1 package compbio.engine;
3 import java.util.ArrayList;
6 import compbio.data.sequence.FastaSequence;
8 public class JpredJob extends Job {
9 private String protein;
11 private List<FastaSequence> predictions;
12 private List<FastaSequence> alignment;
18 public JpredJob(String jobid, String date1, String date2) {
19 super(jobid, date1, date2);
20 predictions = new ArrayList<FastaSequence>();
21 alignment = new ArrayList<FastaSequence>();
25 public JpredJob(String jobid, String date1, String date2, List<FastaSequence> alignment, List<FastaSequence> predictions) {
26 super(jobid, date1, date2);
27 this.alignment = alignment;
28 this.predictions = predictions;
31 public void setProtein(String protein) {
32 this.protein = protein;
35 public String getProtein() {
39 public void setLog(String log) {
43 public String getLog() {
47 public void setAlignment(List<FastaSequence> al) {
51 public List<FastaSequence> getAlignment() {
55 public void setPredictions(List<FastaSequence> pr) {
56 this.predictions = pr;
59 public List<FastaSequence> getPredictions() {