColumn">use:
16608 <td><b>optional</b></td>
16615 <td class="firstColumn">
16616 <div class="floatLeft"><b>Used by</b></div>
16617 <div class="floatRight"><input id="button_usedBy_id73" type="image" src="images/button_minus.gif" value="-"
16618 onclick="switchState('usedBy_id73');"
16619 class="control" /></div>
16622 <div id="usedBy_id73" style="display:block">
16623 <table class="usedByTable">
16625 <td class="firstColumn">Element </td>
16626 <td><b><a href="vamsasDocument1.html#id51" target="mainFrame"
16627 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16628 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence</a></b></td>
16635 <td class="firstColumn">
16636 <div class="floatLeft"><b>Source</b></div>
16637 <div class="floatRight"><input id="button_source_id73" type="image" src="images/button_minus.gif" value="-"
16638 onclick="switchState('source_id73');"
16639 class="control" /></div>
16642 <div id="source_id73" style="display:block">
16643 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16644 class="preWrapContainer">
16646 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
16647 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16648 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16649 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16650 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16657 <td class="firstColumn"><b>Schema location</b></td>
16658 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16663 <td class="rt_lineRight"></td>
16666 <td class="rt_cornerBottomLeft"></td>
16667 <td class="rt_lineBottom"></td>
16668 <td class="rt_cornerBottomRight"></td>
16670 </table><a id="id74"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id51" target="mainFrame"
16671 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16672 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Sequence</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16673 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16674 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@dictionary</span></div>
16677 <td class="rt_cornerTopLeft"></td>
16678 <td class="rt_lineTop"></td>
16679 <td class="rt_cornerTopRight"></td>
16682 <td class="rt_lineLeft"></td>
16683 <td class="rt_content">
16684 <table class="component">
16687 <td class="firstColumn"><b>Namespace</b></td>
16688 <td>No namespace</td>
16691 <td class="firstColumn">
16692 <div class="floatLeft"><b>Annotations</b></div>
16693 <div class="floatRight"><input id="button_annotations_id74" type="image" src="images/button_minus.gif"
16695 onclick="switchState('annotations_id74');"
16696 class="control" /></div>
16699 <div id="annotations_id74" style="display:block">
16700 <div class="annotation">
16701 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16702 class="preWrapContainer">
16704 <td width="100%"><pre><span class="tokenText">symbol class for sequence</span></pre></td>
16712 <td class="firstColumn"><b>Type</b></td>
16713 <td><b>xs:string</b></td>
16716 <td class="firstColumn">
16717 <div class="floatLeft"><b>Properties</b></div>
16718 <div class="floatRight"><input id="button_properties_id74" type="image" src="images/button_minus.gif"
16720 onclick="switchState('properties_id74');"
16721 class="control" /></div>
16724 <div id="properties_id74" style="display:block">
16725 <table class="propertiesTable">
16727 <td class="firstColumn">use:
16730 <td><b>required</b></td>
16737 <td class="firstColumn">
16738 <div class="floatLeft"><b>Used by</b></div>
16739 <div class="floatRight"><input id="button_usedBy_id74" type="image" src="images/button_minus.gif" value="-"
16740 onclick="switchState('usedBy_id74');"
16741 class="control" /></div>
16744 <div id="usedBy_id74" style="display:block">
16745 <table class="usedByTable">
16747 <td class="firstColumn">Element </td>
16748 <td><b><a href="vamsasDocument1.html#id51" target="mainFrame"
16749 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16750 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Sequence</a></b></td>
16757 <td class="firstColumn">
16758 <div class="floatLeft"><b>Source</b></div>
16759 <div class="floatRight"><input id="button_source_id74" type="image" src="images/button_minus.gif" value="-"
16760 onclick="switchState('source_id74');"
16761 class="control" /></div>
16764 <div id="source_id74" style="display:block">
16765 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16766 class="preWrapContainer">
16768 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dictionary"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
16769 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16770 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">symbol class for sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16771 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16772 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16779 <td class="firstColumn"><b>Schema location</b></td>
16780 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16785 <td class="rt_lineRight"></td>
16788 <td class="rt_cornerBottomLeft"></td>
16789 <td class="rt_lineBottom"></td>
16790 <td class="rt_cornerBottomRight"></td>
16792 </table><a id="id76"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id75" target="mainFrame"
16793 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16794 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequenceMapping</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16795 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16796 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@loc</span></div>
16799 <td class="rt_cornerTopLeft"></td>
16800 <td class="rt_lineTop"></td>
16801 <td class="rt_cornerTopRight"></td>
16804 <td class="rt_lineLeft"></td>
16805 <td class="rt_content">
16806 <table class="component">
16809 <td class="firstColumn"><b>Namespace</b></td>
16810 <td>No namespace</td>
16813 <td class="firstColumn">
16814 <div class="floatLeft"><b>Annotations</b></div>
16815 <div class="floatRight"><input id="button_annotations_id76" type="image" src="images/button_minus.gif"
16817 onclick="switchState('annotations_id76');"
16818 class="control" /></div>
16821 <div id="annotations_id76" style="display:block">
16822 <div class="annotation">
16823 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16824 class="preWrapContainer">
16826 <td width="100%"><pre><span class="tokenText">Object on which the local</span><span class="tokenIndent">
16827 </span><span class="tokenText">range is defined.</span></pre></td>
16835 <td class="firstColumn"><b>Type</b></td>
16836 <td><b>xs:IDREF</b></td>
16839 <td class="firstColumn">
16840 <div class="floatLeft"><b>Properties</b></div>
16841 <div class="floatRight"><input id="button_properties_id76" type="image" src="images/button_minus.gif"
16843 onclick="switchState('properties_id76');"
16844 class="control" /></div>
16847 <div id="properties_id76" style="display:block">
16848 <table class="propertiesTable">
16850 <td class="firstColumn">use:
16853 <td><b>required</b></td>
16860 <td class="firstColumn">
16861 <div class="floatLeft"><b>Used by</b></div>
16862 <div class="floatRight"><input id="button_usedBy_id76" type="image" src="images/button_minus.gif" value="-"
16863 onclick="switchState('usedBy_id76');"
16864 class="control" /></div>
16867 <div id="usedBy_id76" style="display:block">
16868 <table class="usedByTable">
16870 <td class="firstColumn">Element </td>
16871 <td><b><a href="vamsasDocument1.html#id75" target="mainFrame"
16872 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16873 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:sequenceMapping</a></b></td>
16880 <td class="firstColumn">
16881 <div class="floatLeft"><b>Source</b></div>
16882 <div class="floatRight"><input id="button_source_id76" type="image" src="images/button_minus.gif" value="-"
16883 onclick="switchState('source_id76');"
16884 class="control" /></div>
16887 <div id="source_id76" style="display:block">
16888 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16889 class="preWrapContainer">
16891 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"loc"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
16892 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
16893 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object on which the local range is defined.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
16894 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
16895 </span><span class="tokenElement"></xs:attribute></span></pre></td>
16902 <td class="firstColumn"><b>Schema location</b></td>
16903 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
16908 <td class="rt_lineRight"></td>
16911 <td class="rt_cornerBottomLeft"></td>
16912 <td class="rt_lineBottom"></td>
16913 <td class="rt_cornerBottomRight"></td>
16915 </table><a id="id77"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id75" target="mainFrame"
16916 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16917 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequenceMapping</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
16918 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16919 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@map</span></div>
16922 <td class="rt_cornerTopLeft"></td>
16923 <td class="rt_lineTop"></td>
16924 <td class="rt_cornerTopRight"></td>
16927 <td class="rt_lineLeft"></td>
16928 <td class="rt_content">
16929 <table class="component">
16932 <td class="firstColumn"><b>Namespace</b></td>
16933 <td>No namespace</td>
16936 <td class="firstColumn">
16937 <div class="floatLeft"><b>Annotations</b></div>
16938 <div class="floatRight"><input id="button_annotations_id77" type="image" src="images/button_minus.gif"
16940 onclick="switchState('annotations_id77');"
16941 class="control" /></div>
16944 <div id="annotations_id77" style="display:block">
16945 <div class="annotation">
16946 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
16947 class="preWrapContainer">
16949 <td width="100%"><pre><span class="tokenText">Object on which the mapped</span><span class="tokenIndent">
16950 </span><span class="tokenText">range is defined.</span></pre></td>
16958 <td class="firstColumn"><b>Type</b></td>
16959 <td><b>xs:IDREF</b></td>
16962 <td class="firstColumn">
16963 <div class="floatLeft"><b>Properties</b></div>
16964 <div class="floatRight"><input id="button_properties_id77" type="image" src="images/button_minus.gif"
16966 onclick="switchState('properties_id77');"
16967 class="control" /></div>
16970 <div id="properties_id77" style="display:block">
16971 <table class="propertiesTable">
16973 <td class="firstColumn">use:
16976 <td><b>required</b></td>
16983 <td class="firstColumn">
16984 <div class="floatLeft"><b>Used by</b></div>
16985 <div class="floatRight"><input id="button_usedBy_id77" type="image" src="images/button_minus.gif" value="-"
16986 onclick="switchState('usedBy_id77');"
16987 class="control" /></div>
16990 <div id="usedBy_id77" style="display:block">
16991 <table class="usedByTable">
16993 <td class="firstColumn">Element </td>
16994 <td><b><a href="vamsasDocument1.html#id75" target="mainFrame"
16995 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
16996 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:sequenceMapping</a></b></td>
17003 <td class="firstColumn">
17004 <div class="floatLeft"><b>Source</b></div>
17005 <div class="floatRight"><input id="button_source_id77" type="image" src="images/button_minus.gif" value="-"
17006 onclick="switchState('source_id77');"
17007 class="control" /></div>
17010 <div id="source_id77" style="display:block">
17011 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17012 class="preWrapContainer">
17014 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"map"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
17015 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
17016 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object on which the mapped range is defined.</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17017 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
17018 </span><span class="tokenElement"></xs:attribute></span></pre></td>
17025 <td class="firstColumn"><b>Schema location</b></td>
17026 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17031 <td class="rt_lineRight"></td>
17034 <td class="rt_cornerBottomLeft"></td>
17035 <td class="rt_lineBottom"></td>
17036 <td class="rt_cornerBottomRight"></td>
17038 </table><a id="id78"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id75" target="mainFrame"
17039 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17040 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:sequenceMapping</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
17041 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17042 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
17045 <td class="rt_cornerTopLeft"></td>
17046 <td class="rt_lineTop"></td>
17047 <td class="rt_cornerTopRight"></td>
17050 <td class="rt_lineLeft"></td>
17051 <td class="rt_content">
17052 <table class="component">
17055 <td class="firstColumn"><b>Namespace</b></td>
17056 <td>No namespace</td>
17059 <td class="firstColumn"><b>Type</b></td>
17060 <td><b>xs:ID</b></td>
17063 <td class="firstColumn">
17064 <div class="floatLeft"><b>Properties</b></div>
17065 <div class="floatRight"><input id="button_properties_id78" type="image" src="images/button_minus.gif"
17067 onclick="switchState('properties_id78');"
17068 class="control" /></div>
17071 <div id="properties_id78" style="display:block">
17072 <table class="propertiesTable">
17074 <td class="firstColumn">use:
17077 <td><b>optional</b></td>
17084 <td class="firstColumn">
17085 <div class="floatLeft"><b>Used by</b></div>
17086 <div class="floatRight"><input id="button_usedBy_id78" type="image" src="images/button_minus.gif" value="-"
17087 onclick="switchState('usedBy_id78');"
17088 class="control" /></div>
17091 <div id="usedBy_id78" style="display:block">
17092 <table class="usedByTable">
17094 <td class="firstColumn">Element </td>
17095 <td><b><a href="vamsasDocument1.html#id75" target="mainFrame"
17096 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17097 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:sequenceMapping</a></b></td>
17104 <td class="firstColumn">
17105 <div class="floatLeft"><b>Source</b></div>
17106 <div class="floatRight"><input id="button_source_id78" type="image" src="images/button_minus.gif" value="-"
17107 onclick="switchState('source_id78');"
17108 class="control" /></div>
17111 <div id="source_id78" style="display:block">
17112 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17113 class="preWrapContainer">
17115 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
17122 <td class="firstColumn"><b>Schema location</b></td>
17123 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17128 <td class="rt_lineRight"></td>
17131 <td class="rt_cornerBottomLeft"></td>
17132 <td class="rt_lineBottom"></td>
17133 <td class="rt_cornerBottomRight"></td>
17135 </table><a id="id87"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id86" target="mainFrame"
17136 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17137 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:glyph</a></b>/<b><a href="vamsasDocument1.html#id84" target="mainFrame"
17138 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17139 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/@dict</span></div>
17142 <td class="rt_cornerTopLeft"></td>
17143 <td class="rt_lineTop"></td>
17144 <td class="rt_cornerTopRight"></td>
17147 <td class="rt_lineLeft"></td>
17148 <td class="rt_content">
17149 <table class="component">
17152 <td class="firstColumn"><b>Namespace</b></td>
17153 <td>No namespace</td>
17156 <td class="firstColumn">
17157 <div class="floatLeft"><b>Annotations</b></div>
17158 <div class="floatRight"><input id="button_annotations_id87" type="image" src="images/button_minus.gif"
17160 onclick="switchState('annotations_id87');"
17161 class="control" /></div>
17164 <div id="annotations_id87" style="display:block">
17165 <div class="annotation">
17166 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17167 class="preWrapContainer">
17169 <td width="100%"><pre><span class="tokenText">specifies the symbol dictionary for this</span><span class="tokenIndent">
17170 </span><span class="tokenText">glyph - eg utf8 (the default), aasecstr_3 or</span><span class="tokenIndent">
17171 </span><span class="tokenText">kd_hydrophobicity - the content is not validated so</span><span class="tokenIndent">
17172 </span><span class="tokenText">applications must ensure they gracefully deal with</span><span class="tokenIndent">
17173 </span><span class="tokenText">invalid entries here</span></pre></td>
17177 <div class="annotation">
17178 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17179 class="preWrapContainer">
17181 <td width="100%"><pre><span class="tokenText">TODO: specify a minimum list of glyph</span><span class="tokenIndent">
17182 </span><span class="tokenText">dictionaries to get us started and provide a way for the</span><span class="tokenIndent">
17183 </span><span class="tokenText">vamsasClient to validate their content if regexes are</span><span class="tokenIndent">
17184 </span><span class="tokenText">specified</span></pre></td>
17192 <td class="firstColumn"><b>Type</b></td>
17193 <td><b>xs:string</b></td>
17196 <td class="firstColumn">
17197 <div class="floatLeft"><b>Properties</b></div>
17198 <div class="floatRight"><input id="button_properties_id87" type="image" src="images/button_minus.gif"
17200 onclick="switchState('properties_id87');"
17201 class="control" /></div>
17204 <div id="properties_id87" style="display:block">
17205 <table class="propertiesTable">
17207 <td class="firstColumn">use:
17210 <td><b>optional</b></td>
17213 <td class="firstColumn">default:
17216 <td><b>utf8</b></td>
17223 <td class="firstColumn">
17224 <div class="floatLeft"><b>Used by</b></div>
17225 <div class="floatRight"><input id="button_usedBy_id87" type="image" src="images/button_minus.gif" value="-"
17226 onclick="switchState('usedBy_id87');"
17227 class="control" /></div>
17230 <div id="usedBy_id87" style="display:block">
17231 <table class="usedByTable">
17233 <td class="firstColumn">Element </td>
17234 <td><b><a href="vamsasDocument1.html#id86" target="mainFrame"
17235 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17236 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement/vamsas:glyph</a></b></td>
17243 <td class="firstColumn">
17244 <div class="floatLeft"><b>Source</b></div>
17245 <div class="floatRight"><input id="button_source_id87" type="image" src="images/button_minus.gif" value="-"
17246 onclick="switchState('source_id87');"
17247 class="control" /></div>
17250 <div id="source_id87" style="display:block">
17251 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17252 class="preWrapContainer">
17254 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"dict"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"utf8"</span><span class="tokenElement">></span><span class="tokenIndent">
17255 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
17256 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">specifies the symbol dictionary for this glyph - eg utf8 (the default), aasecstr_3 or kd_hydrophobicity - the content is not validated so applications must ensure they gracefully deal with invalid entries here</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17257 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: specify a minimum list of glyph dictionaries to get us started and provide a way for the vamsasClient to validate their content if regexes are specified</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17258 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
17259 </span><span class="tokenElement"></xs:attribute></span></pre></td>
17266 <td class="firstColumn"><b>Schema location</b></td>
17267 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17272 <td class="rt_lineRight"></td>
17275 <td class="rt_cornerBottomLeft"></td>
17276 <td class="rt_lineBottom"></td>
17277 <td class="rt_cornerBottomRight"></td>
17279 </table><a id="id89"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id84" target="mainFrame"
17280 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17281 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/@position</span></div>
17284 <td class="rt_cornerTopLeft"></td>
17285 <td class="rt_lineTop"></td>
17286 <td class="rt_cornerTopRight"></td>
17289 <td class="rt_lineLeft"></td>
17290 <td class="rt_content">
17291 <table class="component">
17294 <td class="firstColumn"><b>Namespace</b></td>
17295 <td>No namespace</td>
17298 <td class="firstColumn">
17299 <div class="floatLeft"><b>Annotations</b></div>
17300 <div class="floatRight"><input id="button_annotations_id89" type="image" src="images/button_minus.gif"
17302 onclick="switchState('annotations_id89');"
17303 class="control" /></div>
17306 <div id="annotations_id89" style="display:block">
17307 <div class="annotation">
17308 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17309 class="preWrapContainer">
17311 <td width="100%"><pre><span class="tokenText">position with respect to the coordinate frame defined by a</span><span class="tokenIndent">
17312 </span><span class="tokenText">rangeType specification</span></pre></td>
17320 <td class="firstColumn"><b>Type</b></td>
17321 <td><b>xs:integer</b></td>
17324 <td class="firstColumn">
17325 <div class="floatLeft"><b>Properties</b></div>
17326 <div class="floatRight"><input id="button_properties_id89" type="image" src="images/button_minus.gif"
17328 onclick="switchState('properties_id89');"
17329 class="control" /></div>
17332 <div id="properties_id89" style="display:block">
17333 <table class="propertiesTable">
17335 <td class="firstColumn">use:
17338 <td><b>required</b></td>
17345 <td class="firstColumn">
17346 <div class="floatLeft"><b>Used by</b></div>
17347 <div class="floatRight"><input id="button_usedBy_id89" type="image" src="images/button_minus.gif" value="-"
17348 onclick="switchState('usedBy_id89');"
17349 class="control" /></div>
17352 <div id="usedBy_id89" style="display:block">
17353 <table class="usedByTable">
17355 <td class="firstColumn">Element </td>
17356 <td><b><a href="vamsasDocument1.html#id84" target="mainFrame"
17357 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17358 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b></td>
17365 <td class="firstColumn">
17366 <div class="floatLeft"><b>Source</b></div>
17367 <div class="floatRight"><input id="button_source_id89" type="image" src="images/button_minus.gif" value="-"
17368 onclick="switchState('source_id89');"
17369 class="control" /></div>
17372 <div id="source_id89" style="display:block">
17373 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17374 class="preWrapContainer">
17376 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"position"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:integer"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
17377 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
17378 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">position with respect to the coordinate frame defined by a rangeType specification</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17379 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
17380 </span><span class="tokenElement"></xs:attribute></span></pre></td>
17387 <td class="firstColumn"><b>Schema location</b></td>
17388 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17393 <td class="rt_lineRight"></td>
17396 <td class="rt_cornerBottomLeft"></td>
17397 <td class="rt_lineBottom"></td>
17398 <td class="rt_cornerBottomRight"></td>
17400 </table><a id="id90"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id84" target="mainFrame"
17401 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17402 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/@after</span></div>
17405 <td class="rt_cornerTopLeft"></td>
17406 <td class="rt_lineTop"></td>
17407 <td class="rt_cornerTopRight"></td>
17410 <td class="rt_lineLeft"></td>
17411 <td class="rt_content">
17412 <table class="component">
17415 <td class="firstColumn"><b>Namespace</b></td>
17416 <td>No namespace</td>
17419 <td class="firstColumn">
17420 <div class="floatLeft"><b>Annotations</b></div>
17421 <div class="floatRight"><input id="button_annotations_id90" type="image" src="images/button_minus.gif"
17423 onclick="switchState('annotations_id90');"
17424 class="control" /></div>
17427 <div id="annotations_id90" style="display:block">
17428 <div class="annotation">
17429 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17430 class="preWrapContainer">
17432 <td width="100%"><pre><span class="tokenText">true means the annotation element appears between the</span><span class="tokenIndent">
17433 </span><span class="tokenText">specified position and the next</span></pre></td>
17441 <td class="firstColumn"><b>Type</b></td>
17442 <td><b>xs:boolean</b></td>
17445 <td class="firstColumn">
17446 <div class="floatLeft"><b>Properties</b></div>
17447 <div class="floatRight"><input id="button_properties_id90" type="image" src="images/button_minus.gif"
17449 onclick="switchState('properties_id90');"
17450 class="control" /></div>
17453 <div id="properties_id90" style="display:block">
17454 <table class="propertiesTable">
17456 <td class="firstColumn">use:
17459 <td><b>optional</b></td>
17462 <td class="firstColumn">default:
17465 <td><b>false</b></td>
17472 <td class="firstColumn">
17473 <div class="floatLeft"><b>Used by</b></div>
17474 <div class="floatRight"><input id="button_usedBy_id90" type="image" src="images/button_minus.gif" value="-"
17475 onclick="switchState('usedBy_id90');"
17476 class="control" /></div>
17479 <div id="usedBy_id90" style="display:block">
17480 <table class="usedByTable">
17482 <td class="firstColumn">Element </td>
17483 <td><b><a href="vamsasDocument1.html#id84" target="mainFrame"
17484 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17485 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b></td>
17492 <td class="firstColumn">
17493 <div class="floatLeft"><b>Source</b></div>
17494 <div class="floatRight"><input id="button_source_id90" type="image" src="images/button_minus.gif" value="-"
17495 onclick="switchState('source_id90');"
17496 class="control" /></div>
17499 <div id="source_id90" style="display:block">
17500 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17501 class="preWrapContainer">
17503 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"after"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"false"</span><span class="tokenElement">></span><span class="tokenIndent">
17504 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
17505 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">true means the annotation element appears between the specified position and the next</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17506 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
17507 </span><span class="tokenElement"></xs:attribute></span></pre></td>
17514 <td class="firstColumn"><b>Schema location</b></td>
17515 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17520 <td class="rt_lineRight"></td>
17523 <td class="rt_cornerBottomLeft"></td>
17524 <td class="rt_lineBottom"></td>
17525 <td class="rt_cornerBottomRight"></td>
17527 </table><a id="id91"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id84" target="mainFrame"
17528 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17529 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b>/@id</span></div>
17532 <td class="rt_cornerTopLeft"></td>
17533 <td class="rt_lineTop"></td>
17534 <td class="rt_cornerTopRight"></td>
17537 <td class="rt_lineLeft"></td>
17538 <td class="rt_content">
17539 <table class="component">
17542 <td class="firstColumn"><b>Namespace</b></td>
17543 <td>No namespace</td>
17546 <td class="firstColumn">
17547 <div class="floatLeft"><b>Annotations</b></div>
17548 <div class="floatRight"><input id="button_annotations_id91" type="image" src="images/button_minus.gif"
17550 onclick="switchState('annotations_id91');"
17551 class="control" /></div>
17554 <div id="annotations_id91" style="display:block">
17555 <div class="annotation">
17556 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17557 class="preWrapContainer">
17559 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
17567 <td class="firstColumn"><b>Type</b></td>
17568 <td><b>xs:ID</b></td>
17571 <td class="firstColumn">
17572 <div class="floatLeft"><b>Properties</b></div>
17573 <div class="floatRight"><input id="button_properties_id91" type="image" src="images/button_minus.gif"
17575 onclick="switchState('properties_id91');"
17576 class="control" /></div>
17579 <div id="properties_id91" style="display:block">
17580 <table class="propertiesTable">
17582 <td class="firstColumn">use:
17585 <td><b>optional</b></td>
17592 <td class="firstColumn">
17593 <div class="floatLeft"><b>Used by</b></div>
17594 <div class="floatRight"><input id="button_usedBy_id91" type="image" src="images/button_minus.gif" value="-"
17595 onclick="switchState('usedBy_id91');"
17596 class="control" /></div>
17599 <div id="usedBy_id91" style="display:block">
17600 <table class="usedByTable">
17602 <td class="firstColumn">Element </td>
17603 <td><b><a href="vamsasDocument1.html#id84" target="mainFrame"
17604 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17605 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:annotationElement</a></b></td>
17612 <td class="firstColumn">
17613 <div class="floatLeft"><b>Source</b></div>
17614 <div class="floatRight"><input id="button_source_id91" type="image" src="images/button_minus.gif" value="-"
17615 onclick="switchState('source_id91');"
17616 class="control" /></div>
17619 <div id="source_id91" style="display:block">
17620 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17621 class="preWrapContainer">
17623 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
17624 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
17625 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17626 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
17627 </span><span class="tokenElement"></xs:attribute></span></pre></td>
17634 <td class="firstColumn"><b>Schema location</b></td>
17635 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17640 <td class="rt_lineRight"></td>
17643 <td class="rt_cornerBottomLeft"></td>
17644 <td class="rt_lineBottom"></td>
17645 <td class="rt_cornerBottomRight"></td>
17647 </table><a id="id93"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id92" target="mainFrame"
17648 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17649 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:score</a></b>/<b><a href="vamsasDocument1.html#id80" target="mainFrame"
17650 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17651 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/@name</span></div>
17654 <td class="rt_cornerTopLeft"></td>
17655 <td class="rt_lineTop"></td>
17656 <td class="rt_cornerTopRight"></td>
17659 <td class="rt_lineLeft"></td>
17660 <td class="rt_content">
17661 <table class="component">
17664 <td class="firstColumn"><b>Namespace</b></td>
17665 <td>No namespace</td>
17668 <td class="firstColumn"><b>Type</b></td>
17669 <td><b>xs:string</b></td>
17672 <td class="firstColumn">
17673 <div class="floatLeft"><b>Properties</b></div>
17674 <div class="floatRight"><input id="button_properties_id93" type="image" src="images/button_minus.gif"
17676 onclick="switchState('properties_id93');"
17677 class="control" /></div>
17680 <div id="properties_id93" style="display:block">
17681 <table class="propertiesTable">
17683 <td class="firstColumn">use:
17686 <td><b>optional</b></td>
17689 <td class="firstColumn">default:
17692 <td><b>score</b></td>
17699 <td class="firstColumn">
17700 <div class="floatLeft"><b>Used by</b></div>
17701 <div class="floatRight"><input id="button_usedBy_id93" type="image" src="images/button_minus.gif" value="-"
17702 onclick="switchState('usedBy_id93');"
17703 class="control" /></div>
17706 <div id="usedBy_id93" style="display:block">
17707 <table class="usedByTable">
17709 <td class="firstColumn">Element </td>
17710 <td><b><a href="vamsasDocument1.html#id92" target="mainFrame"
17711 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17712 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation/vamsas:score</a></b></td>
17719 <td class="firstColumn">
17720 <div class="floatLeft"><b>Source</b></div>
17721 <div class="floatRight"><input id="button_source_id93" type="image" src="images/button_minus.gif" value="-"
17722 onclick="switchState('source_id93');"
17723 class="control" /></div>
17726 <div id="source_id93" style="display:block">
17727 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17728 class="preWrapContainer">
17730 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"score"</span><span class="tokenElement">/></span></pre></td>
17737 <td class="firstColumn"><b>Schema location</b></td>
17738 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17743 <td class="rt_lineRight"></td>
17746 <td class="rt_cornerBottomLeft"></td>
17747 <td class="rt_lineBottom"></td>
17748 <td class="rt_cornerBottomRight"></td>
17750 </table><a id="id94"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
17751 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17752 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/@id</span></div>
17755 <td class="rt_cornerTopLeft"></td>
17756 <td class="rt_lineTop"></td>
17757 <td class="rt_cornerTopRight"></td>
17760 <td class="rt_lineLeft"></td>
17761 <td class="rt_content">
17762 <table class="component">
17765 <td class="firstColumn"><b>Namespace</b></td>
17766 <td>No namespace</td>
17769 <td class="firstColumn">
17770 <div class="floatLeft"><b>Annotations</b></div>
17771 <div class="floatRight"><input id="button_annotations_id94" type="image" src="images/button_minus.gif"
17773 onclick="switchState('annotations_id94');"
17774 class="control" /></div>
17777 <div id="annotations_id94" style="display:block">
17778 <div class="annotation">
17779 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17780 class="preWrapContainer">
17782 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
17790 <td class="firstColumn"><b>Type</b></td>
17791 <td><b>xs:ID</b></td>
17794 <td class="firstColumn">
17795 <div class="floatLeft"><b>Properties</b></div>
17796 <div class="floatRight"><input id="button_properties_id94" type="image" src="images/button_minus.gif"
17798 onclick="switchState('properties_id94');"
17799 class="control" /></div>
17802 <div id="properties_id94" style="display:block">
17803 <table class="propertiesTable">
17805 <td class="firstColumn">use:
17808 <td><b>optional</b></td>
17815 <td class="firstColumn">
17816 <div class="floatLeft"><b>Used by</b></div>
17817 <div class="floatRight"><input id="button_usedBy_id94" type="image" src="images/button_minus.gif" value="-"
17818 onclick="switchState('usedBy_id94');"
17819 class="control" /></div>
17822 <div id="usedBy_id94" style="display:block">
17823 <table class="usedByTable">
17825 <td class="firstColumn">Complex Type </td>
17826 <td><b><a href="vamsasDocument1.html#id80" target="mainFrame"
17827 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17828 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
17835 <td class="firstColumn">
17836 <div class="floatLeft"><b>Source</b></div>
17837 <div class="floatRight"><input id="button_source_id94" type="image" src="images/button_minus.gif" value="-"
17838 onclick="switchState('source_id94');"
17839 class="control" /></div>
17842 <div id="source_id94" style="display:block">
17843 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17844 class="preWrapContainer">
17846 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
17847 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
17848 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
17849 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
17850 </span><span class="tokenElement"></xs:attribute></span></pre></td>
17857 <td class="firstColumn"><b>Schema location</b></td>
17858 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17863 <td class="rt_lineRight"></td>
17866 <td class="rt_cornerBottomLeft"></td>
17867 <td class="rt_lineBottom"></td>
17868 <td class="rt_cornerBottomRight"></td>
17870 </table><a id="id95"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
17871 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17872 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/@modifiable</span></div>
17875 <td class="rt_cornerTopLeft"></td>
17876 <td class="rt_lineTop"></td>
17877 <td class="rt_cornerTopRight"></td>
17880 <td class="rt_lineLeft"></td>
17881 <td class="rt_content">
17882 <table class="component">
17885 <td class="firstColumn"><b>Namespace</b></td>
17886 <td>No namespace</td>
17889 <td class="firstColumn"><b>Type</b></td>
17890 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
17891 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17892 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
17895 <td class="firstColumn">
17896 <div class="floatLeft"><b>Properties</b></div>
17897 <div class="floatRight"><input id="button_properties_id95" type="image" src="images/button_minus.gif"
17899 onclick="switchState('properties_id95');"
17900 class="control" /></div>
17903 <div id="properties_id95" style="display:block">
17904 <table class="propertiesTable">
17906 <td class="firstColumn">use:
17909 <td><b>optional</b></td>
17916 <td class="firstColumn">
17917 <div class="floatLeft"><b>Used by</b></div>
17918 <div class="floatRight"><input id="button_usedBy_id95" type="image" src="images/button_minus.gif" value="-"
17919 onclick="switchState('usedBy_id95');"
17920 class="control" /></div>
17923 <div id="usedBy_id95" style="display:block">
17924 <table class="usedByTable">
17926 <td class="firstColumn">Complex Type </td>
17927 <td><b><a href="vamsasDocument1.html#id80" target="mainFrame"
17928 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17929 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
17936 <td class="firstColumn">
17937 <div class="floatLeft"><b>Source</b></div>
17938 <div class="floatRight"><input id="button_source_id95" type="image" src="images/button_minus.gif" value="-"
17939 onclick="switchState('source_id95');"
17940 class="control" /></div>
17943 <div id="source_id95" style="display:block">
17944 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17945 class="preWrapContainer">
17947 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
17954 <td class="firstColumn"><b>Schema location</b></td>
17955 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
17960 <td class="rt_lineRight"></td>
17963 <td class="rt_cornerBottomLeft"></td>
17964 <td class="rt_lineBottom"></td>
17965 <td class="rt_cornerBottomRight"></td>
17967 </table><a id="id96"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
17968 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
17969 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/@group</span></div>
17972 <td class="rt_cornerTopLeft"></td>
17973 <td class="rt_lineTop"></td>
17974 <td class="rt_cornerTopRight"></td>
17977 <td class="rt_lineLeft"></td>
17978 <td class="rt_content">
17979 <table class="component">
17982 <td class="firstColumn"><b>Namespace</b></td>
17983 <td>No namespace</td>
17986 <td class="firstColumn">
17987 <div class="floatLeft"><b>Annotations</b></div>
17988 <div class="floatRight"><input id="button_annotations_id96" type="image" src="images/button_minus.gif"
17990 onclick="switchState('annotations_id96');"
17991 class="control" /></div>
17994 <div id="annotations_id96" style="display:block">
17995 <div class="annotation">
17996 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
17997 class="preWrapContainer">
17999 <td width="100%"><pre><span class="tokenText">Annotation with the same non-empty group name are grouped</span><span class="tokenIndent">
18000 </span><span class="tokenText">together</span></pre></td>
18008 <td class="firstColumn"><b>Type</b></td>
18009 <td><b>xs:string</b></td>
18012 <td class="firstColumn">
18013 <div class="floatLeft"><b>Properties</b></div>
18014 <div class="floatRight"><input id="button_properties_id96" type="image" src="images/button_minus.gif"
18016 onclick="switchState('properties_id96');"
18017 class="control" /></div>
18020 <div id="properties_id96" style="display:block">
18021 <table class="propertiesTable">
18023 <td class="firstColumn">use:
18026 <td><b>optional</b></td>
18029 <td class="firstColumn">default:
18039 <td class="firstColumn">
18040 <div class="floatLeft"><b>Used by</b></div>
18041 <div class="floatRight"><input id="button_usedBy_id96" type="image" src="images/button_minus.gif" value="-"
18042 onclick="switchState('usedBy_id96');"
18043 class="control" /></div>
18046 <div id="usedBy_id96" style="display:block">
18047 <table class="usedByTable">
18049 <td class="firstColumn">Complex Type </td>
18050 <td><b><a href="vamsasDocument1.html#id80" target="mainFrame"
18051 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18052 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
18059 <td class="firstColumn">
18060 <div class="floatLeft"><b>Source</b></div>
18061 <div class="floatRight"><input id="button_source_id96" type="image" src="images/button_minus.gif" value="-"
18062 onclick="switchState('source_id96');"
18063 class="control" /></div>
18066 <div id="source_id96" style="display:block">
18067 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18068 class="preWrapContainer">
18070 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"group"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">""</span><span class="tokenElement">></span><span class="tokenIndent">
18071 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18072 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Annotation with the same non-empty group name are grouped together</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18073 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18074 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18081 <td class="firstColumn"><b>Schema location</b></td>
18082 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18087 <td class="rt_lineRight"></td>
18090 <td class="rt_cornerBottomLeft"></td>
18091 <td class="rt_lineBottom"></td>
18092 <td class="rt_cornerBottomRight"></td>
18094 </table><a id="id97"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id80" target="mainFrame"
18095 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18096 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b>/@type</span></div>
18099 <td class="rt_cornerTopLeft"></td>
18100 <td class="rt_lineTop"></td>
18101 <td class="rt_cornerTopRight"></td>
18104 <td class="rt_lineLeft"></td>
18105 <td class="rt_content">
18106 <table class="component">
18109 <td class="firstColumn"><b>Namespace</b></td>
18110 <td>No namespace</td>
18113 <td class="firstColumn">
18114 <div class="floatLeft"><b>Annotations</b></div>
18115 <div class="floatRight"><input id="button_annotations_id97" type="image" src="images/button_minus.gif"
18117 onclick="switchState('annotations_id97');"
18118 class="control" /></div>
18121 <div id="annotations_id97" style="display:block">
18122 <div class="annotation">
18123 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18124 class="preWrapContainer">
18126 <td width="100%"><pre><span class="tokenText">A Das Feature has both a type and a Type ID. We go the</span><span class="tokenIndent">
18127 </span><span class="tokenText">route of requiring the type string to be taken from a controlled</span><span class="tokenIndent">
18128 </span><span class="tokenText">vocabulary if an application expects others to make sense of it. The</span><span class="tokenIndent">
18129 </span><span class="tokenText">type may qualified - so uniprot:CHAIN is a valid type name, and</span><span class="tokenIndent">
18130 </span><span class="tokenText">considered distinct from someotherDB:CHAIN</span></pre></td>
18138 <td class="firstColumn"><b>Type</b></td>
18139 <td><b>xs:string</b></td>
18142 <td class="firstColumn">
18143 <div class="floatLeft"><b>Properties</b></div>
18144 <div class="floatRight"><input id="button_properties_id97" type="image" src="images/button_minus.gif"
18146 onclick="switchState('properties_id97');"
18147 class="control" /></div>
18150 <div id="properties_id97" style="display:block">
18151 <table class="propertiesTable">
18153 <td class="firstColumn">use:
18156 <td><b>required</b></td>
18163 <td class="firstColumn">
18164 <div class="floatLeft"><b>Used by</b></div>
18165 <div class="floatRight"><input id="button_usedBy_id97" type="image" src="images/button_minus.gif" value="-"
18166 onclick="switchState('usedBy_id97');"
18167 class="control" /></div>
18170 <div id="usedBy_id97" style="display:block">
18171 <table class="usedByTable">
18173 <td class="firstColumn">Complex Type </td>
18174 <td><b><a href="vamsasDocument1.html#id80" target="mainFrame"
18175 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18176 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:rangeAnnotation</a></b></td>
18183 <td class="firstColumn">
18184 <div class="floatLeft"><b>Source</b></div>
18185 <div class="floatRight"><input id="button_source_id97" type="image" src="images/button_minus.gif" value="-"
18186 onclick="switchState('source_id97');"
18187 class="control" /></div>
18190 <div id="source_id97" style="display:block">
18191 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18192 class="preWrapContainer">
18194 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
18195 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18196 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">A Das Feature has both a type and a Type ID. We go the route of requiring the type string to be taken from a controlled vocabulary if an application expects others to make sense of it. The type may qualified - so uniprot:CHAIN is a valid type name, and considered distinct from someotherDB:CHAIN</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18197 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18198 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18205 <td class="firstColumn"><b>Schema location</b></td>
18206 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18211 <td class="rt_lineRight"></td>
18214 <td class="rt_cornerBottomLeft"></td>
18215 <td class="rt_lineBottom"></td>
18216 <td class="rt_cornerBottomRight"></td>
18218 </table><a id="id98"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id79" target="mainFrame"
18219 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18220 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSetAnnotations</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18221 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18222 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@seqRef</span></div>
18225 <td class="rt_cornerTopLeft"></td>
18226 <td class="rt_lineTop"></td>
18227 <td class="rt_cornerTopRight"></td>
18230 <td class="rt_lineLeft"></td>
18231 <td class="rt_content">
18232 <table class="component">
18235 <td class="firstColumn"><b>Namespace</b></td>
18236 <td>No namespace</td>
18239 <td class="firstColumn">
18240 <div class="floatLeft"><b>Annotations</b></div>
18241 <div class="floatRight"><input id="button_annotations_id98" type="image" src="images/button_minus.gif"
18243 onclick="switchState('annotations_id98');"
18244 class="control" /></div>
18247 <div id="annotations_id98" style="display:block">
18248 <div class="annotation">
18249 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18250 class="preWrapContainer">
18252 <td width="100%"><pre><span class="tokenText">annotation is associated with a</span><span class="tokenIndent">
18253 </span><span class="tokenText">particular dataset sequence</span></pre></td>
18261 <td class="firstColumn"><b>Type</b></td>
18262 <td><b>xs:IDREFS</b></td>
18265 <td class="firstColumn">
18266 <div class="floatLeft"><b>Properties</b></div>
18267 <div class="floatRight"><input id="button_properties_id98" type="image" src="images/button_minus.gif"
18269 onclick="switchState('properties_id98');"
18270 class="control" /></div>
18273 <div id="properties_id98" style="display:block">
18274 <table class="propertiesTable">
18276 <td class="firstColumn">use:
18279 <td><b>required</b></td>
18286 <td class="firstColumn">
18287 <div class="floatLeft"><b>Used by</b></div>
18288 <div class="floatRight"><input id="button_usedBy_id98" type="image" src="images/button_minus.gif" value="-"
18289 onclick="switchState('usedBy_id98');"
18290 class="control" /></div>
18293 <div id="usedBy_id98" style="display:block">
18294 <table class="usedByTable">
18296 <td class="firstColumn">Element </td>
18297 <td><b><a href="vamsasDocument1.html#id79" target="mainFrame"
18298 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18299 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:DataSetAnnotations</a></b></td>
18306 <td class="firstColumn">
18307 <div class="floatLeft"><b>Source</b></div>
18308 <div class="floatRight"><input id="button_source_id98" type="image" src="images/button_minus.gif" value="-"
18309 onclick="switchState('source_id98');"
18310 class="control" /></div>
18313 <div id="source_id98" style="display:block">
18314 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18315 class="preWrapContainer">
18317 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqRef"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
18318 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18319 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a particular dataset sequence</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18320 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18321 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18328 <td class="firstColumn"><b>Schema location</b></td>
18329 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18334 <td class="rt_lineRight"></td>
18337 <td class="rt_cornerBottomLeft"></td>
18338 <td class="rt_lineBottom"></td>
18339 <td class="rt_cornerBottomRight"></td>
18341 </table><a id="id101"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id100" target="mainFrame"
18342 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18343 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentAnnotation</a></b>/<b><a href="vamsasDocument1.html#id99" target="mainFrame"
18344 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18345 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18346 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18347 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@graph</span></div>
18350 <td class="rt_cornerTopLeft"></td>
18351 <td class="rt_lineTop"></td>
18352 <td class="rt_cornerTopRight"></td>
18355 <td class="rt_lineLeft"></td>
18356 <td class="rt_content">
18357 <table class="component">
18360 <td class="firstColumn"><b>Namespace</b></td>
18361 <td>No namespace</td>
18364 <td class="firstColumn">
18365 <div class="floatLeft"><b>Annotations</b></div>
18366 <div class="floatRight"><input id="button_annotations_id101" type="image" src="images/button_minus.gif"
18368 onclick="switchState('annotations_id101');"
18369 class="control" /></div>
18372 <div id="annotations_id101" style="display:block">
18373 <div class="annotation">
18374 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18375 class="preWrapContainer">
18377 <td width="100%"><pre><span class="tokenText">TODO: decide if this flag is</span><span class="tokenIndent">
18378 </span><span class="tokenText">redundant - when true it would suggest that</span><span class="tokenIndent">
18379 </span><span class="tokenText">the annotationElement values together form a</span><span class="tokenIndent">
18380 </span><span class="tokenText">graph</span></pre></td>
18388 <td class="firstColumn"><b>Type</b></td>
18389 <td><b>xs:boolean</b></td>
18392 <td class="firstColumn">
18393 <div class="floatLeft"><b>Properties</b></div>
18394 <div class="floatRight"><input id="button_properties_id101" type="image" src="images/button_minus.gif"
18396 onclick="switchState('properties_id101');"
18397 class="control" /></div>
18400 <div id="properties_id101" style="display:block">
18401 <table class="propertiesTable">
18403 <td class="firstColumn">use:
18406 <td><b>required</b></td>
18413 <td class="firstColumn">
18414 <div class="floatLeft"><b>Used by</b></div>
18415 <div class="floatRight"><input id="button_usedBy_id101" type="image" src="images/button_minus.gif" value="-"
18416 onclick="switchState('usedBy_id101');"
18417 class="control" /></div>
18420 <div id="usedBy_id101" style="display:block">
18421 <table class="usedByTable">
18423 <td class="firstColumn">Element </td>
18424 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
18425 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18426 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b></td>
18433 <td class="firstColumn">
18434 <div class="floatLeft"><b>Source</b></div>
18435 <div class="floatRight"><input id="button_source_id101" type="image" src="images/button_minus.gif" value="-"
18436 onclick="switchState('source_id101');"
18437 class="control" /></div>
18440 <div id="source_id101" style="display:block">
18441 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18442 class="preWrapContainer">
18444 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
18445 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18446 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18447 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18448 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18455 <td class="firstColumn"><b>Schema location</b></td>
18456 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18461 <td class="rt_lineRight"></td>
18464 <td class="rt_cornerBottomLeft"></td>
18465 <td class="rt_lineBottom"></td>
18466 <td class="rt_cornerBottomRight"></td>
18468 </table><a id="id102"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id100" target="mainFrame"
18469 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18470 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentAnnotation</a></b>/<b><a href="vamsasDocument1.html#id99" target="mainFrame"
18471 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18472 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18473 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18474 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@seqrefs</span></div>
18477 <td class="rt_cornerTopLeft"></td>
18478 <td class="rt_lineTop"></td>
18479 <td class="rt_cornerTopRight"></td>
18482 <td class="rt_lineLeft"></td>
18483 <td class="rt_content">
18484 <table class="component">
18487 <td class="firstColumn"><b>Namespace</b></td>
18488 <td>No namespace</td>
18491 <td class="firstColumn">
18492 <div class="floatLeft"><b>Annotations</b></div>
18493 <div class="floatRight"><input id="button_annotations_id102" type="image" src="images/button_minus.gif"
18495 onclick="switchState('annotations_id102');"
18496 class="control" /></div>
18499 <div id="annotations_id102" style="display:block">
18500 <div class="annotation">
18501 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18502 class="preWrapContainer">
18504 <td width="100%"><pre><span class="tokenText">annotation is associated with</span><span class="tokenIndent">
18505 </span><span class="tokenText">a range on a particular group of alignment</span><span class="tokenIndent">
18506 </span><span class="tokenText">sequences</span></pre></td>
18514 <td class="firstColumn"><b>Type</b></td>
18515 <td><b>xs:IDREFS</b></td>
18518 <td class="firstColumn">
18519 <div class="floatLeft"><b>Properties</b></div>
18520 <div class="floatRight"><input id="button_properties_id102" type="image" src="images/button_minus.gif"
18522 onclick="switchState('properties_id102');"
18523 class="control" /></div>
18526 <div id="properties_id102" style="display:block">
18527 <table class="propertiesTable">
18529 <td class="firstColumn">use:
18532 <td><b>optional</b></td>
18539 <td class="firstColumn">
18540 <div class="floatLeft"><b>Used by</b></div>
18541 <div class="floatRight"><input id="button_usedBy_id102" type="image" src="images/button_minus.gif" value="-"
18542 onclick="switchState('usedBy_id102');"
18543 class="control" /></div>
18546 <div id="usedBy_id102" style="display:block">
18547 <table class="usedByTable">
18549 <td class="firstColumn">Element </td>
18550 <td><b><a href="vamsasDocument1.html#id100" target="mainFrame"
18551 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18552 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:AlignmentAnnotation</a></b></td>
18559 <td class="firstColumn">
18560 <div class="floatLeft"><b>Source</b></div>
18561 <div class="floatRight"><input id="button_source_id102" type="image" src="images/button_minus.gif" value="-"
18562 onclick="switchState('source_id102');"
18563 class="control" /></div>
18566 <div id="source_id102" style="display:block">
18567 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18568 class="preWrapContainer">
18570 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"seqrefs"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREFS"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
18571 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18572 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">annotation is associated with a range on a particular group of alignment sequences</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18573 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18574 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18581 <td class="firstColumn"><b>Schema location</b></td>
18582 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18587 <td class="rt_lineRight"></td>
18590 <td class="rt_cornerBottomLeft"></td>
18591 <td class="rt_lineBottom"></td>
18592 <td class="rt_cornerBottomRight"></td>
18594 </table><a id="id105"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id104" target="mainFrame"
18595 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18596 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:AlignmentSequenceAnnotation</a></b>/<b><a href="vamsasDocument1.html#id103" target="mainFrame"
18597 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18598 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:alignmentSequence</a></b>/<b><a href="vamsasDocument1.html#id99" target="mainFrame"
18599 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18600 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18601 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18602 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@graph</span></div>
18605 <td class="rt_cornerTopLeft"></td>
18606 <td class="rt_lineTop"></td>
18607 <td class="rt_cornerTopRight"></td>
18610 <td class="rt_lineLeft"></td>
18611 <td class="rt_content">
18612 <table class="component">
18615 <td class="firstColumn"><b>Namespace</b></td>
18616 <td>No namespace</td>
18619 <td class="firstColumn">
18620 <div class="floatLeft"><b>Annotations</b></div>
18621 <div class="floatRight"><input id="button_annotations_id105" type="image" src="images/button_minus.gif"
18623 onclick="switchState('annotations_id105');"
18624 class="control" /></div>
18627 <div id="annotations_id105" style="display:block">
18628 <div class="annotation">
18629 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18630 class="preWrapContainer">
18632 <td width="100%"><pre><span class="tokenText">TODO:</span><span class="tokenIndent">
18633 </span><span class="tokenText">decide if this flag is</span><span class="tokenIndent">
18634 </span><span class="tokenText">redundant - when true it</span><span class="tokenIndent">
18635 </span><span class="tokenText">would suggest that the</span><span class="tokenIndent">
18636 </span><span class="tokenText">annotationElement values</span><span class="tokenIndent">
18637 </span><span class="tokenText">together form a graph</span></pre></td>
18645 <td class="firstColumn"><b>Type</b></td>
18646 <td><b>xs:boolean</b></td>
18649 <td class="firstColumn">
18650 <div class="floatLeft"><b>Properties</b></div>
18651 <div class="floatRight"><input id="button_properties_id105" type="image" src="images/button_minus.gif"
18653 onclick="switchState('properties_id105');"
18654 class="control" /></div>
18657 <div id="properties_id105" style="display:block">
18658 <table class="propertiesTable">
18660 <td class="firstColumn">use:
18663 <td><b>required</b></td>
18670 <td class="firstColumn">
18671 <div class="floatLeft"><b>Used by</b></div>
18672 <div class="floatRight"><input id="button_usedBy_id105" type="image" src="images/button_minus.gif" value="-"
18673 onclick="switchState('usedBy_id105');"
18674 class="control" /></div>
18677 <div id="usedBy_id105" style="display:block">
18678 <table class="usedByTable">
18680 <td class="firstColumn">Element </td>
18681 <td><b><a href="vamsasDocument1.html#id104" target="mainFrame"
18682 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18683 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence/vamsas:AlignmentSequenceAnnotation</a></b></td>
18690 <td class="firstColumn">
18691 <div class="floatLeft"><b>Source</b></div>
18692 <div class="floatRight"><input id="button_source_id105" type="image" src="images/button_minus.gif" value="-"
18693 onclick="switchState('source_id105');"
18694 class="control" /></div>
18697 <div id="source_id105" style="display:block">
18698 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18699 class="preWrapContainer">
18701 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"graph"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
18702 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18703 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">TODO: decide if this flag is redundant - when true it would suggest that the annotationElement values together form a graph</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18704 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18705 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18712 <td class="firstColumn"><b>Schema location</b></td>
18713 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18718 <td class="rt_lineRight"></td>
18721 <td class="rt_cornerBottomLeft"></td>
18722 <td class="rt_lineBottom"></td>
18723 <td class="rt_cornerBottomRight"></td>
18725 </table><a id="id106"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id103" target="mainFrame"
18726 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18727 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:alignmentSequence</a></b>/<b><a href="vamsasDocument1.html#id99" target="mainFrame"
18728 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18729 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18730 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18731 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
18734 <td class="rt_cornerTopLeft"></td>
18735 <td class="rt_lineTop"></td>
18736 <td class="rt_cornerTopRight"></td>
18739 <td class="rt_lineLeft"></td>
18740 <td class="rt_content">
18741 <table class="component">
18744 <td class="firstColumn"><b>Namespace</b></td>
18745 <td>No namespace</td>
18748 <td class="firstColumn">
18749 <div class="floatLeft"><b>Annotations</b></div>
18750 <div class="floatRight"><input id="button_annotations_id106" type="image" src="images/button_minus.gif"
18752 onclick="switchState('annotations_id106');"
18753 class="control" /></div>
18756 <div id="annotations_id106" style="display:block">
18757 <div class="annotation">
18758 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18759 class="preWrapContainer">
18761 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object</span><span class="tokenIndent">
18762 </span><span class="tokenText">referencing</span></pre></td>
18770 <td class="firstColumn"><b>Type</b></td>
18771 <td><b>xs:ID</b></td>
18774 <td class="firstColumn">
18775 <div class="floatLeft"><b>Properties</b></div>
18776 <div class="floatRight"><input id="button_properties_id106" type="image" src="images/button_minus.gif"
18778 onclick="switchState('properties_id106');"
18779 class="control" /></div>
18782 <div id="properties_id106" style="display:block">
18783 <table class="propertiesTable">
18785 <td class="firstColumn">use:
18788 <td><b>optional</b></td>
18795 <td class="firstColumn">
18796 <div class="floatLeft"><b>Used by</b></div>
18797 <div class="floatRight"><input id="button_usedBy_id106" type="image" src="images/button_minus.gif" value="-"
18798 onclick="switchState('usedBy_id106');"
18799 class="control" /></div>
18802 <div id="usedBy_id106" style="display:block">
18803 <table class="usedByTable">
18805 <td class="firstColumn">Element </td>
18806 <td><b><a href="vamsasDocument1.html#id103" target="mainFrame"
18807 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18808 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence</a></b></td>
18815 <td class="firstColumn">
18816 <div class="floatLeft"><b>Source</b></div>
18817 <div class="floatRight"><input id="button_source_id106" type="image" src="images/button_minus.gif" value="-"
18818 onclick="switchState('source_id106');"
18819 class="control" /></div>
18822 <div id="source_id106" style="display:block">
18823 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18824 class="preWrapContainer">
18826 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
18827 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18828 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18829 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18830 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18837 <td class="firstColumn"><b>Schema location</b></td>
18838 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18843 <td class="rt_lineRight"></td>
18846 <td class="rt_cornerBottomLeft"></td>
18847 <td class="rt_lineBottom"></td>
18848 <td class="rt_cornerBottomRight"></td>
18850 </table><a id="id107"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id103" target="mainFrame"
18851 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18852 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:alignmentSequence</a></b>/<b><a href="vamsasDocument1.html#id99" target="mainFrame"
18853 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18854 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18855 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18856 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@refid</span></div>
18859 <td class="rt_cornerTopLeft"></td>
18860 <td class="rt_lineTop"></td>
18861 <td class="rt_cornerTopRight"></td>
18864 <td class="rt_lineLeft"></td>
18865 <td class="rt_content">
18866 <table class="component">
18869 <td class="firstColumn"><b>Namespace</b></td>
18870 <td>No namespace</td>
18873 <td class="firstColumn">
18874 <div class="floatLeft"><b>Annotations</b></div>
18875 <div class="floatRight"><input id="button_annotations_id107" type="image" src="images/button_minus.gif"
18877 onclick="switchState('annotations_id107');"
18878 class="control" /></div>
18881 <div id="annotations_id107" style="display:block">
18882 <div class="annotation">
18883 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18884 class="preWrapContainer">
18886 <td width="100%"><pre><span class="tokenText">Dataset Sequence from which</span><span class="tokenIndent">
18887 </span><span class="tokenText">this alignment sequence is taken from</span></pre></td>
18895 <td class="firstColumn"><b>Type</b></td>
18896 <td><b>xs:IDREF</b></td>
18899 <td class="firstColumn">
18900 <div class="floatLeft"><b>Properties</b></div>
18901 <div class="floatRight"><input id="button_properties_id107" type="image" src="images/button_minus.gif"
18903 onclick="switchState('properties_id107');"
18904 class="control" /></div>
18907 <div id="properties_id107" style="display:block">
18908 <table class="propertiesTable">
18910 <td class="firstColumn">use:
18913 <td><b>required</b></td>
18920 <td class="firstColumn">
18921 <div class="floatLeft"><b>Used by</b></div>
18922 <div class="floatRight"><input id="button_usedBy_id107" type="image" src="images/button_minus.gif" value="-"
18923 onclick="switchState('usedBy_id107');"
18924 class="control" /></div>
18927 <div id="usedBy_id107" style="display:block">
18928 <table class="usedByTable">
18930 <td class="firstColumn">Element </td>
18931 <td><b><a href="vamsasDocument1.html#id103" target="mainFrame"
18932 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18933 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment/vamsas:alignmentSequence</a></b></td>
18940 <td class="firstColumn">
18941 <div class="floatLeft"><b>Source</b></div>
18942 <div class="floatRight"><input id="button_source_id107" type="image" src="images/button_minus.gif" value="-"
18943 onclick="switchState('source_id107');"
18944 class="control" /></div>
18947 <div id="source_id107" style="display:block">
18948 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
18949 class="preWrapContainer">
18951 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"refid"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
18952 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
18953 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Dataset Sequence from which this alignment sequence is taken from</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
18954 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
18955 </span><span class="tokenElement"></xs:attribute></span></pre></td>
18962 <td class="firstColumn"><b>Schema location</b></td>
18963 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
18968 <td class="rt_lineRight"></td>
18971 <td class="rt_cornerBottomLeft"></td>
18972 <td class="rt_lineBottom"></td>
18973 <td class="rt_cornerBottomRight"></td>
18975 </table><a id="id108"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id99" target="mainFrame"
18976 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18977 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
18978 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
18979 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@gapChar</span></div>
18982 <td class="rt_cornerTopLeft"></td>
18983 <td class="rt_lineTop"></td>
18984 <td class="rt_cornerTopRight"></td>
18987 <td class="rt_lineLeft"></td>
18988 <td class="rt_content">
18989 <table class="component">
18992 <td class="firstColumn"><b>Namespace</b></td>
18993 <td>No namespace</td>
18996 <td class="firstColumn"><b>Type</b></td>
18997 <td><b>xs:string</b></td>
19000 <td class="firstColumn">
19001 <div class="floatLeft"><b>Properties</b></div>
19002 <div class="floatRight"><input id="button_properties_id108" type="image" src="images/button_minus.gif"
19004 onclick="switchState('properties_id108');"
19005 class="control" /></div>
19008 <div id="properties_id108" style="display:block">
19009 <table class="propertiesTable">
19011 <td class="firstColumn">use:
19014 <td><b>required</b></td>
19021 <td class="firstColumn">
19022 <div class="floatLeft"><b>Used by</b></div>
19023 <div class="floatRight"><input id="button_usedBy_id108" type="image" src="images/button_minus.gif" value="-"
19024 onclick="switchState('usedBy_id108');"
19025 class="control" /></div>
19028 <div id="usedBy_id108" style="display:block">
19029 <table class="usedByTable">
19031 <td class="firstColumn">Element </td>
19032 <td><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19033 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19034 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b></td>
19041 <td class="firstColumn">
19042 <div class="floatLeft"><b>Source</b></div>
19043 <div class="floatRight"><input id="button_source_id108" type="image" src="images/button_minus.gif" value="-"
19044 onclick="switchState('source_id108');"
19045 class="control" /></div>
19048 <div id="source_id108" style="display:block">
19049 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19050 class="preWrapContainer">
19052 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"gapChar"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
19059 <td class="firstColumn"><b>Schema location</b></td>
19060 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19065 <td class="rt_lineRight"></td>
19068 <td class="rt_cornerBottomLeft"></td>
19069 <td class="rt_lineBottom"></td>
19070 <td class="rt_cornerBottomRight"></td>
19072 </table><a id="id109"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19073 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19074 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
19075 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19076 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@aligned</span></div>
19079 <td class="rt_cornerTopLeft"></td>
19080 <td class="rt_lineTop"></td>
19081 <td class="rt_cornerTopRight"></td>
19084 <td class="rt_lineLeft"></td>
19085 <td class="rt_content">
19086 <table class="component">
19089 <td class="firstColumn"><b>Namespace</b></td>
19090 <td>No namespace</td>
19093 <td class="firstColumn"><b>Type</b></td>
19094 <td><b>xs:boolean</b></td>
19097 <td class="firstColumn">
19098 <div class="floatLeft"><b>Properties</b></div>
19099 <div class="floatRight"><input id="button_properties_id109" type="image" src="images/button_minus.gif"
19101 onclick="switchState('properties_id109');"
19102 class="control" /></div>
19105 <div id="properties_id109" style="display:block">
19106 <table class="propertiesTable">
19108 <td class="firstColumn">use:
19111 <td><b>optional</b></td>
19118 <td class="firstColumn">
19119 <div class="floatLeft"><b>Used by</b></div>
19120 <div class="floatRight"><input id="button_usedBy_id109" type="image" src="images/button_minus.gif" value="-"
19121 onclick="switchState('usedBy_id109');"
19122 class="control" /></div>
19125 <div id="usedBy_id109" style="display:block">
19126 <table class="usedByTable">
19128 <td class="firstColumn">Element </td>
19129 <td><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19130 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19131 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b></td>
19138 <td class="firstColumn">
19139 <div class="floatLeft"><b>Source</b></div>
19140 <div class="floatRight"><input id="button_source_id109" type="image" src="images/button_minus.gif" value="-"
19141 onclick="switchState('source_id109');"
19142 class="control" /></div>
19145 <div id="source_id109" style="display:block">
19146 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19147 class="preWrapContainer">
19149 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"aligned"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
19156 <td class="firstColumn"><b>Schema location</b></td>
19157 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19162 <td class="rt_lineRight"></td>
19165 <td class="rt_cornerBottomLeft"></td>
19166 <td class="rt_lineBottom"></td>
19167 <td class="rt_cornerBottomRight"></td>
19169 </table><a id="id110"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19170 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19171 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
19172 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19173 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
19176 <td class="rt_cornerTopLeft"></td>
19177 <td class="rt_lineTop"></td>
19178 <td class="rt_cornerTopRight"></td>
19181 <td class="rt_lineLeft"></td>
19182 <td class="rt_content">
19183 <table class="component">
19186 <td class="firstColumn"><b>Namespace</b></td>
19187 <td>No namespace</td>
19190 <td class="firstColumn">
19191 <div class="floatLeft"><b>Annotations</b></div>
19192 <div class="floatRight"><input id="button_annotations_id110" type="image" src="images/button_minus.gif"
19194 onclick="switchState('annotations_id110');"
19195 class="control" /></div>
19198 <div id="annotations_id110" style="display:block">
19199 <div class="annotation">
19200 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19201 class="preWrapContainer">
19203 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
19211 <td class="firstColumn"><b>Type</b></td>
19212 <td><b>xs:ID</b></td>
19215 <td class="firstColumn">
19216 <div class="floatLeft"><b>Properties</b></div>
19217 <div class="floatRight"><input id="button_properties_id110" type="image" src="images/button_minus.gif"
19219 onclick="switchState('properties_id110');"
19220 class="control" /></div>
19223 <div id="properties_id110" style="display:block">
19224 <table class="propertiesTable">
19226 <td class="firstColumn">use:
19229 <td><b>optional</b></td>
19236 <td class="firstColumn">
19237 <div class="floatLeft"><b>Used by</b></div>
19238 <div class="floatRight"><input id="button_usedBy_id110" type="image" src="images/button_minus.gif" value="-"
19239 onclick="switchState('usedBy_id110');"
19240 class="control" /></div>
19243 <div id="usedBy_id110" style="display:block">
19244 <table class="usedByTable">
19246 <td class="firstColumn">Element </td>
19247 <td><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19248 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19249 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b></td>
19256 <td class="firstColumn">
19257 <div class="floatLeft"><b>Source</b></div>
19258 <div class="floatRight"><input id="button_source_id110" type="image" src="images/button_minus.gif" value="-"
19259 onclick="switchState('source_id110');"
19260 class="control" /></div>
19263 <div id="source_id110" style="display:block">
19264 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19265 class="preWrapContainer">
19267 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
19268 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
19269 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
19270 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
19271 </span><span class="tokenElement"></xs:attribute></span></pre></td>
19278 <td class="firstColumn"><b>Schema location</b></td>
19279 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19284 <td class="rt_lineRight"></td>
19287 <td class="rt_cornerBottomLeft"></td>
19288 <td class="rt_lineBottom"></td>
19289 <td class="rt_cornerBottomRight"></td>
19291 </table><a id="id111"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19292 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19293 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Alignment</a></b>/<b><a href="vamsasDocument1.html#id50" target="mainFrame"
19294 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19295 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@modifiable</span></div>
19298 <td class="rt_cornerTopLeft"></td>
19299 <td class="rt_lineTop"></td>
19300 <td class="rt_cornerTopRight"></td>
19303 <td class="rt_lineLeft"></td>
19304 <td class="rt_content">
19305 <table class="component">
19308 <td class="firstColumn"><b>Namespace</b></td>
19309 <td>No namespace</td>
19312 <td class="firstColumn"><b>Type</b></td>
19313 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
19314 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19315 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
19318 <td class="firstColumn">
19319 <div class="floatLeft"><b>Properties</b></div>
19320 <div class="floatRight"><input id="button_properties_id111" type="image" src="images/button_minus.gif"
19322 onclick="switchState('properties_id111');"
19323 class="control" /></div>
19326 <div id="properties_id111" style="display:block">
19327 <table class="propertiesTable">
19329 <td class="firstColumn">use:
19332 <td><b>optional</b></td>
19339 <td class="firstColumn">
19340 <div class="floatLeft"><b>Used by</b></div>
19341 <div class="floatRight"><input id="button_usedBy_id111" type="image" src="images/button_minus.gif" value="-"
19342 onclick="switchState('usedBy_id111');"
19343 class="control" /></div>
19346 <div id="usedBy_id111" style="display:block">
19347 <table class="usedByTable">
19349 <td class="firstColumn">Element </td>
19350 <td><b><a href="vamsasDocument1.html#id99" target="mainFrame"
19351 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19352 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet/vamsas:Alignment</a></b></td>
19359 <td class="firstColumn">
19360 <div class="floatLeft"><b>Source</b></div>
19361 <div class="floatRight"><input id="button_source_id111" type="image" src="images/button_minus.gif" value="-"
19362 onclick="switchState('source_id111');"
19363 class="control" /></div>
19366 <div id="source_id111" style="display:block">
19367 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19368 class="preWrapContainer">
19370 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
19377 <td class="firstColumn"><b>Schema location</b></td>
19378 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19383 <td class="rt_lineRight"></td>
19386 <td class="rt_cornerBottomLeft"></td>
19387 <td class="rt_lineBottom"></td>
19388 <td class="rt_cornerBottomRight"></td>
19390 </table><a id="id112"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id50" target="mainFrame"
19391 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19392 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b>/@id</span></div>
19395 <td class="rt_cornerTopLeft"></td>
19396 <td class="rt_lineTop"></td>
19397 <td class="rt_cornerTopRight"></td>
19400 <td class="rt_lineLeft"></td>
19401 <td class="rt_content">
19402 <table class="component">
19405 <td class="firstColumn"><b>Namespace</b></td>
19406 <td>No namespace</td>
19409 <td class="firstColumn">
19410 <div class="floatLeft"><b>Annotations</b></div>
19411 <div class="floatRight"><input id="button_annotations_id112" type="image" src="images/button_minus.gif"
19413 onclick="switchState('annotations_id112');"
19414 class="control" /></div>
19417 <div id="annotations_id112" style="display:block">
19418 <div class="annotation">
19419 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19420 class="preWrapContainer">
19422 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
19430 <td class="firstColumn"><b>Type</b></td>
19431 <td><b>xs:ID</b></td>
19434 <td class="firstColumn">
19435 <div class="floatLeft"><b>Properties</b></div>
19436 <div class="floatRight"><input id="button_properties_id112" type="image" src="images/button_minus.gif"
19438 onclick="switchState('properties_id112');"
19439 class="control" /></div>
19442 <div id="properties_id112" style="display:block">
19443 <table class="propertiesTable">
19445 <td class="firstColumn">use:
19448 <td><b>optional</b></td>
19455 <td class="firstColumn">
19456 <div class="floatLeft"><b>Used by</b></div>
19457 <div class="floatRight"><input id="button_usedBy_id112" type="image" src="images/button_minus.gif" value="-"
19458 onclick="switchState('usedBy_id112');"
19459 class="control" /></div>
19462 <div id="usedBy_id112" style="display:block">
19463 <table class="usedByTable">
19465 <td class="firstColumn">Element </td>
19466 <td><b><a href="vamsasDocument1.html#id50" target="mainFrame"
19467 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19468 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:DataSet</a></b></td>
19475 <td class="firstColumn">
19476 <div class="floatLeft"><b>Source</b></div>
19477 <div class="floatRight"><input id="button_source_id112" type="image" src="images/button_minus.gif" value="-"
19478 onclick="switchState('source_id112');"
19479 class="control" /></div>
19482 <div id="source_id112" style="display:block">
19483 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19484 class="preWrapContainer">
19486 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
19487 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
19488 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
19489 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
19490 </span><span class="tokenElement"></xs:attribute></span></pre></td>
19497 <td class="firstColumn"><b>Schema location</b></td>
19498 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19503 <td class="rt_lineRight"></td>
19506 <td class="rt_cornerBottomLeft"></td>
19507 <td class="rt_lineBottom"></td>
19508 <td class="rt_cornerBottomRight"></td>
19510 </table><a id="id113"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id28" target="mainFrame"
19511 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19512 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS</a></b>/@id</span></div>
19515 <td class="rt_cornerTopLeft"></td>
19516 <td class="rt_lineTop"></td>
19517 <td class="rt_cornerTopRight"></td>
19520 <td class="rt_lineLeft"></td>
19521 <td class="rt_content">
19522 <table class="component">
19525 <td class="firstColumn"><b>Namespace</b></td>
19526 <td>No namespace</td>
19529 <td class="firstColumn">
19530 <div class="floatLeft"><b>Annotations</b></div>
19531 <div class="floatRight"><input id="button_annotations_id113" type="image" src="images/button_minus.gif"
19533 onclick="switchState('annotations_id113');"
19534 class="control" /></div>
19537 <div id="annotations_id113" style="display:block">
19538 <div class="annotation">
19539 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19540 class="preWrapContainer">
19542 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
19550 <td class="firstColumn"><b>Type</b></td>
19551 <td><b>xs:ID</b></td>
19554 <td class="firstColumn">
19555 <div class="floatLeft"><b>Properties</b></div>
19556 <div class="floatRight"><input id="button_properties_id113" type="image" src="images/button_minus.gif"
19558 onclick="switchState('properties_id113');"
19559 class="control" /></div>
19562 <div id="properties_id113" style="display:block">
19563 <table class="propertiesTable">
19565 <td class="firstColumn">use:
19568 <td><b>optional</b></td>
19575 <td class="firstColumn">
19576 <div class="floatLeft"><b>Used by</b></div>
19577 <div class="floatRight"><input id="button_usedBy_id113" type="image" src="images/button_minus.gif" value="-"
19578 onclick="switchState('usedBy_id113');"
19579 class="control" /></div>
19582 <div id="usedBy_id113" style="display:block">
19583 <table class="usedByTable">
19585 <td class="firstColumn">Element </td>
19586 <td><b><a href="vamsasDocument1.html#id28" target="mainFrame"
19587 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19588 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS</a></b></td>
19595 <td class="firstColumn">
19596 <div class="floatLeft"><b>Source</b></div>
19597 <div class="floatRight"><input id="button_source_id113" type="image" src="images/button_minus.gif" value="-"
19598 onclick="switchState('source_id113');"
19599 class="control" /></div>
19602 <div id="source_id113" style="display:block">
19603 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19604 class="preWrapContainer">
19606 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
19607 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
19608 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
19609 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
19610 </span><span class="tokenElement"></xs:attribute></span></pre></td>
19617 <td class="firstColumn"><b>Schema location</b></td>
19618 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19623 <td class="rt_lineRight"></td>
19626 <td class="rt_cornerBottomLeft"></td>
19627 <td class="rt_lineBottom"></td>
19628 <td class="rt_cornerBottomRight"></td>
19630 </table><a id="id114"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id28" target="mainFrame"
19631 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19632 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS</a></b>/@modifiable</span></div>
19635 <td class="rt_cornerTopLeft"></td>
19636 <td class="rt_lineTop"></td>
19637 <td class="rt_cornerTopRight"></td>
19640 <td class="rt_lineLeft"></td>
19641 <td class="rt_content">
19642 <table class="component">
19645 <td class="firstColumn"><b>Namespace</b></td>
19646 <td>No namespace</td>
19649 <td class="firstColumn"><b>Type</b></td>
19650 <td><b><a href="vamsasDocument1.html#id35" target="mainFrame"
19651 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19652 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:locks</a></b></td>
19655 <td class="firstColumn">
19656 <div class="floatLeft"><b>Properties</b></div>
19657 <div class="floatRight"><input id="button_properties_id114" type="image" src="images/button_minus.gif"
19659 onclick="switchState('properties_id114');"
19660 class="control" /></div>
19663 <div id="properties_id114" style="display:block">
19664 <table class="propertiesTable">
19666 <td class="firstColumn">use:
19669 <td><b>optional</b></td>
19676 <td class="firstColumn">
19677 <div class="floatLeft"><b>Used by</b></div>
19678 <div class="floatRight"><input id="button_usedBy_id114" type="image" src="images/button_minus.gif" value="-"
19679 onclick="switchState('usedBy_id114');"
19680 class="control" /></div>
19683 <div id="usedBy_id114" style="display:block">
19684 <table class="usedByTable">
19686 <td class="firstColumn">Element </td>
19687 <td><b><a href="vamsasDocument1.html#id28" target="mainFrame"
19688 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19689 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:VAMSAS</a></b></td>
19696 <td class="firstColumn">
19697 <div class="floatLeft"><b>Source</b></div>
19698 <div class="floatRight"><input id="button_source_id114" type="image" src="images/button_minus.gif" value="-"
19699 onclick="switchState('source_id114');"
19700 class="control" /></div>
19703 <div id="source_id114" style="display:block">
19704 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19705 class="preWrapContainer">
19707 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"modifiable"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"vamsas:locks"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">/></span></pre></td>
19714 <td class="firstColumn"><b>Schema location</b></td>
19715 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19720 <td class="rt_lineRight"></td>
19723 <td class="rt_cornerBottomLeft"></td>
19724 <td class="rt_lineBottom"></td>
19725 <td class="rt_cornerBottomRight"></td>
19727 </table><a id="id120"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id119" target="mainFrame"
19728 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19729 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:User</a></b>/<b><a href="vamsasDocument1.html#id115" target="mainFrame"
19730 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19731 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/@fullname</span></div>
19734 <td class="rt_cornerTopLeft"></td>
19735 <td class="rt_lineTop"></td>
19736 <td class="rt_cornerTopRight"></td>
19739 <td class="rt_lineLeft"></td>
19740 <td class="rt_content">
19741 <table class="component">
19744 <td class="firstColumn"><b>Namespace</b></td>
19745 <td>No namespace</td>
19748 <td class="firstColumn"><b>Type</b></td>
19749 <td><b>xs:string</b></td>
19752 <td class="firstColumn">
19753 <div class="floatLeft"><b>Properties</b></div>
19754 <div class="floatRight"><input id="button_properties_id120" type="image" src="images/button_minus.gif"
19756 onclick="switchState('properties_id120');"
19757 class="control" /></div>
19760 <div id="properties_id120" style="display:block">
19761 <table class="propertiesTable">
19763 <td class="firstColumn">use:
19766 <td><b>required</b></td>
19773 <td class="firstColumn">
19774 <div class="floatLeft"><b>Used by</b></div>
19775 <div class="floatRight"><input id="button_usedBy_id120" type="image" src="images/button_minus.gif" value="-"
19776 onclick="switchState('usedBy_id120');"
19777 class="control" /></div>
19780 <div id="usedBy_id120" style="display:block">
19781 <table class="usedByTable">
19783 <td class="firstColumn">Element </td>
19784 <td><b><a href="vamsasDocument1.html#id119" target="mainFrame"
19785 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19786 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData/vamsas:User</a></b></td>
19793 <td class="firstColumn">
19794 <div class="floatLeft"><b>Source</b></div>
19795 <div class="floatRight"><input id="button_source_id120" type="image" src="images/button_minus.gif" value="-"
19796 onclick="switchState('source_id120');"
19797 class="control" /></div>
19800 <div id="source_id120" style="display:block">
19801 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19802 class="preWrapContainer">
19804 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"fullname"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
19811 <td class="firstColumn"><b>Schema location</b></td>
19812 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19817 <td class="rt_lineRight"></td>
19820 <td class="rt_cornerBottomLeft"></td>
19821 <td class="rt_lineBottom"></td>
19822 <td class="rt_cornerBottomRight"></td>
19824 </table><a id="id121"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id119" target="mainFrame"
19825 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19826 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:User</a></b>/<b><a href="vamsasDocument1.html#id115" target="mainFrame"
19827 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19828 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/@organization</span></div>
19831 <td class="rt_cornerTopLeft"></td>
19832 <td class="rt_lineTop"></td>
19833 <td class="rt_cornerTopRight"></td>
19836 <td class="rt_lineLeft"></td>
19837 <td class="rt_content">
19838 <table class="component">
19841 <td class="firstColumn"><b>Namespace</b></td>
19842 <td>No namespace</td>
19845 <td class="firstColumn"><b>Type</b></td>
19846 <td><b>xs:string</b></td>
19849 <td class="firstColumn">
19850 <div class="floatLeft"><b>Properties</b></div>
19851 <div class="floatRight"><input id="button_properties_id121" type="image" src="images/button_minus.gif"
19853 onclick="switchState('properties_id121');"
19854 class="control" /></div>
19857 <div id="properties_id121" style="display:block">
19858 <table class="propertiesTable">
19860 <td class="firstColumn">use:
19863 <td><b>required</b></td>
19870 <td class="firstColumn">
19871 <div class="floatLeft"><b>Used by</b></div>
19872 <div class="floatRight"><input id="button_usedBy_id121" type="image" src="images/button_minus.gif" value="-"
19873 onclick="switchState('usedBy_id121');"
19874 class="control" /></div>
19877 <div id="usedBy_id121" style="display:block">
19878 <table class="usedByTable">
19880 <td class="firstColumn">Element </td>
19881 <td><b><a href="vamsasDocument1.html#id119" target="mainFrame"
19882 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19883 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData/vamsas:User</a></b></td>
19890 <td class="firstColumn">
19891 <div class="floatLeft"><b>Source</b></div>
19892 <div class="floatRight"><input id="button_source_id121" type="image" src="images/button_minus.gif" value="-"
19893 onclick="switchState('source_id121');"
19894 class="control" /></div>
19897 <div id="source_id121" style="display:block">
19898 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19899 class="preWrapContainer">
19901 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"organization"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
19908 <td class="firstColumn"><b>Schema location</b></td>
19909 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
19914 <td class="rt_lineRight"></td>
19917 <td class="rt_cornerBottomLeft"></td>
19918 <td class="rt_lineBottom"></td>
19919 <td class="rt_cornerBottomRight"></td>
19921 </table><a id="id124"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id123" target="mainFrame"
19922 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19923 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Instance</a></b>/<b><a href="vamsasDocument1.html#id115" target="mainFrame"
19924 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19925 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/@urn</span></div>
19928 <td class="rt_cornerTopLeft"></td>
19929 <td class="rt_lineTop"></td>
19930 <td class="rt_cornerTopRight"></td>
19933 <td class="rt_lineLeft"></td>
19934 <td class="rt_content">
19935 <table class="component">
19938 <td class="firstColumn"><b>Namespace</b></td>
19939 <td>No namespace</td>
19942 <td class="firstColumn"><b>Type</b></td>
19943 <td><b>xs:string</b></td>
19946 <td class="firstColumn">
19947 <div class="floatLeft"><b>Properties</b></div>
19948 <div class="floatRight"><input id="button_properties_id124" type="image" src="images/button_minus.gif"
19950 onclick="switchState('properties_id124');"
19951 class="control" /></div>
19954 <div id="properties_id124" style="display:block">
19955 <table class="propertiesTable">
19957 <td class="firstColumn">use:
19960 <td><b>required</b></td>
19967 <td class="firstColumn">
19968 <div class="floatLeft"><b>Used by</b></div>
19969 <div class="floatRight"><input id="button_usedBy_id124" type="image" src="images/button_minus.gif" value="-"
19970 onclick="switchState('usedBy_id124');"
19971 class="control" /></div>
19974 <div id="usedBy_id124" style="display:block">
19975 <table class="usedByTable">
19977 <td class="firstColumn">Element </td>
19978 <td><b><a href="vamsasDocument1.html#id123" target="mainFrame"
19979 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
19980 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData/vamsas:Instance</a></b></td>
19987 <td class="firstColumn">
19988 <div class="floatLeft"><b>Source</b></div>
19989 <div class="floatRight"><input id="button_source_id124" type="image" src="images/button_minus.gif" value="-"
19990 onclick="switchState('source_id124');"
19991 class="control" /></div>
19994 <div id="source_id124" style="display:block">
19995 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
19996 class="preWrapContainer">
19998 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"urn"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">/></span></pre></td>
20005 <td class="firstColumn"><b>Schema location</b></td>
20006 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20011 <td class="rt_lineRight"></td>
20014 <td class="rt_cornerBottomLeft"></td>
20015 <td class="rt_lineBottom"></td>
20016 <td class="rt_cornerBottomRight"></td>
20018 </table><a id="id125"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id115" target="mainFrame"
20019 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20020 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/@version</span></div>
20023 <td class="rt_cornerTopLeft"></td>
20024 <td class="rt_lineTop"></td>
20025 <td class="rt_cornerTopRight"></td>
20028 <td class="rt_lineLeft"></td>
20029 <td class="rt_content">
20030 <table class="component">
20033 <td class="firstColumn"><b>Namespace</b></td>
20034 <td>No namespace</td>
20037 <td class="firstColumn">
20038 <div class="floatLeft"><b>Annotations</b></div>
20039 <div class="floatRight"><input id="button_annotations_id125" type="image" src="images/button_minus.gif"
20041 onclick="switchState('annotations_id125');"
20042 class="control" /></div>
20045 <div id="annotations_id125" style="display:block">
20046 <div class="annotation">
20047 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20048 class="preWrapContainer">
20050 <td width="100%"><pre><span class="tokenText">Version string describing the application specific</span><span class="tokenIndent">
20051 </span><span class="tokenText">data storage version used</span></pre></td>
20059 <td class="firstColumn"><b>Type</b></td>
20060 <td><b>xs:string</b></td>
20063 <td class="firstColumn">
20064 <div class="floatLeft"><b>Properties</b></div>
20065 <div class="floatRight"><input id="button_properties_id125" type="image" src="images/button_minus.gif"
20067 onclick="switchState('properties_id125');"
20068 class="control" /></div>
20071 <div id="properties_id125" style="display:block">
20072 <table class="propertiesTable">
20074 <td class="firstColumn">use:
20077 <td><b>required</b></td>
20084 <td class="firstColumn">
20085 <div class="floatLeft"><b>Used by</b></div>
20086 <div class="floatRight"><input id="button_usedBy_id125" type="image" src="images/button_minus.gif" value="-"
20087 onclick="switchState('usedBy_id125');"
20088 class="control" /></div>
20091 <div id="usedBy_id125" style="display:block">
20092 <table class="usedByTable">
20094 <td class="firstColumn">Element </td>
20095 <td><b><a href="vamsasDocument1.html#id115" target="mainFrame"
20096 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20097 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b></td>
20104 <td class="firstColumn">
20105 <div class="floatLeft"><b>Source</b></div>
20106 <div class="floatRight"><input id="button_source_id125" type="image" src="images/button_minus.gif" value="-"
20107 onclick="switchState('source_id125');"
20108 class="control" /></div>
20111 <div id="source_id125" style="display:block">
20112 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20113 class="preWrapContainer">
20115 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"version"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
20116 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
20117 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Version string describing the application specific data storage version used</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
20118 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
20119 </span><span class="tokenElement"></xs:attribute></span></pre></td>
20126 <td class="firstColumn"><b>Schema location</b></td>
20127 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20132 <td class="rt_lineRight"></td>
20135 <td class="rt_cornerBottomLeft"></td>
20136 <td class="rt_lineBottom"></td>
20137 <td class="rt_cornerBottomRight"></td>
20139 </table><a id="id126"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id115" target="mainFrame"
20140 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20141 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b>/@name</span></div>
20144 <td class="rt_cornerTopLeft"></td>
20145 <td class="rt_lineTop"></td>
20146 <td class="rt_cornerTopRight"></td>
20149 <td class="rt_lineLeft"></td>
20150 <td class="rt_content">
20151 <table class="component">
20154 <td class="firstColumn"><b>Namespace</b></td>
20155 <td>No namespace</td>
20158 <td class="firstColumn">
20159 <div class="floatLeft"><b>Annotations</b></div>
20160 <div class="floatRight"><input id="button_annotations_id126" type="image" src="images/button_minus.gif"
20162 onclick="switchState('annotations_id126');"
20163 class="control" /></div>
20166 <div id="annotations_id126" style="display:block">
20167 <div class="annotation">
20168 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20169 class="preWrapContainer">
20171 <td width="100%"><pre><span class="tokenText">Canonical name of application</span></pre></td>
20179 <td class="firstColumn"><b>Type</b></td>
20180 <td><b>xs:string</b></td>
20183 <td class="firstColumn">
20184 <div class="floatLeft"><b>Properties</b></div>
20185 <div class="floatRight"><input id="button_properties_id126" type="image" src="images/button_minus.gif"
20187 onclick="switchState('properties_id126');"
20188 class="control" /></div>
20191 <div id="properties_id126" style="display:block">
20192 <table class="propertiesTable">
20194 <td class="firstColumn">use:
20197 <td><b>required</b></td>
20204 <td class="firstColumn">
20205 <div class="floatLeft"><b>Used by</b></div>
20206 <div class="floatRight"><input id="button_usedBy_id126" type="image" src="images/button_minus.gif" value="-"
20207 onclick="switchState('usedBy_id126');"
20208 class="control" /></div>
20211 <div id="usedBy_id126" style="display:block">
20212 <table class="usedByTable">
20214 <td class="firstColumn">Element </td>
20215 <td><b><a href="vamsasDocument1.html#id115" target="mainFrame"
20216 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20217 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:ApplicationData</a></b></td>
20224 <td class="firstColumn">
20225 <div class="floatLeft"><b>Source</b></div>
20226 <div class="floatRight"><input id="button_source_id126" type="image" src="images/button_minus.gif" value="-"
20227 onclick="switchState('source_id126');"
20228 class="control" /></div>
20231 <div id="source_id126" style="display:block">
20232 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20233 class="preWrapContainer">
20235 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"name"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
20236 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
20237 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Canonical name of application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
20238 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
20239 </span><span class="tokenElement"></xs:attribute></span></pre></td>
20246 <td class="firstColumn"><b>Schema location</b></td>
20247 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20252 <td class="rt_lineRight"></td>
20255 <td class="rt_cornerBottomLeft"></td>
20256 <td class="rt_lineBottom"></td>
20257 <td class="rt_cornerBottomRight"></td>
20259 </table><a id="id128"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20260 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20261 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b>/@compressed</span></div>
20264 <td class="rt_cornerTopLeft"></td>
20265 <td class="rt_lineTop"></td>
20266 <td class="rt_cornerTopRight"></td>
20269 <td class="rt_lineLeft"></td>
20270 <td class="rt_content">
20271 <table class="component">
20274 <td class="firstColumn"><b>Namespace</b></td>
20275 <td>No namespace</td>
20278 <td class="firstColumn">
20279 <div class="floatLeft"><b>Annotations</b></div>
20280 <div class="floatRight"><input id="button_annotations_id128" type="image" src="images/button_minus.gif"
20282 onclick="switchState('annotations_id128');"
20283 class="control" /></div>
20286 <div id="annotations_id128" style="display:block">
20287 <div class="annotation">
20288 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20289 class="preWrapContainer">
20291 <td width="100%"><pre><span class="tokenText">true implies data will be decompresses with Zip</span><span class="tokenIndent">
20292 </span><span class="tokenText">before presenting to application</span></pre></td>
20300 <td class="firstColumn"><b>Type</b></td>
20301 <td><b>xs:boolean</b></td>
20304 <td class="firstColumn">
20305 <div class="floatLeft"><b>Properties</b></div>
20306 <div class="floatRight"><input id="button_properties_id128" type="image" src="images/button_minus.gif"
20308 onclick="switchState('properties_id128');"
20309 class="control" /></div>
20312 <div id="properties_id128" style="display:block">
20313 <table class="propertiesTable">
20315 <td class="firstColumn">use:
20318 <td><b>optional</b></td>
20321 <td class="firstColumn">default:
20324 <td><b>false</b></td>
20331 <td class="firstColumn">
20332 <div class="floatLeft"><b>Used by</b></div>
20333 <div class="floatRight"><input id="button_usedBy_id128" type="image" src="images/button_minus.gif" value="-"
20334 onclick="switchState('usedBy_id128');"
20335 class="control" /></div>
20338 <div id="usedBy_id128" style="display:block">
20339 <table class="usedByTable">
20341 <td class="firstColumn">Element </td>
20342 <td><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20343 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20344 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b></td>
20351 <td class="firstColumn">
20352 <div class="floatLeft"><b>Source</b></div>
20353 <div class="floatRight"><input id="button_source_id128" type="image" src="images/button_minus.gif" value="-"
20354 onclick="switchState('source_id128');"
20355 class="control" /></div>
20358 <div id="source_id128" style="display:block">
20359 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20360 class="preWrapContainer">
20362 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"compressed"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:boolean"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenAttrName"> default=</span><span class="tokenAttrValue">"false"</span><span class="tokenElement">></span><span class="tokenIndent">
20363 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
20364 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">true implies data will be decompresses with Zip before presenting to application</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
20365 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
20366 </span><span class="tokenElement"></xs:attribute></span></pre></td>
20373 <td class="firstColumn"><b>Schema location</b></td>
20374 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20379 <td class="rt_lineRight"></td>
20382 <td class="rt_cornerBottomLeft"></td>
20383 <td class="rt_lineBottom"></td>
20384 <td class="rt_cornerBottomRight"></td>
20386 </table><a id="id129"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20387 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20388 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b>/@type</span></div>
20391 <td class="rt_cornerTopLeft"></td>
20392 <td class="rt_lineTop"></td>
20393 <td class="rt_cornerTopRight"></td>
20396 <td class="rt_lineLeft"></td>
20397 <td class="rt_content">
20398 <table class="component">
20401 <td class="firstColumn"><b>Namespace</b></td>
20402 <td>No namespace</td>
20405 <td class="firstColumn">
20406 <div class="floatLeft"><b>Annotations</b></div>
20407 <div class="floatRight"><input id="button_annotations_id129" type="image" src="images/button_minus.gif"
20409 onclick="switchState('annotations_id129');"
20410 class="control" /></div>
20413 <div id="annotations_id129" style="display:block">
20414 <div class="annotation">
20415 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20416 class="preWrapContainer">
20418 <td width="100%"><pre><span class="tokenText">Type of arbitrary data - TODO: decide format - use</span><span class="tokenIndent">
20419 </span><span class="tokenText">(extended) MIME types ?</span></pre></td>
20427 <td class="firstColumn"><b>Type</b></td>
20428 <td><b>xs:string</b></td>
20431 <td class="firstColumn">
20432 <div class="floatLeft"><b>Properties</b></div>
20433 <div class="floatRight"><input id="button_properties_id129" type="image" src="images/button_minus.gif"
20435 onclick="switchState('properties_id129');"
20436 class="control" /></div>
20439 <div id="properties_id129" style="display:block">
20440 <table class="propertiesTable">
20442 <td class="firstColumn">use:
20445 <td><b>required</b></td>
20452 <td class="firstColumn">
20453 <div class="floatLeft"><b>Used by</b></div>
20454 <div class="floatRight"><input id="button_usedBy_id129" type="image" src="images/button_minus.gif" value="-"
20455 onclick="switchState('usedBy_id129');"
20456 class="control" /></div>
20459 <div id="usedBy_id129" style="display:block">
20460 <table class="usedByTable">
20462 <td class="firstColumn">Element </td>
20463 <td><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20464 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20465 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b></td>
20472 <td class="firstColumn">
20473 <div class="floatLeft"><b>Source</b></div>
20474 <div class="floatRight"><input id="button_source_id129" type="image" src="images/button_minus.gif" value="-"
20475 onclick="switchState('source_id129');"
20476 class="control" /></div>
20479 <div id="source_id129" style="display:block">
20480 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20481 class="preWrapContainer">
20483 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"type"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:string"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
20484 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
20485 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Type of arbitrary data - TODO: decide format - use (extended) MIME types ?</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
20486 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
20487 </span><span class="tokenElement"></xs:attribute></span></pre></td>
20494 <td class="firstColumn"><b>Schema location</b></td>
20495 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20500 <td class="rt_lineRight"></td>
20503 <td class="rt_cornerBottomLeft"></td>
20504 <td class="rt_lineBottom"></td>
20505 <td class="rt_cornerBottomRight"></td>
20507 </table><a id="id130"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20508 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20509 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b>/@objectref</span></div>
20512 <td class="rt_cornerTopLeft"></td>
20513 <td class="rt_lineTop"></td>
20514 <td class="rt_cornerTopRight"></td>
20517 <td class="rt_lineLeft"></td>
20518 <td class="rt_content">
20519 <table class="component">
20522 <td class="firstColumn"><b>Namespace</b></td>
20523 <td>No namespace</td>
20526 <td class="firstColumn">
20527 <div class="floatLeft"><b>Annotations</b></div>
20528 <div class="floatRight"><input id="button_annotations_id130" type="image" src="images/button_minus.gif"
20530 onclick="switchState('annotations_id130');"
20531 class="control" /></div>
20534 <div id="annotations_id130" style="display:block">
20535 <div class="annotation">
20536 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20537 class="preWrapContainer">
20539 <td width="100%"><pre><span class="tokenText">Object the arbitrary data is associated with</span></pre></td>
20547 <td class="firstColumn"><b>Type</b></td>
20548 <td><b>xs:IDREF</b></td>
20551 <td class="firstColumn">
20552 <div class="floatLeft"><b>Properties</b></div>
20553 <div class="floatRight"><input id="button_properties_id130" type="image" src="images/button_minus.gif"
20555 onclick="switchState('properties_id130');"
20556 class="control" /></div>
20559 <div id="properties_id130" style="display:block">
20560 <table class="propertiesTable">
20562 <td class="firstColumn">use:
20565 <td><b>required</b></td>
20572 <td class="firstColumn">
20573 <div class="floatLeft"><b>Used by</b></div>
20574 <div class="floatRight"><input id="button_usedBy_id130" type="image" src="images/button_minus.gif" value="-"
20575 onclick="switchState('usedBy_id130');"
20576 class="control" /></div>
20579 <div id="usedBy_id130" style="display:block">
20580 <table class="usedByTable">
20582 <td class="firstColumn">Element </td>
20583 <td><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20584 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20585 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b></td>
20592 <td class="firstColumn">
20593 <div class="floatLeft"><b>Source</b></div>
20594 <div class="floatRight"><input id="button_source_id130" type="image" src="images/button_minus.gif" value="-"
20595 onclick="switchState('source_id130');"
20596 class="control" /></div>
20599 <div id="source_id130" style="display:block">
20600 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20601 class="preWrapContainer">
20603 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"objectref"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:IDREF"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"required"</span><span class="tokenElement">></span><span class="tokenIndent">
20604 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
20605 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Object the arbitrary data is associated with</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
20606 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
20607 </span><span class="tokenElement"></xs:attribute></span></pre></td>
20614 <td class="firstColumn"><b>Schema location</b></td>
20615 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20620 <td class="rt_lineRight"></td>
20623 <td class="rt_cornerBottomLeft"></td>
20624 <td class="rt_lineBottom"></td>
20625 <td class="rt_cornerBottomRight"></td>
20627 </table><a id="id131"></a><div class="componentTitle">Attribute <span class="qname"><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20628 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20629 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b>/@id</span></div>
20632 <td class="rt_cornerTopLeft"></td>
20633 <td class="rt_lineTop"></td>
20634 <td class="rt_cornerTopRight"></td>
20637 <td class="rt_lineLeft"></td>
20638 <td class="rt_content">
20639 <table class="component">
20642 <td class="firstColumn"><b>Namespace</b></td>
20643 <td>No namespace</td>
20646 <td class="firstColumn">
20647 <div class="floatLeft"><b>Annotations</b></div>
20648 <div class="floatRight"><input id="button_annotations_id131" type="image" src="images/button_minus.gif"
20650 onclick="switchState('annotations_id131');"
20651 class="control" /></div>
20654 <div id="annotations_id131" style="display:block">
20655 <div class="annotation">
20656 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20657 class="preWrapContainer">
20659 <td width="100%"><pre><span class="tokenText">Primary Key for vamsas object referencing</span></pre></td>
20667 <td class="firstColumn"><b>Type</b></td>
20668 <td><b>xs:ID</b></td>
20671 <td class="firstColumn">
20672 <div class="floatLeft"><b>Properties</b></div>
20673 <div class="floatRight"><input id="button_properties_id131" type="image" src="images/button_minus.gif"
20675 onclick="switchState('properties_id131');"
20676 class="control" /></div>
20679 <div id="properties_id131" style="display:block">
20680 <table class="propertiesTable">
20682 <td class="firstColumn">use:
20685 <td><b>optional</b></td>
20692 <td class="firstColumn">
20693 <div class="floatLeft"><b>Used by</b></div>
20694 <div class="floatRight"><input id="button_usedBy_id131" type="image" src="images/button_minus.gif" value="-"
20695 onclick="switchState('usedBy_id131');"
20696 class="control" /></div>
20699 <div id="usedBy_id131" style="display:block">
20700 <table class="usedByTable">
20702 <td class="firstColumn">Element </td>
20703 <td><b><a href="vamsasDocument1.html#id127" target="mainFrame"
20704 title="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes"
20705 onclick="updatePageTitle('Schema documentation for vamsas.xsd')">vamsas:Attachment</a></b></td>
20712 <td class="firstColumn">
20713 <div class="floatLeft"><b>Source</b></div>
20714 <div class="floatRight"><input id="button_source_id131" type="image" src="images/button_minus.gif" value="-"
20715 onclick="switchState('source_id131');"
20716 class="control" /></div>
20719 <div id="source_id131" style="display:block">
20720 <table style="table-layout:fixed;white-space:pre-wrap;white-space:-moz-pre-wrap;white-space:-pre-wrap;white-space: -o-pre-wrap;word-wrap: break-word;_white-space:pre;"
20721 class="preWrapContainer">
20723 <td width="100%"><pre><span class="tokenElement"><xs:attribute</span><span class="tokenAttrName"> name=</span><span class="tokenAttrValue">"id"</span><span class="tokenAttrName"> type=</span><span class="tokenAttrValue">"xs:ID"</span><span class="tokenAttrName"> use=</span><span class="tokenAttrValue">"optional"</span><span class="tokenElement">></span><span class="tokenIndent">
20724 </span><span class="tokenElement"><xs:annotation</span><span class="tokenElement">></span><span class="tokenIndent">
20725 </span><span class="tokenElement"><xs:documentation</span><span class="tokenElement">></span><span class="tokenText">Primary Key for vamsas object referencing</span><span class="tokenElement"></xs:documentation></span><span class="tokenIndent">
20726 </span><span class="tokenElement"></xs:annotation></span><span class="tokenIndent">
20727 </span><span class="tokenElement"></xs:attribute></span></pre></td>
20734 <td class="firstColumn"><b>Schema location</b></td>
20735 <td>file:/C:/Documents and Settings/JimP/workspace-3.4/VamsasClient/schemas/vamsas.xsd</td>
20740 <td class="rt_lineRight"></td>
20743 <td class="rt_cornerBottomLeft"></td>
20744 <td class="rt_lineBottom"></td>
20745 <td class="rt_cornerBottomRight"></td>
20748 <div class="footer">
20750 <div align="center">XML Schema documentation generated by <a href="http://www.oxygenxml.com" target="_parent"><span class="oXygenLogo"><span class="redX"><</span>o<span class="redX">X</span>ygen<span class="redX">/></span></span></a><sup>®</sup> XML Editor.
20752 </div><script type="text/javascript">
20754 // The namespace is the selected option in the TOC combo.
20756 // The corresponding div is already visible conf. to its style attr.
20758 var selectToc = getElementObject('selectTOC');
20759 if(selectToc != null){
20760 // It can be null when having chunking, the combo of the TOC is in another frame.
20761 selectToc.selectedIndex = 1;
20765 // Floats the toolbar.
20766 var globalControls = getElementObject("global_controls");
20768 if(globalControls != null){
20769 var browser=navigator.appName;
20770 var version = parseFloat(navigator.appVersion.split('MSIE')[1]);
20773 if ((browser=="Microsoft Internet Explorer") && (version < 7)){
20777 //alert (IE6 + " |V| " + version);
20780 // On IE 6 the 'fixed' property is not supported. We must use javascript.
20781 globalControls.style.position='absolute';
20782 // The global controls will do not exist in the TOC frame, when chunking.
20783 findAndFloat("global_controls", 225, 30);
20785 globalControls.style.position='fixed';
20788 globalControls.style.right='0';
20790 --></script></body>