dundee-conf/settings/MafftLimits.xml

   1 <?xml version="1.0" encoding="US-ASCII" standalone="yes"?>\r
   2 <limits>\r
   3  <runnerClassName>compbio.runner.mafft.Mafft</runnerClassName>\r
   4         <limit isDefault="true">\r
   5                 <seqNumber>1000</seqNumber>\r
   6                 <seqLength>1000</seqLength>\r
   7         </limit>\r
   8         <limit isDefault="false">\r
   9                 <preset>L-INS-i (Accuracy-oriented)</preset>\r
  10                 <seqNumber>500</seqNumber>\r
  11                 <seqLength>1000</seqLength>\r
  12         </limit>\r
  13         <limit isDefault="false">\r
  14                 <preset>G-INS-i (Accuracy-oriented)</preset>\r
  15                 <seqNumber>500</seqNumber>\r
  16                 <seqLength>1000</seqLength>\r
  17         </limit>\r
  18         <limit isDefault="false">\r
  19                 <preset>E-INS-i (Accuracy-oriented)</preset>\r
  20                 <seqNumber>500</seqNumber>\r
  21                 <seqLength>1000</seqLength>\r
  22         </limit>\r
  23         <limit isDefault="false">\r
  24                 <preset>FFT-NS-i (Speed oriented)</preset>\r
  25                 <seqNumber>2000</seqNumber>\r
  26                 <seqLength>1000</seqLength>\r
  27         </limit>\r
  28         <limit isDefault="false">\r
  29                 <preset>FFT-NS-1 (Speed oriented)</preset>\r
  30                 <seqNumber>2000</seqNumber>\r
  31                 <seqLength>1000</seqLength>\r
  32         </limit>\r
  33         <limit isDefault="false">\r
  34                 <preset>NW-NS-PartTree-1 (Speed oriented)</preset>\r
  35                 <seqNumber>2000</seqNumber>\r
  36                 <seqLength>1000</seqLength>\r
  37         </limit>\r
  38         <limit isDefault="false">\r
  39                 <preset># LocalEngineExecutionLimit #</preset>\r
  40                 <seqNumber>20</seqNumber>\r
  41                 <seqLength>500</seqLength>\r
  42         </limit>\r
  43 </limits>\r