2 ## CHANGE THIS (The root directory where to store all the log files)
\r
5 ## Uncomment to enable JWS2 activity logging to standard out (to the console if available)
\r
6 ## for possible log levels please refer to Log4j documentation http://logging.apache.org/log4j/1.2/manual.html
\r
7 ## Valid log levels are:
\r
8 ## TRACE - log everything from below including very detailed messages (useful for debugging only)
\r
9 ## DEBUG - log everything from below including some minor events (useful for debugging only)
\r
10 ## INFO - log everything from below including some information messages
\r
11 ## WARN - log error and warnings
\r
12 ## ERROR - log errors and fatal events only
\r
13 ## FATAL - log fatal events only
\r
15 #log4j.rootLogger=ERROR, stdout
\r
16 #log4j.appender.stdout=org.apache.log4j.ConsoleAppender
\r
17 #log4j.appender.stdout.Target=System.out
\r
18 #log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
\r
19 #log4j.appender.stdout.layout.ConversionPattern=%m%n
\r
21 ## Uncomment to enable JWS2 activity logging to the file
\r
22 #log4j.logger.compbio=ERROR, ACTIVITY
\r
23 #log4j.appender.ACTIVITY=org.apache.log4j.RollingFileAppender
\r
24 #log4j.appender.ACTIVITY.File=${logDir}/activity.log
\r
25 #log4j.appender.ACTIVITY.MaxFileSize=10MB
\r
26 #log4j.appender.ACTIVITY.MaxBackupIndex=10000
\r
27 #log4j.appender.ACTIVITY.layout=org.apache.log4j.PatternLayout
\r
28 #log4j.appender.ACTIVITY.layout.ConversionPattern=%d{MM-dd@HH:mm:ss} %-5p %3x - %m%n
\r
30 ## Uncomment for web access logging. Please do not change the log level!
\r
31 #log4j.logger.ClustalWS-stats=INFO, STAT
\r
32 #log4j.logger.MuscleWS-stats=INFO, STAT
\r
33 #log4j.logger.TcoffeeWS-stats=INFO, STAT
\r
34 #log4j.logger.MafftWS-stats=INFO, STAT
\r
35 #log4j.logger.ProbconsWS-stats=INFO, STAT
\r
36 #log4j.appender.STAT=org.apache.log4j.RollingFileAppender
\r
37 #log4j.appender.STAT.File=${logDir}/wsaccess.log
\r
38 #log4j.appender.STAT.MaxFileSize=10MB
\r
39 #log4j.appender.STAT.MaxBackupIndex=10000
\r
40 #log4j.appender.STAT.layout=org.apache.log4j.PatternLayout
\r
41 #log4j.appender.STAT.layout.ConversionPattern=%t %d %m%n
\r
43 ## Uncomment for separate local engine execution log (debugging only)
\r
44 #log4j.logger.compbio.engine.local.LocalExecutorService=INFO, C
\r
45 #log4j.appender.C=org.apache.log4j.FileAppender
\r
46 #log4j.appender.C.File=LocalExecutorService.log
\r
47 #log4j.appender.C.layout=org.apache.log4j.PatternLayout
\r
48 #log4j.appender.C.layout.ConversionPattern=%m%n
\r
50 ## Parameter combinator logger (testing only)
\r
51 #log4j.logger.RunnerLogger=ERROR, RUNNER
\r
52 #log4j.appender.RUNNER=org.apache.log4j.FileAppender
\r
53 #log4j.appender.RUNNER.File=RunnerParam.log
\r
54 #log4j.appender.RUNNER.layout=org.apache.log4j.PatternLayout
\r
55 #log4j.appender.RUNNER.layout.ConversionPattern=%r [%t] %p %c %x - %m%n
\r
58 ## NOT IN USE - collection of patterns choose the one that suits you
\r
59 # %d{ABSOLUTE} %5p %c{1}:%L -
\r
60 #log4j.appender.C.layout.ConversionPattern=%-4r [%t] %-5p %c %x - %m%n
\r
61 # %d{MM-dd@HH:mm:ss} %-5p (%13F:%L) %3x -
\r
62 #log4j.appender.ClustalWS-stats.layout.ConversionPattern=%p %d %t %C{4} %m%n
\r