1 /* Copyright (c) 2009 Peter Troshin
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3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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19 package compbio.engine.local;
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21 import java.util.concurrent.ExecutionException;
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22 import java.util.concurrent.Future;
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24 import org.apache.log4j.Logger;
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26 import compbio.engine.AsyncExecutor;
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27 import compbio.engine.Configurator;
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28 import compbio.engine.SubmissionManager;
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29 import compbio.engine.client.ConfiguredExecutable;
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30 import compbio.engine.client.Util;
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31 import compbio.metadata.JobStatus;
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32 import compbio.metadata.JobSubmissionException;
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33 import compbio.metadata.ResultNotAvailableException;
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35 public final class AsyncLocalRunner implements AsyncExecutor {
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37 private static final Logger log = Logger.getLogger(AsyncLocalRunner.class);
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40 public String getWorkDirectory(String jobId) {
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41 return Configurator.getWorkDirectory(jobId);
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45 public boolean cancelJob(String jobId) {
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46 Future<ConfiguredExecutable<?>> future = SubmissionManager
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48 // The job has already finished or cancelled.
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49 if (future == null) {
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51 .debug("Did not find future for local job "
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53 + " will not cancel it. Perhaps it has finished or cancelled already.");
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56 LocalEngineUtil.cancelJob(future, getWorkDirectory(jobId));
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57 return future.cancel(true);
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61 public JobStatus getJobStatus(String jobId) {
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62 Future<ConfiguredExecutable<?>> future = SubmissionManager
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64 if (future == null) {
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65 return LocalEngineUtil.getRecordedJobStatus(jobId);
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67 return LocalEngineUtil.getJobStatus(future);
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71 public String submitJob(ConfiguredExecutable<?> executable)
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72 throws JobSubmissionException {
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73 if (executable == null) {
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74 throw new NullPointerException("Executable expected!");
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76 LocalRunner lrunner = new LocalRunner(executable);
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77 lrunner.executeJob();
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78 Future<ConfiguredExecutable<?>> future = lrunner.getFuture();
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80 if (future == null) {
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81 throw new RuntimeException("Future is NULL for executable "
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84 SubmissionManager.addTask(executable, future);
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85 return executable.getTaskId();
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94 public boolean cleanup(String jobId) {
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95 Future<ConfiguredExecutable<?>> future = SubmissionManager
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97 ConfiguredExecutable<?> cexec = null;
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99 cexec = future.get();
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100 } catch (InterruptedException e) {
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101 log.error("Cannot clean up as calculation was not completed!"
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102 + e.getLocalizedMessage());
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103 } catch (ExecutionException e) {
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104 log.error("Cannot clean up due to ExecutionException "
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105 + e.getLocalizedMessage());
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107 if (cexec == null) {
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110 return LocalEngineUtil.cleanup(cexec);
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114 public ConfiguredExecutable<?> getResults(String taskId)
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115 throws ResultNotAvailableException {
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116 if (!Util.isValidJobId(taskId)) {
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117 // TODO should I be throwing something else?
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118 throw new IllegalArgumentException(taskId);
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120 Future<ConfiguredExecutable<?>> futureExec = SubmissionManager
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122 if (futureExec == null) {
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123 // If task was not find in the list of jobs, than it must have been
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124 // collected already
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125 // Resurrect the job to find out there the output is
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126 ConfiguredExecutable<?> exec = compbio.engine.client.Util
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127 .loadExecutable(taskId);
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130 return LocalEngineUtil.getResults(futureExec, taskId);
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