1 <!DOCTYPE html SYSTEM "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
3 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
4 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 <html xmlns="http://www.w3.org/1999/xhtml">
21 Embedded viewing of Alignments
24 <h1>Embedded viewing of Alignments</h1>
25 <p>The alignment below was generated from the following files:
27 <li><a href="plantfdx.fa">plantfdx.fa</a> - Alignment file in
29 <li><a href="plantfdx.features">plantfdx.features</a> - Jalview
30 Format Sequence Features file</li>
31 <li><a href="plantfdx.annotations">plantfdx.annotations</a> -
32 Jalview Alignment Annotations File</li>
34 <applet code="jalview.bin.JalviewLite"
35 width="756" height="560" archive="jalviewApplet.jar">
36 <param name="file" value="plantfdx.fa">
37 <param name="annotations" value="plantfdx.annotations">
38 <param name="features" value="plantfdx.features">
39 <param name="embedded" value="true">
40 <param name="userDefinedColour"
41 value="C=yellow; R,K,H=FF5555; D,E=5555FF">
42 <param name="showFullId" value="false">
43 <param name="RGB" value="F2F2FF">
44 <param name="linkLabel_1" value="SRS">
45 <param name="linkUrl_1"
46 value="http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz?-e+[uniprot-all:$SEQUENCE_ID$]+-vn+2">
47 <param name="linkLabel_2" value="Uniprot">
48 <param name="linkUrl_2"
49 value="http://us.expasy.org/cgi-bin/niceprot.pl?$SEQUENCE_ID$">
50 <param name="APPLICATION_URL"
51 value="http://www.jalview.org/services/launchApp">