1 J2SApplet exec testApplet start applet null
2 swingjs.api.Interface creating instance of javajs.util.AjaxURLStreamHandlerFactory
3 get parameter: language = null
4 get parameter: name = testApplet
5 get parameter: syncId = 2491377188955504
7 JSAppletViewer initializing2
9 JSGraphicsConfiguration initialized
10 swingjs.api.Interface creating instance of swingjs.JSGraphicsEnvironment
11 JSGraphicsEnvironment initialized
12 swingjs.api.Interface creating instance of swingjs.JSScreenDevice
13 JSScreenDevice initialized
14 JSAppletViewer thread run1 mode=0 status=0
15 JSAppletViewer thread run1 mode=1 status=1
16 JSAppletViewer runloader
17 get parameter: main = jalview.bin.Jalview
18 swingjs.api.Interface creating instance of swingjs.JSApplet
19 swingjs.api.Interface creating instance of swingjs.plaf.HTML5LookAndFeel
21 JSAppletViewer thread run1 mode=1 status=76
22 testApplet running jalview.bin.Jalview
23 Running main(args) in class jalview.bin.Jalview
25 null Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/71.0.3578.98 Safari/537.36 Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/71.0.3578.98 Safari/537.36
26 JSUtil getting Java resource sun/util/resources/CalendarData.properties
27 Processing swingjs/j2s/sun/util/resources/CalendarData.properties [1780]
28 swingjs.api.Interface creating instance of java.util.PropertyResourceBundle
29 JSUtil getting Java resource sun/util/resources/CalendarData_en.properties
30 Processing swingjs/j2s/sun/util/resources/CalendarData_en.properties [1937]
31 swingjs.api.Interface creating instance of sun.util.calendar.Gregorian
32 swingjs.api.Interface creating instance of sun.text.resources.FormatData
33 swingjs.api.Interface creating instance of sun.text.resources.FormatData_en
34 Loading jalview properties from : https://./.jalview_properties
35 Disabling Jalview writing to user's local properties file.
37 Jalview Debugging Output Follows.
38 Getting messages for lang: en_US
39 JSUtil getting Java resource lang/Messages.properties
40 Processing swingjs/j2s/lang/Messages.properties [82729]
41 JSUtil getting Java resource lang/Messages_en.properties
42 Processing swingjs/j2s/lang/Messages_en.properties [5]
43 JSUtil getting Java resource lang/Messages_en_US.properties
44 Processing swingjs/j2s/lang/Messages_en_US.properties [5]
45 JSUtil getting Java resource swingjs/jquery/j2sMenu.js
46 Processing swingjs/j2s/swingjs/jquery/j2sMenu.js [27197]
48 JSFrameViewer creating new canvas testApplet_canvas2: 900 613
49 JSWindowUI windowOpened true
50 JSFrameUI windowActivated true
51 swingjs.api.Interface creating instance of swingjs.JSGraphicsConfiguration
52 JSGraphicsConfiguration initialized
53 JSPopupMenuUI processing 0 _hide for testApplet_PopupMenuUI_46_46
54 JSPopupMenuUI processing 1 _hide for testApplet_PopupMenuUI_46_46
55 noclickout 0 1548730342022
56 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
57 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
59 JSPopupMenuUI processing 2 focus for testApplet_PopupMenuUI_46_46
60 JSPopupMenuUI processing 3 onover3 for testApplet_PopupMenuUI_46_46
61 JSPopupMenuUI processing 4 blur for testApplet_PopupMenuUI_46_46
62 JSPopupMenuUI processing 5 focus for testApplet_PopupMenuUI_46_46
63 JSPopupMenuUI processing 6 onover1 for testApplet_PopupMenuUI_46_46
64 JSPopupMenuUI processing 7 blur for testApplet_PopupMenuUI_46_46
65 JSPopupMenuUI processing 8 focus for testApplet_PopupMenuUI_46_46
66 JSPopupMenuUI processing 9 onover1 for testApplet_PopupMenuUI_46_46
67 JSPopupMenuUI processing 10 blur for testApplet_PopupMenuUI_46_46
68 JSPopupMenuUI processing 11 focus for testApplet_PopupMenuUI_46_46
69 JSPopupMenuUI processing 12 onover1 for testApplet_PopupMenuUI_46_46
70 JSPopupMenuUI processing 13 blur for testApplet_PopupMenuUI_46_46
71 JSPopupMenuUI processing 14 focus for testApplet_PopupMenuUI_46_46
72 JSPopupMenuUI processing 15 onover1 for testApplet_PopupMenuUI_46_46
73 JSPopupMenuUI processing 16 blur for testApplet_PopupMenuUI_46_46
74 JSPopupMenuUI processing 17 focus for testApplet_PopupMenuUI_46_46
75 JSPopupMenuUI processing 18 onover3 for testApplet_PopupMenuUI_46_46
76 JSPopupMenuUI processing 19 blur for testApplet_PopupMenuUI_46_46
77 JSPopupMenuUI processing 20 focus for testApplet_PopupMenuUI_46_46
78 JSPopupMenuUI processing 21 onover3 for testApplet_PopupMenuUI_46_46
79 JSPopupMenuUI processing 22 blur for testApplet_PopupMenuUI_46_46
80 JSPopupMenuUI processing 23 focus for testApplet_PopupMenuUI_46_46
81 JSPopupMenuUI processing 24 onover1 for testApplet_PopupMenuUI_46_46
82 JSPopupMenuUI processing 25 _hide for testApplet_PopupMenuUI_46_46
83 JSPopupMenuUI processing 26 _closeSubmenus for testApplet_PopupMenuUI_46_46
84 JSPopupMenuUI processing 27 blur for testApplet_PopupMenuUI_46_46
85 JSPopupMenuUI processing 28 focus for testApplet_PopupMenuUI_46_46
86 JSPopupMenuUI processing 29 onover1 for testApplet_PopupMenuUI_46_46
87 JSPopupMenuUI processing 30 _hide for testApplet_PopupMenuUI_46_46
88 JSPopupMenuUI processing 31 _closeSubmenus for testApplet_PopupMenuUI_46_46
89 JSPopupMenuUI processing 32 blur for testApplet_PopupMenuUI_46_46
90 JSPopupMenuUI processing 33 focus for testApplet_PopupMenuUI_46_46
91 JSPopupMenuUI processing 34 onover3 for testApplet_PopupMenuUI_46_46
92 JSPopupMenuUI processing 35 _hide for testApplet_PopupMenuUI_46_46
93 JSPopupMenuUI processing 36 _closeSubmenus for testApplet_PopupMenuUI_46_46
94 JSPopupMenuUI processing 37 blur for testApplet_PopupMenuUI_46_46
95 JSPopupMenuUI processing 38 focus for testApplet_PopupMenuUI_46_46
96 JSPopupMenuUI processing 39 onover1 for testApplet_PopupMenuUI_46_46
97 JSPopupMenuUI processing 40 _hide for testApplet_PopupMenuUI_46_46
98 JSPopupMenuUI processing 41 _closeSubmenus for testApplet_PopupMenuUI_46_46
99 JSPopupMenuUI processing 42 blur for testApplet_PopupMenuUI_46_46
100 JSPopupMenuUI processing 43 focus for testApplet_PopupMenuUI_46_46
101 JSPopupMenuUI processing 44 onover3 for testApplet_PopupMenuUI_46_46
102 JSPopupMenuUI processing 45 _hide for testApplet_PopupMenuUI_46_46
103 JSPopupMenuUI processing 46 _closeSubmenus for testApplet_PopupMenuUI_46_46
104 JSPopupMenuUI processing 47 blur for testApplet_PopupMenuUI_46_46
105 JSPopupMenuUI processing 48 focus for testApplet_PopupMenuUI_46_46
106 JSPopupMenuUI processing 49 onover1 for testApplet_PopupMenuUI_46_46
107 JSPopupMenuUI processing 50 _hide for testApplet_PopupMenuUI_46_46
108 JSPopupMenuUI processing 51 _closeSubmenus for testApplet_PopupMenuUI_46_46
109 JSPopupMenuUI processing 52 blur for testApplet_PopupMenuUI_46_46
110 JSPopupMenuUI processing 53 focus for testApplet_PopupMenuUI_46_46
111 JSPopupMenuUI processing 54 onover1 for testApplet_PopupMenuUI_46_46
112 JSPopupMenuUI processing 55 _hide for testApplet_PopupMenuUI_46_46
113 JSPopupMenuUI processing 56 _closeSubmenus for testApplet_PopupMenuUI_46_46
114 JSPopupMenuUI processing 57 blur for testApplet_PopupMenuUI_46_46
115 JSPopupMenuUI processing 58 focus for testApplet_PopupMenuUI_46_46
116 JSPopupMenuUI processing 59 onover1 for testApplet_PopupMenuUI_46_46
117 JSPopupMenuUI processing 60 _hide for testApplet_PopupMenuUI_46_46
118 JSPopupMenuUI processing 61 _closeSubmenus for testApplet_PopupMenuUI_46_46
119 JSPopupMenuUI processing 62 blur for testApplet_PopupMenuUI_46_46
120 JSPopupMenuUI processing 63 focus for testApplet_PopupMenuUI_46_46
121 JSPopupMenuUI processing 64 onover1 for testApplet_PopupMenuUI_46_46
122 JSPopupMenuUI processing 65 _hide for testApplet_PopupMenuUI_46_46
123 JSPopupMenuUI processing 66 _closeSubmenus for testApplet_PopupMenuUI_46_46
124 JSPopupMenuUI processing 67 blur for testApplet_PopupMenuUI_46_46
125 JSPopupMenuUI processing 68 focus for testApplet_PopupMenuUI_46_46
126 JSPopupMenuUI processing 69 onover1 for testApplet_PopupMenuUI_46_46
127 JSPopupMenuUI processing 70 _hide for testApplet_PopupMenuUI_46_46
128 JSPopupMenuUI processing 71 _closeSubmenus for testApplet_PopupMenuUI_46_46
129 JSPopupMenuUI processing 72 blur for testApplet_PopupMenuUI_46_46
130 JSPopupMenuUI processing 73 focus for testApplet_PopupMenuUI_46_46
131 JSPopupMenuUI processing 74 onover1 for testApplet_PopupMenuUI_46_46
132 JSPopupMenuUI processing 75 _hide for testApplet_PopupMenuUI_46_46
133 JSPopupMenuUI processing 76 _closeSubmenus for testApplet_PopupMenuUI_46_46
134 JSPopupMenuUI processing 77 blur for testApplet_PopupMenuUI_46_46
135 JSPopupMenuUI processing 78 focus for testApplet_PopupMenuUI_46_46
136 JSPopupMenuUI processing 79 onover1 for testApplet_PopupMenuUI_46_46
137 JSPopupMenuUI processing 80 onpress for testApplet_PopupMenuUI_46_46
138 JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.css
139 Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.css [24188]
140 JSUtil getting Java resource swingjs/jquery/jquery-ui-j2sslider.js
141 Processing swingjs/j2s/swingjs/jquery/jquery-ui-j2sslider.js [22356]
142 JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
145 JSPopupMenuUI processing 81 collapseAll for testApplet_PopupMenuUI_46_46
146 JSPopupMenuUI processing 82 select for testApplet_PopupMenuUI_46_46
148 JSPopupMenuUI processing 83 collapseAll for testApplet_PopupMenuUI_46_46
149 JSPopupMenuUI processing 84 onclick for testApplet_PopupMenuUI_46_46
151 JSFrameViewer creating new canvas testApplet_canvas3: 400 230
152 JSWindowUI windowOpened true
154 JSFrameUI windowActivated true
155 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
156 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
157 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
158 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
159 Platform: timer mark 0.0 0.0 Desktop Fetching 1 sequence queries from ENSEMBL
160 Platform: timer mark 0.708 0.676 EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json
161 Platform: timer mark 0.861 0.145 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
162 Platform: timer mark 0.997 0.135 EnsembleRestClient.getJSON https://rest.ensembl.org/info/rest?content-type=application/json
163 EnsemblRestClient expected ENSEMBL REST version 7.0 but found 9.0, see https://github.com/Ensembl/ensembl-rest/wiki/Change-log
164 Platform: timer mark 1.151 0.136 EnsembleRestClient.getJSON https://rest.ensembl.org/info/data?content-type=application/json
165 Platform: timer mark 1.153 0.002 EnsemblSeqProx.fetchSeq
166 Platform: timer mark 1.153 0.0 ENS seqproxy
167 Platform: timer mark 2.374 1.22 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENSG00000157764?type=genomic&Accept=application/json&content-type=application/json&object_type=Gene
168 Platform: timer mark 2.468 0.094 ENS seqproxy2
169 Platform: timer mark 2.564 0.096 ESP.getsequencerec1
170 Platform: timer mark 14.377 11.8 EnsembleRestClient.getJSON https://rest.ensembl.org/overlap/id/ENSG00000157764?content-type=application/json&object_type=Gene&feature=gene&feature=transcript&feature=exon&feature=cds&feature=variation
171 Platform: timer mark 19.553 5.176 ESP.getsequencerec2
172 Platform: timer mark 19.579 0.026 ESP. xfer 46594
173 Platform: timer mark 25.302 5.723 ESP.transferFeatures
174 Platform: timer mark 25.302 0.0 ESP.addfeat done
175 Platform: timer mark 25.303 0.001 ESP. getdataseq
176 Platform: timer mark 25.303 0.0 ESP. getxref
177 Platform: timer mark 26.69 1.382 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSG00000157764?content-type=application/json&all_levels=1
178 Platform: timer mark 26.712 0.022 ESP. seqprox done
179 Platform: timer mark 26.862 0.148 EnsembleRestClient.getJSON https://rest.ensembl.org/lookup/id/ENSG00000157764?content-type=application/json&object_type=Gene
180 Platform: timer mark 27.648 0.786 ESP. getdataseq
181 Platform: timer mark 27.65 0.002 ESP. getxref
182 Platform: timer mark 28.252 0.602 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646891?content-type=application/json&all_levels=1
183 Platform: timer mark 28.257 0.005 ESP. seqprox done
184 Adding protein product for ENST00000646891
185 Platform: timer mark 28.541 0.279 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
186 Platform: timer mark 28.541 0.0 EnsemblSeqProx.fetchSeq
187 Platform: timer mark 28.542 0.001 ENS seqproxy
188 Platform: timer mark 28.726 0.183 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646891?type=protein&Accept=application/json&content-type=application/json
189 Platform: timer mark 28.727 0.001 ENS seqproxy2
190 Platform: timer mark 28.728 0.001 ESP. getdataseq
191 Platform: timer mark 28.729 0.001 ESP. getxref
192 Platform: timer mark 29.058 0.327 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493543?content-type=application/json&all_levels=1
193 Platform: timer mark 29.061 0.003 ESP. seqprox done
194 Platform: timer mark 29.742 0.681 ESP. getdataseq
195 Platform: timer mark 29.742 0.0 ESP. getxref
196 Platform: timer mark 30.018 0.275 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000496384?content-type=application/json&all_levels=1
197 Platform: timer mark 30.019 0.001 ESP. seqprox done
198 Adding protein product for ENST00000496384
199 Platform: timer mark 30.02 0.001 EnsemblSeqProx.fetchSeq
200 Platform: timer mark 30.02 0.0 ENS seqproxy
201 Platform: timer mark 30.199 0.178 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000496384?type=protein&Accept=application/json&content-type=application/json
202 Platform: timer mark 30.2 0.001 ENS seqproxy2
203 Platform: timer mark 30.201 0.001 ESP. getdataseq
204 Platform: timer mark 30.201 0.0 ESP. getxref
205 Platform: timer mark 30.362 0.16 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000419060?content-type=application/json&all_levels=1
206 Platform: timer mark 30.364 0.002 ESP. seqprox done
207 Platform: timer mark 30.807 0.443 ESP. getdataseq
208 Platform: timer mark 30.808 0.001 ESP. getxref
209 Platform: timer mark 30.982 0.174 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000469930?content-type=application/json&all_levels=1
210 Platform: timer mark 30.983 0.001 ESP. seqprox done
211 Adding protein product for ENST00000469930
212 Platform: timer mark 30.984 0.001 EnsemblSeqProx.fetchSeq
213 Platform: timer mark 30.985 0.001 ENS seqproxy
214 Platform: timer mark 31.148 0.163 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000469930?type=protein&Accept=application/json&content-type=application/json
215 Platform: timer mark 31.149 0.001 ENS seqproxy2
216 Platform: timer mark 31.149 0.0 ESP. getdataseq
217 Platform: timer mark 31.15 0.001 ESP. getxref
218 Platform: timer mark 31.297 0.146 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495858?content-type=application/json&all_levels=1
219 Platform: timer mark 31.299 0.002 ESP. seqprox done
220 Platform: timer mark 31.777 0.478 ESP. getdataseq
221 Platform: timer mark 31.777 0.0 ESP. getxref
222 Platform: timer mark 31.959 0.181 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000288602?content-type=application/json&all_levels=1
223 Platform: timer mark 31.961 0.002 ESP. seqprox done
224 Adding protein product for ENST00000288602
225 Platform: timer mark 31.961 0.0 EnsemblSeqProx.fetchSeq
226 Platform: timer mark 31.962 0.001 ENS seqproxy
227 Platform: timer mark 32.171 0.208 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000288602?type=protein&Accept=application/json&content-type=application/json
228 Platform: timer mark 32.173 0.002 ENS seqproxy2
229 Platform: timer mark 32.173 0.0 ESP. getdataseq
230 Platform: timer mark 32.175 0.002 ESP. getxref
231 Platform: timer mark 32.324 0.149 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000288602?content-type=application/json&all_levels=1
232 Platform: timer mark 32.326 0.002 ESP. seqprox done
233 Platform: timer mark 32.775 0.449 ESP. getdataseq
234 Platform: timer mark 32.775 0.0 ESP. getxref
235 Platform: timer mark 32.929 0.152 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642272?content-type=application/json&all_levels=1
236 Platform: timer mark 32.93 0.001 ESP. seqprox done
237 Adding protein product for ENST00000642272
238 Platform: timer mark 32.932 0.002 EnsemblSeqProx.fetchSeq
239 Platform: timer mark 32.932 0.0 ENS seqproxy
241 Platform: timer mark 33.086 0.153 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642272?type=protein&Accept=application/json&content-type=application/json
242 No protein product found for ENST00000642272
243 Platform: timer mark 33.48 0.394 ESP. getdataseq
244 Platform: timer mark 33.481 0.001 ESP. getxref
245 Platform: timer mark 33.883 0.402 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643790?content-type=application/json&all_levels=1
246 Platform: timer mark 33.884 0.001 ESP. seqprox done
247 Adding protein product for ENST00000643790
248 Platform: timer mark 33.885 0.001 EnsemblSeqProx.fetchSeq
249 Platform: timer mark 33.885 0.0 ENS seqproxy
251 Platform: timer mark 34.069 0.183 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643790?type=protein&Accept=application/json&content-type=application/json
252 No protein product found for ENST00000643790
253 Platform: timer mark 34.476 0.407 ESP. getdataseq
254 Platform: timer mark 34.478 0.002 ESP. getxref
255 Platform: timer mark 34.866 0.388 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646427?content-type=application/json&all_levels=1
256 Platform: timer mark 34.867 0.001 ESP. seqprox done
257 Adding protein product for ENST00000646427
258 Platform: timer mark 34.869 0.002 EnsemblSeqProx.fetchSeq
259 Platform: timer mark 34.869 0.0 ENS seqproxy
261 Platform: timer mark 35.056 0.186 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646427?type=protein&Accept=application/json&content-type=application/json
262 No protein product found for ENST00000646427
263 Platform: timer mark 35.448 0.392 ESP. getdataseq
264 Platform: timer mark 35.449 0.001 ESP. getxref
265 Platform: timer mark 35.836 0.386 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642808?content-type=application/json&all_levels=1
266 Platform: timer mark 35.836 0.0 ESP. seqprox done
267 Adding protein product for ENST00000642808
268 Platform: timer mark 35.838 0.002 EnsemblSeqProx.fetchSeq
269 Platform: timer mark 35.838 0.0 ENS seqproxy
271 Platform: timer mark 35.986 0.147 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642808?type=protein&Accept=application/json&content-type=application/json
272 No protein product found for ENST00000642808
273 Platform: timer mark 36.376 0.39 ESP. getdataseq
274 Platform: timer mark 36.377 0.001 ESP. getxref
275 Platform: timer mark 36.76 0.383 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000643356?content-type=application/json&all_levels=1
276 Platform: timer mark 36.761 0.001 ESP. seqprox done
277 Adding protein product for ENST00000643356
278 Platform: timer mark 36.762 0.001 EnsemblSeqProx.fetchSeq
279 Platform: timer mark 36.763 0.001 ENS seqproxy
281 Platform: timer mark 36.931 0.167 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000643356?type=protein&Accept=application/json&content-type=application/json
282 No protein product found for ENST00000643356
283 Platform: timer mark 37.389 0.458 ESP. getdataseq
284 Platform: timer mark 37.39 0.001 ESP. getxref
285 Platform: timer mark 37.783 0.393 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000497784?content-type=application/json&all_levels=1
286 Platform: timer mark 37.785 0.002 ESP. seqprox done
287 Adding protein product for ENST00000497784
288 Platform: timer mark 37.786 0.001 EnsemblSeqProx.fetchSeq
289 Platform: timer mark 37.787 0.001 ENS seqproxy
290 Platform: timer mark 37.963 0.175 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000497784?type=protein&Accept=application/json&content-type=application/json
291 Platform: timer mark 37.965 0.002 ENS seqproxy2
292 Platform: timer mark 37.966 0.001 ESP. getdataseq
293 Platform: timer mark 37.966 0.0 ESP. getxref
294 Platform: timer mark 38.133 0.166 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000420119?content-type=application/json&all_levels=1
295 Platform: timer mark 38.134 0.001 ESP. seqprox done
296 Platform: timer mark 38.548 0.414 ESP. getdataseq
297 Platform: timer mark 38.549 0.001 ESP. getxref
298 Platform: timer mark 38.688 0.138 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646334?content-type=application/json&all_levels=1
299 Platform: timer mark 38.689 0.001 ESP. seqprox done
300 Adding protein product for ENST00000646334
301 Platform: timer mark 38.829 0.139 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
302 Platform: timer mark 38.83 0.001 EnsemblSeqProx.fetchSeq
303 Platform: timer mark 38.831 0.001 ENS seqproxy
305 Platform: timer mark 39.007 0.175 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646334?type=protein&Accept=application/json&content-type=application/json
306 No protein product found for ENST00000646334
307 Platform: timer mark 39.468 0.461 ESP. getdataseq
308 Platform: timer mark 39.469 0.001 ESP. getxref
309 Platform: timer mark 39.876 0.406 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000646730?content-type=application/json&all_levels=1
310 Platform: timer mark 39.877 0.001 ESP. seqprox done
311 Adding protein product for ENST00000646730
312 Platform: timer mark 39.878 0.001 EnsemblSeqProx.fetchSeq
313 Platform: timer mark 39.879 0.001 ENS seqproxy
314 Platform: timer mark 40.062 0.182 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000646730?type=protein&Accept=application/json&content-type=application/json
315 Platform: timer mark 40.063 0.001 ENS seqproxy2
316 Platform: timer mark 40.064 0.001 ESP. getdataseq
317 Platform: timer mark 40.065 0.001 ESP. getxref
318 Platform: timer mark 40.233 0.167 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000494784?content-type=application/json&all_levels=1
319 Platform: timer mark 40.234 0.001 ESP. seqprox done
320 Platform: timer mark 40.685 0.451 ESP. getdataseq
321 Platform: timer mark 40.686 0.001 ESP. getxref
322 Platform: timer mark 40.861 0.174 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644650?content-type=application/json&all_levels=1
323 Platform: timer mark 40.862 0.001 ESP. seqprox done
324 Adding protein product for ENST00000644650
325 Platform: timer mark 40.864 0.002 EnsemblSeqProx.fetchSeq
326 Platform: timer mark 40.865 0.001 ENS seqproxy
327 Platform: timer mark 41.022 0.156 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644650?type=protein&Accept=application/json&content-type=application/json
328 Platform: timer mark 41.024 0.002 ENS seqproxy2
329 Platform: timer mark 41.025 0.001 ESP. getdataseq
330 Platform: timer mark 41.025 0.0 ESP. getxref
331 Platform: timer mark 41.288 0.262 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493783?content-type=application/json&all_levels=1
332 Platform: timer mark 41.29 0.002 ESP. seqprox done
333 Error retrieving protein for ENST00000644650: Index: -1, Size: 1
334 Platform: timer mark 41.854 0.564 ESP. getdataseq
335 Platform: timer mark 41.855 0.001 ESP. getxref
336 Platform: timer mark 42.028 0.172 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000647434?content-type=application/json&all_levels=1
337 Platform: timer mark 42.03 0.002 ESP. seqprox done
338 Adding protein product for ENST00000647434
339 Platform: timer mark 42.032 0.002 EnsemblSeqProx.fetchSeq
340 Platform: timer mark 42.033 0.001 ENS seqproxy
341 Platform: timer mark 42.214 0.18 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000647434?type=protein&Accept=application/json&content-type=application/json
342 Platform: timer mark 42.215 0.001 ENS seqproxy2
343 Platform: timer mark 42.216 0.001 ESP. getdataseq
344 Platform: timer mark 42.218 0.002 ESP. getxref
345 Platform: timer mark 42.386 0.168 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000495132?content-type=application/json&all_levels=1
346 Platform: timer mark 42.387 0.001 ESP. seqprox done
347 Platform: timer mark 43.127 0.74 ESP. getdataseq
348 Platform: timer mark 43.128 0.001 ESP. getxref
349 Platform: timer mark 43.301 0.172 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000479537?content-type=application/json&all_levels=1
350 Platform: timer mark 43.302 0.001 ESP. seqprox done
351 Adding protein product for ENST00000479537
352 Platform: timer mark 43.305 0.003 EnsemblSeqProx.fetchSeq
353 Platform: timer mark 43.305 0.0 ENS seqproxy
354 Platform: timer mark 43.517 0.211 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000479537?type=protein&Accept=application/json&content-type=application/json
355 Platform: timer mark 43.518 0.001 ENS seqproxy2
356 Platform: timer mark 43.52 0.002 ESP. getdataseq
357 Platform: timer mark 43.521 0.001 ESP. getxref
358 Platform: timer mark 43.682 0.161 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000418033?content-type=application/json&all_levels=1
359 Platform: timer mark 43.683 0.001 ESP. seqprox done
360 Error retrieving protein for ENST00000479537: Index: -1, Size: 1
361 Platform: timer mark 44.125 0.442 ESP. getdataseq
362 Platform: timer mark 44.126 0.001 ESP. getxref
363 Platform: timer mark 44.274 0.147 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000645443?content-type=application/json&all_levels=1
364 Platform: timer mark 44.276 0.002 ESP. seqprox done
365 Adding protein product for ENST00000645443
366 Platform: timer mark 44.277 0.001 EnsemblSeqProx.fetchSeq
367 Platform: timer mark 44.278 0.001 ENS seqproxy
369 Platform: timer mark 44.425 0.146 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000645443?type=protein&Accept=application/json&content-type=application/json
370 No protein product found for ENST00000645443
371 Platform: timer mark 44.955 0.53 ESP. getdataseq
372 Platform: timer mark 44.955 0.0 ESP. getxref
373 Platform: timer mark 45.389 0.432 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644905?content-type=application/json&all_levels=1
374 Platform: timer mark 45.39 0.001 ESP. seqprox done
375 Adding protein product for ENST00000644905
376 Platform: timer mark 45.393 0.003 EnsemblSeqProx.fetchSeq
377 Platform: timer mark 45.393 0.0 ENS seqproxy
379 Platform: timer mark 45.541 0.146 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644905?type=protein&Accept=application/json&content-type=application/json
380 No protein product found for ENST00000644905
381 Platform: timer mark 46.111 0.57 ESP. getdataseq
382 Platform: timer mark 46.112 0.001 ESP. getxref
383 Platform: timer mark 46.535 0.422 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642228?content-type=application/json&all_levels=1
384 Platform: timer mark 46.537 0.002 ESP. seqprox done
385 Adding protein product for ENST00000642228
386 Platform: timer mark 46.539 0.002 EnsemblSeqProx.fetchSeq
387 Platform: timer mark 46.54 0.001 ENS seqproxy
388 Platform: timer mark 46.708 0.168 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642228?type=protein&Accept=application/json&content-type=application/json
389 Platform: timer mark 46.71 0.002 ENS seqproxy2
390 Platform: timer mark 46.711 0.001 ESP. getdataseq
391 Platform: timer mark 46.712 0.001 ESP. getxref
392 Platform: timer mark 46.883 0.171 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000493678?content-type=application/json&all_levels=1
393 Platform: timer mark 46.884 0.001 ESP. seqprox done
394 Platform: timer mark 47.421 0.537 ESP. getdataseq
395 Platform: timer mark 47.421 0.0 ESP. getxref
396 Platform: timer mark 47.599 0.176 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644969?content-type=application/json&all_levels=1
397 Platform: timer mark 47.6 0.001 ESP. seqprox done
398 Adding protein product for ENST00000644969
399 Platform: timer mark 47.602 0.002 EnsemblSeqProx.fetchSeq
400 Platform: timer mark 47.603 0.001 ENS seqproxy
401 Platform: timer mark 47.781 0.176 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644969?type=protein&Accept=application/json&content-type=application/json
402 Platform: timer mark 47.782 0.001 ENS seqproxy2
403 Platform: timer mark 47.785 0.003 ESP. getdataseq
404 Platform: timer mark 47.786 0.001 ESP. getxref
405 Platform: timer mark 47.94 0.154 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENSP00000496776?content-type=application/json&all_levels=1
406 Platform: timer mark 47.941 0.001 ESP. seqprox done
407 Platform: timer mark 48.435 0.494 ESP. getdataseq
408 Platform: timer mark 48.436 0.001 ESP. getxref
409 Platform: timer mark 48.577 0.14 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000644120?content-type=application/json&all_levels=1
410 Platform: timer mark 48.579 0.002 ESP. seqprox done
411 Adding protein product for ENST00000644120
412 Platform: timer mark 48.58 0.001 EnsemblSeqProx.fetchSeq
413 Platform: timer mark 48.581 0.001 ENS seqproxy
415 Platform: timer mark 48.755 0.173 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000644120?type=protein&Accept=application/json&content-type=application/json
416 No protein product found for ENST00000644120
417 Platform: timer mark 49.205 0.45 ESP. getdataseq
418 Platform: timer mark 49.206 0.001 ESP. getxref
419 Platform: timer mark 49.588 0.38 EnsembleRestClient.getJSON https://rest.ensembl.org/xrefs/id/ENST00000642875?content-type=application/json&all_levels=1
420 Platform: timer mark 49.589 0.001 ESP. seqprox done
421 Adding protein product for ENST00000642875
422 Platform: timer mark 49.74 0.149 EnsembleRestClient.getJSON https://rest.ensembl.org/info/ping?content-type=application/json
423 Platform: timer mark 49.741 0.001 EnsemblSeqProx.fetchSeq
424 Platform: timer mark 49.742 0.001 ENS seqproxy
426 Platform: timer mark 49.894 0.15 EnsembleRestClient.getJSON https://rest.ensembl.org/sequence/id/ENST00000642875?type=protein&Accept=application/json&content-type=application/json
427 No protein product found for ENST00000642875
428 Platform: timer mark 50.194 0.3 Desktop Finished querying
429 Platform: timer mark 50.199 0.005 Desktop Parsing results.
430 JSDesktopIconUI SURRAGATE -- NOT IMPLEMENTED YET!
432 Platform: timer mark 63.835 13.636 Desktop null
433 JSFrameViewer creating new canvas testApplet_canvas4: 700 465
434 JSWindowUI windowOpened true
435 JSFrameUI windowActivated true
436 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
437 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
438 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
439 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
440 PostEventQueue posting tempEvent java.awt.SentEvent[] on [swingjs.JSToolkit object]
442 JSFrameViewer creating new canvas testApplet_canvas5: 173 18
444 JSFrameViewer creating new canvas testApplet_canvas6: 138 18
445 This is System.out. clear it
446 Add ?j2snocore to URL to see full class list; ?j2sdebug to use uncompressed j2s/core files
447 get _j2sClassList.txt Jalview TestX
448 New Sequence FetcherX
452 Example query: ENSG00000157764
453 Enter one or more accession IDs separated by a semi-colon ";"
454 Replace commas with semi-colons
455 Retrieved from ENSEMBLX
456 Sequence 1 ID: ENSG00000157764 Nucleotide: Cytosine (32)