1 <?xml version="1.0"?>
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2 <mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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3 xsi:schemaLocation="http://castor.exolab.org/ castor-mapping.xsd">
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5 <class name="jalview.datamodel.xdb.embl.EmblFile">
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6 <map-to xml="EMBL_Services"/>
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7 <field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">
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8 <bind-xml name="entry"/>
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11 <field name="errors" type="jalview.datamodel.xdb.embl.EmblError" collection="vector">
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12 <bind-xml name="Error"/>
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15 <class name="jalview.datamodel.xdb.embl.EmblEntry">
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16 <map-to xml="entry"/>
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17 <field name="accession" type="string">
18 <bind-xml location="accession" node="attribute"/>
20 <field name="lastUpdated" type="string">
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21 <bind-xml location="last-updated" node="attribute"/>
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23 <field name="version" type="string">
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24 <bind-xml location="version" node="attribute"/>
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27 <field name="rCreated" type="string">
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28 <bind-xml location="releaseCreated" node="attribute"/>
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30 <field name="rLastUpdated" type="string">
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31 <bind-xml location="releaseLastUpdated" node="attribute"/>
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33 <field name="desc" type="string">
34 <bind-xml name="description" node="element"/>
36 <field name="Keywords" type="string" collection="vector">
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37 <bind-xml name="keyword" node="element"/>
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39 <field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
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40 <bind-xml location="sequence" node="element"/>
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42 <field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
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43 <bind-xml name="feature"/>
45 <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
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46 <bind-xml name="dbreference" />
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49 <class name="jalview.datamodel.xdb.embl.EmblSequence">
50 <map-to xml="sequence"/>
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51 <field name="type" type="string">
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52 <bind-xml name="type" node="attribute" location="type"/>
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54 <field name="version" type="string">
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55 <bind-xml name="version" node="attribute" location="version"/>
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57 <field name="sequence" type="string">
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58 <bind-xml node="text"/>
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61 <class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
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62 <map-to xml="feature"/>
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63 <field name="name" type="string">
64 <bind-xml name="name" node="attribute"/>
66 <field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
67 <bind-xml name="dbreference" node="element"/>
69 <field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
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70 <bind-xml name="qualifier"/>
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72 <field name="locations" type="jalview.datamodel.xdb.embl.EmblFeatureLocations" collection="vector">
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73 <bind-xml name="location"/>
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76 <class name="jalview.datamodel.DBRefEntry" verify-constructable="false">
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77 <field name="accessionId" type="java.lang.String"><!-- set-method="setAccessionId" get-method="getAccessionId"> -->
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78 <bind-xml name="primary" node="attribute"/>
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80 <field name="source" type="java.lang.String"> <!--set-method="setSource" get-method="getSource"> -->
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81 <bind-xml name="db" node="attribute"/>
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83 <field name="version" type="string"><!-- set-method="setVersion" get-method="getVersion"> -->
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84 <bind-xml name="secondary" node="attribute"/>
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87 <class name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
88 <map-to xml="Qualifier"/>
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90 <bind-xml name="name" node="attribute"/>
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93 <bind-xml node="text"/>
96 <class name="jalview.datamodel.xdb.embl.EmblFeatureLocations">
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97 <map-to xml="location"/>
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98 <field name="locationType" type="string">
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99 <bind-xml name="type" node="attribute"/>
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101 <field name="locationComplement" type="boolean">
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102 <bind-xml name="complement" node="attribute"/>
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104 <field name="locElements" type="jalview.datamodel.xdb.embl.EmblFeatureLocElement" collection="vector">
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105 <bind-xml name="locationElement"/>
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108 <class name="jalview.datamodel.xdb.embl.EmblFeatureLocElement">
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109 <map-to xml="locationElement"/>
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110 <field name="type" type="string">
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111 <bind-xml name="type" node="attribute"/>
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113 <field name="accession" type="string">
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114 <bind-xml name="accession" node="attribute"/>
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116 <field name="version" type="string">
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117 <bind-xml name="version" node="attribute"/>
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119 <field name="complement" type="boolean">
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120 <bind-xml name="complement"/>
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122 <field name="basePositions" type="jalview.datamodel.xdb.embl.BasePosition" collection="array">
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123 <bind-xml name="basePosition" node="element"/>
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126 <class name="jalview.datamodel.xdb.embl.BasePosition">
127 <map-to xml="basePosition"/>
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129 <bind-xml name="type" node="attribute"/>
132 <bind-xml node="text"/>
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