1 /*********************************************************************
2 * Clustal Omega - Multiple sequence alignment
4 * Copyright (C) 2010 University College Dublin
6 * Clustal-Omega is free software; you can redistribute it and/or
7 * modify it under the terms of the GNU General Public License as
8 * published by the Free Software Foundation; either version 2 of the
9 * License, or (at your option) any later version.
11 * This file is part of Clustal-Omega.
13 ********************************************************************/
16 * RCS $Id: hhfunc.h 143 2010-10-14 13:11:14Z andreas $
20 int readHMMWrapper(hmm_light *rHMM_p,
22 void FreeHMMstruct(hmm_light *prHMM);
23 int AlnToHMM2(hmm_light *rHMM_p,
24 char **ppcSeq, int iN);
25 int HHMake_Wrapper(char *tmp_aln, char *hmm_out);