1 <?xml version="1.0" encoding="UTF-8"?>
2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
5 <xs:element name="Version" type="xs:string"/>
6 <xs:complexType name="LockFile">
8 <xs:extension base="xs:string"/>
11 <xs:complexType name="VAMSAS">
13 <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
14 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
17 <xs:element name="Provenance">
19 <xs:sequence maxOccurs="unbounded">
20 <xs:element name="entry">
23 <xs:element name="User" type="xs:string"/>
24 <xs:element name="Action" type="xs:string"/>
25 <xs:element name="Date" type="xs:date"/>
32 <xs:element name="SequenceSet">
35 <xs:element name="Sequence" maxOccurs="unbounded">
38 <xs:extension base="vamsas:SequenceType">
39 <xs:attribute name="dictionary" type="xs:string"/>
40 <xs:attribute name="id" type="xs:ID" use="required"/>
45 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
48 <xs:element name="description" type="xs:string" minOccurs="0"/>
49 <xs:element name="status" type="xs:string" minOccurs="0"/>
50 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
51 <xs:element ref="vamsas:Provenance"/>
53 <xs:attribute name="type" type="xs:string" use="required"/>
54 <xs:attribute name="end" type="xs:string" use="required"/>
55 <xs:attribute name="begin" type="xs:string" use="required"/>
56 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
59 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
62 <xs:element name="AlignmentAnnotations" minOccurs="0">
65 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
66 <xs:element name="label" type="xs:string"/>
67 <xs:element name="description" type="xs:string"/>
68 <xs:element ref="vamsas:Provenance"/>
70 <xs:attribute name="graph" type="xs:boolean" use="required"/>
73 <xs:element name="tree" minOccurs="0" maxOccurs="unbounded">
76 <xs:element ref="vamsas:Provenance"/>
77 <xs:element name="newickFormat" type="xs:string"/>
81 <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
84 <xs:extension base="vamsas:SequenceType">
85 <xs:attribute name="id" type="xs:IDREF" use="required"/>
90 <xs:element ref="vamsas:Provenance"/>
94 <xs:element name="tree">
97 <xs:element ref="vamsas:Provenance"/>
98 <xs:element name="newickFormat" type="xs:string"/>
102 <xs:element ref="vamsas:Provenance"/>
104 <xs:attribute name="gapChar" type="xs:string" use="required"/>
105 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
108 <xs:element name="annotationElement">
111 <xs:element name="displayCharacter" type="xs:string"/>
112 <xs:element name="description" type="xs:string"/>
113 <xs:element name="secondaryStructure">
115 <xs:restriction base="xs:string">
116 <xs:length value="1"/>
120 <xs:element name="value" type="xs:float"/>
122 <xs:attribute name="position" type="xs:int" use="required"/>
125 <xs:complexType name="SequenceType">
127 <xs:element name="sequence" type="xs:string"/>
128 <xs:element name="name" type="xs:string"/>
129 <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
131 <xs:attribute name="source"/>
132 <xs:attribute name="version"/>
133 <xs:attribute name="accessionId"/>
137 <xs:attribute name="start" type="xs:int" use="required"/>
138 <xs:attribute name="end" type="xs:int" use="required"/>
140 <xs:complexType name="ApplicationData">
142 <xs:element name="Application">
144 <xs:attribute name="version"/>
145 <xs:attribute name="name"/>