1 <?xml version="1.0"?>
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3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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4 * Copyright (C) $$Year-Rel$$ The Jalview Authors
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6 * This file is part of Jalview.
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8 * Jalview is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License
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10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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12 * Jalview is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty
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14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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15 * PURPOSE. See the GNU General Public License for more details.
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17 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 * The Jalview Authors are detailed in the 'AUTHORS' file.
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20 <mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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21 xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
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23 History: Originally created from EMBL_common_V1.0
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24 Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd
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26 <class name="jalview.datamodel.xdb.embl.EmblFile">
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27 <map-to xml="EMBL_Services"/>
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28 <field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">
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29 <bind-xml name="entry"/>
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32 <field name="errors" type="jalview.datamodel.xdb.embl.EmblError" collection="vector">
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33 <bind-xml name="Error"/>
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36 <class name="jalview.datamodel.xdb.embl.EmblEntry">
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37 <field name="accession" type="string">
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38 <bind-xml location="accession" node="attribute"/>
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40 <!-- May 2015 changed from last-updated to match xml -->
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41 <field name="lastUpdated" type="string">
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42 <bind-xml location="lastUpdated" node="attribute"/>
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44 <field name="version" type="string">
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45 <bind-xml location="version" node="attribute"/>
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47 <field name="rCreated" type="string">
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48 <bind-xml location="releaseCreated" node="attribute"/>
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50 <field name="rLastUpdated" type="string">
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51 <bind-xml location="releaseLastUpdated" node="attribute"/>
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53 <field name="desc" type="string">
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54 <bind-xml name="description" node="element"/>
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56 <field name="keywords" type="string" collection="vector">
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57 <bind-xml name="keyword" node="element"/>
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59 <field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
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60 <bind-xml name="feature"/>
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62 <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
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63 <bind-xml name="dbreference" />
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65 <field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
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66 <bind-xml name="sequence"/>
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69 <class name="jalview.datamodel.xdb.embl.EmblSequence">
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70 <field name="type" type="string">
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71 <bind-xml name="type" node="attribute" location="type"/>
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73 <field name="version" type="string">
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74 <bind-xml name="version" node="attribute" location="version"/>
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76 <field name="sequence" type="string">
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77 <bind-xml node="text"/>
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80 <class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
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81 <field name="name" type="string">
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82 <bind-xml name="name" node="attribute"/>
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84 <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
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85 <bind-xml name="dbreference" node="element"/>
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87 <field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
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88 <bind-xml name="qualifier"/>
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90 <field name="locations" type="jalview.datamodel.xdb.embl.EmblFeatureLocations" collection="vector">
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91 <bind-xml name="location"/>
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94 <class name="jalview.datamodel.DBRefEntry" verify-constructable="false">
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95 <field name="accessionId" type="java.lang.String">
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96 <bind-xml name="primary" node="attribute"/>
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98 <field name="source" type="java.lang.String">
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99 <bind-xml name="db" node="attribute"/>
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101 <field name="version" type="string">
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102 <bind-xml name="secondary" node="attribute"/>
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105 <class name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
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106 <field name="name">
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107 <bind-xml name="name" node="attribute"/>
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109 <field name="evidence" type="string" collection="array">
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110 <bind-xml name="evidence" node="element"/>
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112 <field name="values" type="string" collection="array">
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113 <bind-xml name="value" node="element"/>
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116 <class name="jalview.datamodel.xdb.embl.EmblFeatureLocations">
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117 <field name="locationType" type="string">
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118 <bind-xml name="type" node="attribute"/>
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120 <field name="locationComplement" type="boolean">
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121 <bind-xml name="complement" node="attribute"/>
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123 <field name="locElements" type="jalview.datamodel.xdb.embl.EmblFeatureLocElement" collection="vector">
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124 <bind-xml name="locationElement"/>
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127 <class name="jalview.datamodel.xdb.embl.EmblFeatureLocElement">
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128 <field name="type" type="string">
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129 <bind-xml name="type" node="attribute"/>
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131 <field name="accession" type="string">
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132 <bind-xml name="accession" node="attribute"/>
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134 <field name="version" type="string">
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135 <bind-xml name="version" node="attribute"/>
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137 <field name="complement" type="boolean">
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138 <bind-xml name="complement"/>
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140 <field name="basePositions" type="jalview.datamodel.xdb.embl.BasePosition" collection="array">
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141 <bind-xml name="basePosition" node="element"/>
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144 <class name="jalview.datamodel.xdb.embl.BasePosition">
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145 <field name="type">
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146 <bind-xml name="type" node="attribute"/>
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149 <bind-xml node="text"/>
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