1 <?xml version="1.0" encoding="UTF-8"?>
2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
5 <xs:element name="Version" type="xs:string"/>
7 <xs:documentation>Vamsas Document Version Number</xs:documentation>
9 <xs:element name="LockFile">
12 <xs:extension base="xs:string"/>
16 <xs:element name="VAMSAS">
19 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
20 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
22 <xs:attribute name="id" type="xs:ID" use="optional"/>
25 <xs:element name="Tree">
28 <xs:element name="title" type="xs:string" minOccurs="0" maxOccurs="1"/>
29 <xs:element name="newick" minOccurs="1" maxOccurs="unbounded">
32 <xs:extension base="xs:string">
33 <xs:attribute name="title" type="xs:string" use="optional"/>
34 <xs:attribute name="id" type="xs:ID" use="optional"/>
39 <xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
41 <xs:attribute name="id" type="xs:ID" use="optional"/>
44 <xs:element name="Provenance">
47 <xs:element name="entry" minOccurs="0" maxOccurs="unbounded">
50 <xs:element name="User" type="xs:string"/>
51 <xs:element name="Action" type="xs:string"/>
52 <xs:element name="Date" type="xs:date"/>
54 <xs:attribute name="id" type="xs:ID" use="optional"/>
60 <xs:element name="SequenceSet">
63 <xs:element name="Sequence" maxOccurs="unbounded">
66 <xs:extension base="vamsas:SequenceType">
68 <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
70 <xs:attribute name="source"/>
71 <xs:attribute name="version"/>
72 <xs:attribute name="accessionId"/>
73 <xs:attribute name="id" type="xs:ID" use="optional"/>
77 <xs:attribute name="id" type="xs:ID" use="required"/>
78 <xs:attribute name="dictionary" type="xs:string"/>
83 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
86 <xs:element name="description" type="xs:string" minOccurs="0"/>
87 <xs:element name="status" type="xs:string" minOccurs="0"/>
88 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
89 <xs:element ref="vamsas:Provenance" minOccurs="0" maxOccurs="unbounded"/>
91 <xs:attribute name="type" type="xs:string" use="required"/>
92 <xs:attribute name="end" type="xs:string" use="required"/>
93 <xs:attribute name="begin" type="xs:string" use="required"/>
94 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
95 <xs:attribute name="id" type="xs:ID" use="optional"/>
98 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
101 <xs:element name="AlignmentAnnotations" minOccurs="0">
104 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
105 <xs:element name="label" type="xs:string"/>
106 <xs:element name="description" type="xs:string"/>
107 <xs:element ref="vamsas:Provenance"/>
109 <xs:attribute name="graph" type="xs:boolean" use="required"/>
110 <xs:attribute name="id" type="xs:ID" use="optional"/>
113 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
114 <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
117 <xs:extension base="vamsas:SequenceType">
118 <xs:attribute name="id" type="xs:ID" use="optional"/>
119 <xs:attribute name="refid" type="xs:IDREF" use="required"/>
124 <xs:element ref="vamsas:Provenance"/>
126 <xs:attribute name="gapChar" type="xs:string" use="required"/>
127 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
128 <xs:attribute name="id" type="xs:ID" use="optional"/>
131 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
132 <xs:element ref="vamsas:Provenance"/>
134 <xs:attribute name="id" type="xs:ID" use="optional"/>
137 <xs:element name="annotationElement">
140 <xs:element name="displayCharacter" type="xs:string"/>
141 <xs:element name="description" type="xs:string"/>
142 <xs:element name="secondaryStructure">
144 <xs:restriction base="xs:string">
145 <xs:length value="1"/>
149 <xs:element name="value" type="xs:float"/>
151 <xs:attribute name="position" type="xs:int" use="required"/>
152 <xs:attribute name="id" type="xs:ID" use="optional"/>
155 <xs:complexType name="SequenceType">
157 <xs:element name="sequence" type="xs:string"/>
158 <xs:element name="name" type="xs:string"/>
160 <xs:attribute name="start" type="xs:int" use="required"/>
161 <xs:attribute name="end" type="xs:int" use="required"/>
163 <xs:element name="ApplicationData">
166 <xs:element name="Application">
169 <xs:element name="User">
171 <xs:attribute name="fullname" type="xs:string"/>
172 <xs:attribute name="organization" type="xs:string"/>
173 <xs:attribute name="data" type="xs:string"/>
177 <xs:attribute name="version" type="xs:string"/>
178 <xs:attribute name="name" type="xs:string"/>
179 <xs:attribute name="urn" type="xs:string"/>
180 <xs:attribute name="data" type="xs:string"/>