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5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->
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10 <META NAME="date" CONTENT="2011-12-07">
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41 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Package</FONT> </TD>
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42 <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT> </TD>
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81 <A HREF="index-1.html">A</A> <A HREF="index-2.html">B</A> <A HREF="index-3.html">C</A> <A HREF="index-4.html">D</A> <A HREF="index-5.html">E</A> <A HREF="index-6.html">F</A> <A HREF="index-7.html">G</A> <A HREF="index-8.html">H</A> <A HREF="index-9.html">I</A> <A HREF="index-10.html">J</A> <A HREF="index-11.html">K</A> <A HREF="index-12.html">L</A> <A HREF="index-13.html">M</A> <A HREF="index-14.html">N</A> <A HREF="index-15.html">O</A> <A HREF="index-16.html">P</A> <A HREF="index-17.html">R</A> <A HREF="index-18.html">S</A> <A HREF="index-19.html">T</A> <A HREF="index-20.html">U</A> <A HREF="index-21.html">V</A> <A HREF="index-22.html">W</A> <A HREF="index-23.html">_</A> <HR>
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82 <A NAME="_V_"><!-- --></A><H2>
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85 <DT><A HREF="../compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE"><B>V2_SERVICE_NAMESPACE</B></A> -
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86 Static variable in interface compbio.data.msa.<A HREF="../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A>
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88 <DT><A HREF="../compbio/engine/conf/RunnerConfigMarshaller.html#validate(javax.xml.validation.Validator, java.lang.String)"><B>validate(Validator, String)</B></A> -
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89 Static method in class compbio.engine.conf.<A HREF="../compbio/engine/conf/RunnerConfigMarshaller.html" title="class in compbio.engine.conf">RunnerConfigMarshaller</A>
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91 <DT><A HREF="../compbio/metadata/LimitsManager.html#validate(compbio.metadata.PresetManager)"><B>validate(PresetManager<T>)</B></A> -
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92 Method in class compbio.metadata.<A HREF="../compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>
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94 <DT><A HREF="../compbio/metadata/PresetManager.html#validate(compbio.metadata.RunnerConfig)"><B>validate(RunnerConfig<T>)</B></A> -
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95 Method in class compbio.metadata.<A HREF="../compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>
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96 <DD>Checks whether preset option and parameter are defined in RunnerConfig
98 <DT><A HREF="../compbio/metadata/RunnerConfig.html#validate()"><B>validate()</B></A> -
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99 Method in class compbio.metadata.<A HREF="../compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>
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100 <DD>Validate the value of the argument.
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101 <DT><A HREF="../compbio/ws/server/WSUtil.html#validateAAConInput(java.util.List)"><B>validateAAConInput(List<FastaSequence>)</B></A> -
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102 Static method in class compbio.ws.server.<A HREF="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>
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104 <DT><A HREF="../compbio/engine/client/PathValidator.html#validateDirectory(java.lang.String)"><B>validateDirectory(String)</B></A> -
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105 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>
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107 <DT><A HREF="../compbio/engine/client/PathValidator.html#validateExecutable(java.lang.String)"><B>validateExecutable(String)</B></A> -
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108 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>
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110 <DT><A HREF="../compbio/ws/server/WSUtil.html#validateFastaInput(java.util.List)"><B>validateFastaInput(List<FastaSequence>)</B></A> -
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111 Static method in class compbio.ws.server.<A HREF="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>
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113 <DT><A HREF="../compbio/ws/server/WSUtil.html#validateJobId(java.lang.String)"><B>validateJobId(String)</B></A> -
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114 Static method in class compbio.ws.server.<A HREF="../compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>
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116 <DT><A HREF="../compbio/engine/client/PathValidator.html#validatePathNames(java.util.List, java.lang.String)"><B>validatePathNames(List<String>, String)</B></A> -
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117 Static method in class compbio.engine.client.<A HREF="../compbio/engine/client/PathValidator.html" title="class in compbio.engine.client">PathValidator</A>
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119 <DT><A HREF="../compbio/ws/client/Jws2Client.html#validURL(java.lang.String)"><B>validURL(String)</B></A> -
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120 Static method in class compbio.ws.client.<A HREF="../compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>
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121 <DD>Attempt to construct the URL object from the string
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122 <DT><A HREF="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata"><B>ValueConstrain</B></A> - Class in <A HREF="../compbio/metadata/package-summary.html">compbio.metadata</A><DD>The type and the lower and upper boundaries for numerical value.<DT><A HREF="../compbio/metadata/ValueConstrain.html#ValueConstrain()"><B>ValueConstrain()</B></A> -
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123 Constructor for class compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</A>
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125 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata"><B>ValueConstrain.Type</B></A> - Enum in <A HREF="../compbio/metadata/package-summary.html">compbio.metadata</A><DD> <DT><A HREF="../compbio/data/_structure/JnetAnnotation.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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126 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure">JnetAnnotation</A>
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127 <DD>Returns the enum constant of this type with the specified name.
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128 <DT><A HREF="../compbio/data/_structure/JpredAnnotation.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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129 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure">JpredAnnotation</A>
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130 <DD>Returns the enum constant of this type with the specified name.
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131 <DT><A HREF="../compbio/data/sequence/ConservationMethod.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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132 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>
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133 <DD>Returns the enum constant of this type with the specified name.
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134 <DT><A HREF="../compbio/data/sequence/DisorderMethod.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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135 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>
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136 <DD>Returns the enum constant of this type with the specified name.
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137 <DT><A HREF="../compbio/data/sequence/Program.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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138 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>
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139 <DD>Returns the enum constant of this type with the specified name.
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140 <DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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141 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>
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142 <DD>Returns the enum constant of this type with the specified name.
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143 <DT><A HREF="../compbio/engine/client/Executable.ExecProvider.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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144 Static method in enum compbio.engine.client.<A HREF="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>
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145 <DD>Returns the enum constant of this type with the specified name.
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146 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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147 Static method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>
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148 <DD><B>Deprecated.</B> Returns the enum constant of this type with the specified name.
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149 <DT><A HREF="../compbio/metadata/JobStatus.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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150 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>
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151 <DD>Returns the enum constant of this type with the specified name.
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152 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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153 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>
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154 <DD>Returns the enum constant of this type with the specified name.
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155 <DT><A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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156 Static method in enum compbio.stat.servlet.util.<A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</A>
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157 <DD>Returns the enum constant of this type with the specified name.
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158 <DT><A HREF="../compbio/ws/client/Services.html#valueOf(java.lang.String)"><B>valueOf(String)</B></A> -
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159 Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>
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160 <DD>Returns the enum constant of this type with the specified name.
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161 <DT><A HREF="../compbio/data/_structure/JnetAnnotation.html#values()"><B>values()</B></A> -
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162 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure">JnetAnnotation</A>
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163 <DD>Returns an array containing the constants of this enum type, in
164 the order they are declared.
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165 <DT><A HREF="../compbio/data/_structure/JpredAnnotation.html#values()"><B>values()</B></A> -
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166 Static method in enum compbio.data._structure.<A HREF="../compbio/data/_structure/JpredAnnotation.html" title="enum in compbio.data._structure">JpredAnnotation</A>
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167 <DD>Returns an array containing the constants of this enum type, in
168 the order they are declared.
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169 <DT><A HREF="../compbio/data/sequence/ConservationMethod.html#values()"><B>values()</B></A> -
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170 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>
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171 <DD>Returns an array containing the constants of this enum type, in
172 the order they are declared.
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173 <DT><A HREF="../compbio/data/sequence/DisorderMethod.html#values()"><B>values()</B></A> -
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174 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>
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175 <DD>Returns an array containing the constants of this enum type, in
176 the order they are declared.
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177 <DT><A HREF="../compbio/data/sequence/Program.html#values()"><B>values()</B></A> -
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178 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>
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179 <DD>Returns an array containing the constants of this enum type, in
180 the order they are declared.
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181 <DT><A HREF="../compbio/data/sequence/SMERFSConstraints.html#values()"><B>values()</B></A> -
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182 Static method in enum compbio.data.sequence.<A HREF="../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>
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183 <DD>Returns an array containing the constants of this enum type, in
184 the order they are declared.
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185 <DT><A HREF="../compbio/engine/client/Executable.ExecProvider.html#values()"><B>values()</B></A> -
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186 Static method in enum compbio.engine.client.<A HREF="../compbio/engine/client/Executable.ExecProvider.html" title="enum in compbio.engine.client">Executable.ExecProvider</A>
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187 <DD>Returns an array containing the constants of this enum type, in
188 the order they are declared.
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189 <DT><A HREF="../compbio/engine/cluster/dundee/_Queue.html#values()"><B>values()</B></A> -
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190 Static method in enum compbio.engine.cluster.dundee.<A HREF="../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>
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191 <DD><B>Deprecated.</B> Returns an array containing the constants of this enum type, in
192 the order they are declared.
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193 <DT><A HREF="../compbio/metadata/JobStatus.html#values()"><B>values()</B></A> -
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194 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>
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195 <DD>Returns an array containing the constants of this enum type, in
196 the order they are declared.
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197 <DT><A HREF="../compbio/metadata/ValueConstrain.Type.html#values()"><B>values()</B></A> -
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198 Static method in enum compbio.metadata.<A HREF="../compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>
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199 <DD>Returns an array containing the constants of this enum type, in
200 the order they are declared.
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201 <DT><A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html#values()"><B>values()</B></A> -
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202 Static method in enum compbio.stat.servlet.util.<A HREF="../compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</A>
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203 <DD>Returns an array containing the constants of this enum type, in
204 the order they are declared.
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205 <DT><A HREF="../compbio/ws/client/Services.html#values()"><B>values()</B></A> -
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206 Static method in enum compbio.ws.client.<A HREF="../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>
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207 <DD>Returns an array containing the constants of this enum type, in
208 the order they are declared.
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