1 /*********************************************************************
2 * Clustal Omega - Multiple sequence alignment
4 * Copyright (C) 2010 University College Dublin
6 * Clustal-Omega is free software; you can redistribute it and/or
7 * modify it under the terms of the GNU General Public License as
8 * published by the Free Software Foundation; either version 2 of the
9 * License, or (at your option) any later version.
11 * This file is part of Clustal-Omega.
13 ********************************************************************/
16 * RCS $Id: hhalign_wrapper.h 241 2011-05-04 14:37:17Z fabian $
21 HHalignWrapper(mseq_t *mseq, int *piOrderLR,
22 double *pdSeqWeights, int iNodeCount,
23 hmm_light *prHMMList, int iHMMCount,
24 int iProfProfSeparator, hhalign_para rHhalignPara);