1 /* -*- mode: c; tab-width: 4; c-basic-offset: 4; indent-tabs-mode: nil -*- */
3 /*********************************************************************
4 * Clustal Omega - Multiple sequence alignment
6 * Copyright (C) 2010 University College Dublin
8 * Clustal-Omega is free software; you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License as
10 * published by the Free Software Foundation; either version 2 of the
11 * License, or (at your option) any later version.
13 * This file is part of Clustal-Omega.
15 ********************************************************************/
18 * RCS $Id: hhalign.h 241 2011-05-04 14:37:17Z fabian $
23 hhalign(char **ppcFirstProf, int iFirstCnt, double *pdWeightsL,
24 char **ppcSecndProf, int iSecndCnt, double *pdWeightsR,
25 double *dScore_p, hmm_light *prHMM,
26 char *pcPrealigned1, char *pcRepresent1,
27 char *pcPrealigned2, char *pcRepresent2,
28 hhalign_para rHhalignPara,
30 char zcAux[], char zcError[]);