1 /* Copyright (c) 2009 Peter Troshin
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3 * Jalview Web Services @version: 2.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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18 package compbio.runner._impl;
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20 public final class Runners {
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25 public static Mcl getMclRunnable(String workDirectory) {
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26 return new Mcl(workDirectory);
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29 public static OB getOBRunnable(String workDirectory) {
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30 return new OB(workDirectory);
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33 public static Disembl getDisemblRunnable(String workDirectory) {
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34 return new Disembl(workDirectory);
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37 public static NetNglyc getNetNglycRunnable(String workDirectory) {
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38 return new NetNglyc();
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41 public static Ronn getRonnRunnable(String workDirectory) {
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42 return new Ronn(workDirectory);
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45 public static Tmhmm2 getTmhmm2Runnable(String workDirectory) {
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46 return new Tmhmm2(workDirectory);
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49 public static RPSBlast getRPSBlastRunnable(String workDirectory) {
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50 return new RPSBlast(workDirectory);
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53 public static BlastAll getBlastAllRunnable(String workDirectory) {
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54 return new BlastAll(workDirectory);
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57 public static PSIBlast getPSIBlastRunnable(String workDirectory) {
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58 return new PSIBlast(workDirectory);
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