1 package compbio.engine;
3 import java.util.ArrayList;
6 import compbio.data.sequence.FastaSequence;
8 public class JpredJob extends Job {
9 private String protein;
11 private List<FastaSequence> predictions;
12 private List<FastaSequence> alignment;
18 public JpredJob(String jobid, String date1, String date2) {
19 super(jobid, date1, date2);
20 this.protein = protein;
21 predictions = new ArrayList<FastaSequence>();
22 alignment = new ArrayList<FastaSequence>();
26 public JpredJob(String jobid, String date1, String date2, List<FastaSequence> alignment, List<FastaSequence> predictions) {
27 super(jobid, date1, date2);
28 this.protein = protein;
29 this.alignment = alignment;
30 this.predictions = predictions;
33 public void setProtein(String protein) {
34 this.protein = protein;
37 public String getProtein() {
41 public void setLog(String log) {
45 public String getLog() {
49 public void setAlignment(List<FastaSequence> al) {
53 public List<FastaSequence> getAlignment() {
57 public void setPredictions(List<FastaSequence> pr) {
58 this.predictions = pr;
61 public List<FastaSequence> getPredictions() {