1 <?xml version="1.0" encoding="UTF-8"?>
2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
5 <xs:element name="Version" type="xs:string"/>
6 <xs:complexType name="LockFile">
8 <xs:extension base="xs:string"/>
11 <xs:complexType name="VAMSAS">
13 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
14 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
16 <xs:attribute name="id" type="xs:ID"/>
18 <xs:element name="Tree">
21 <xs:element name="newickFormat" type="xs:string" minOccurs="1" maxOccurs="unbounded"/>
22 <xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
24 <xs:attribute name="id" type="xs:ID"/>
27 <xs:element name="Provenance">
29 <xs:sequence maxOccurs="unbounded">
30 <xs:element name="entry">
33 <xs:element name="User" type="xs:string"/>
34 <xs:element name="Action" type="xs:string"/>
35 <xs:element name="Date" type="xs:date"/>
37 <xs:attribute name="id" type="xs:ID"/>
43 <xs:element name="SequenceSet">
46 <xs:element name="Sequence" maxOccurs="unbounded">
49 <xs:extension base="vamsas:SequenceType">
50 <xs:attribute name="dictionary" type="xs:string"/>
55 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
58 <xs:element name="description" type="xs:string" minOccurs="0"/>
59 <xs:element name="status" type="xs:string" minOccurs="0"/>
60 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
61 <xs:element ref="vamsas:Provenance"/>
63 <xs:attribute name="type" type="xs:string" use="required"/>
64 <xs:attribute name="end" type="xs:string" use="required"/>
65 <xs:attribute name="begin" type="xs:string" use="required"/>
66 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
67 <xs:attribute name="id" type="xs:ID"/>
70 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
73 <xs:element name="AlignmentAnnotations" minOccurs="0">
76 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
77 <xs:element name="label" type="xs:string"/>
78 <xs:element name="description" type="xs:string"/>
79 <xs:element ref="vamsas:Provenance"/>
81 <xs:attribute name="graph" type="xs:boolean" use="required"/>
82 <xs:attribute name="id" type="xs:ID"/>
85 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
86 <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
89 <xs:extension base="vamsas:SequenceType">
90 <xs:attribute name="refid" type="xs:IDREF" use="required"/>
95 <xs:element ref="vamsas:Provenance"/>
99 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
100 <xs:element ref="vamsas:Provenance"/>
102 <xs:attribute name="gapChar" type="xs:string" use="required"/>
103 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
104 <xs:attribute name="id" type="xs:ID"/>
107 <xs:element name="annotationElement">
110 <xs:element name="displayCharacter" type="xs:string"/>
111 <xs:element name="description" type="xs:string"/>
112 <xs:element name="secondaryStructure">
114 <xs:restriction base="xs:string">
115 <xs:length value="1"/>
119 <xs:element name="value" type="xs:float"/>
121 <xs:attribute name="position" type="xs:int" use="required"/>
122 <xs:attribute name="id" type="xs:ID"/>
125 <xs:complexType name="SequenceType">
127 <xs:element name="sequence" type="xs:string"/>
128 <xs:element name="name" type="xs:string"/>
129 <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
131 <xs:attribute name="source"/>
132 <xs:attribute name="version"/>
133 <xs:attribute name="accessionId"/>
134 <xs:attribute name="id" type="xs:ID"/>
138 <xs:attribute name="start" type="xs:int" use="required"/>
139 <xs:attribute name="end" type="xs:int" use="required"/>
140 <xs:attribute name="id" type="xs:ID"/>
143 <xs:complexType name="ApplicationData">
145 <xs:element name="Application">
147 <xs:attribute name="version" type="xs:string"/>
148 <xs:attribute name="name" type="xs:string"/>
149 <xs:attribute name="session" type="xs:string"/>
150 <xs:attribute name="data" type="xs:string"/>