1 /* Copyright (c) 2011 Peter Troshin
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3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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18 package compbio.runner._impl;
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21 * Utility class for common Blast parameters
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23 * @author pvtroshin TODO
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25 public class BlastParameters {
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27 private BlastParameters() {
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28 } // prevent instantiation
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30 static String outputName = "output.blast";
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31 static String outputProfileName = "output.profile";
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32 static final String parInput = "-i";
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33 static final String parDatabase = "-d ";
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34 static final String parOutput = "-o";
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35 static final String parEvalue = "-e";
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36 final static String parDel = " ";
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37 static final String parAlView = "-m 9";
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