1 /* Copyright (c) 2009 Peter Troshin
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3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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19 package compbio.engine.client;
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21 import java.io.IOException;
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22 import java.io.InputStream;
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23 import java.util.Map;
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25 import compbio.metadata.JobExecutionException;
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26 import compbio.metadata.JobSubmissionException;
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27 import compbio.metadata.ResultNotAvailableException;
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29 public interface ConfiguredExecutable<T> extends Executable<T>,
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30 PipedExecutable<T> {
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32 Map<String, String> getEnvironment();
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36 String getCommand(ExecProvider provider) throws JobSubmissionException;
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38 ExecProvider getSupportedRuntimes();
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40 String getWorkDirectory();
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42 void setWorkDirectory(String workDirectory);
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44 <V> V getResults() throws ResultNotAvailableException;
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46 Executable<T> getExecutable();
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48 CommandBuilder<T> getParameters();
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50 boolean saveRunConfiguration() throws IOException;
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52 ConfiguredExecutable<?> loadRunConfiguration(InputStream input)
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55 public ExecProvider getExecProvider();
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