1 <?xml version="1.0" encoding="UTF-8"?>
2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
5 <xs:element name="Version" type="xs:string"/>
6 <xs:complexType name="LockFile">
8 <xs:extension base="xs:string"/>
11 <xs:complexType name="VAMSAS">
13 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
14 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
16 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
18 <xs:element name="Tree">
21 <xs:element name="title" type="xs:string" minOccurs="0" maxOccurs="1"/>
22 <xs:element name="newick" minOccurs="1" maxOccurs="unbounded">
25 <xs:extension base="xs:string">
26 <xs:attribute name="title" type="xs:string" minOccurs="0" maxOccurs="1"/>
27 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
32 <xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
34 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
37 <xs:element name="Provenance">
40 <xs:element name="entry" minOccurs="0" maxOccurs="unbounded">
43 <xs:element name="User" type="xs:string"/>
44 <xs:element name="Action" type="xs:string"/>
45 <xs:element name="Date" type="xs:date"/>
47 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
54 <xs:element name="SequenceSet">
57 <xs:element name="Sequence" maxOccurs="unbounded">
60 <xs:extension base="vamsas:SequenceType">
62 <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
64 <xs:attribute name="source"/>
65 <xs:attribute name="version"/>
66 <xs:attribute name="accessionId"/>
67 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
71 <xs:attribute name="id" type="xs:ID" minOccurs="1" maxOccurs="1"/>
72 <xs:attribute name="dictionary" type="xs:string"/>
77 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
80 <xs:element name="description" type="xs:string" minOccurs="0"/>
81 <xs:element name="status" type="xs:string" minOccurs="0"/>
82 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
83 <xs:element ref="vamsas:Provenance" minOccurs="0" maxOccurs="unbounded"/>
85 <xs:attribute name="type" type="xs:string" use="required"/>
86 <xs:attribute name="end" type="xs:string" use="required"/>
87 <xs:attribute name="begin" type="xs:string" use="required"/>
88 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
89 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
92 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
95 <xs:element name="AlignmentAnnotations" minOccurs="0">
98 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
99 <xs:element name="label" type="xs:string"/>
100 <xs:element name="description" type="xs:string"/>
101 <xs:element ref="vamsas:Provenance"/>
103 <xs:attribute name="graph" type="xs:boolean" use="required"/>
104 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
107 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
108 <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
111 <xs:extension base="vamsas:SequenceType">
112 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
113 <xs:attribute name="refid" type="xs:IDREF" use="required"/>
118 <xs:element ref="vamsas:Provenance"/>
120 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
123 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
124 <xs:element ref="vamsas:Provenance"/>
126 <xs:attribute name="gapChar" type="xs:string" use="required"/>
127 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
128 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
131 <xs:element name="annotationElement">
134 <xs:element name="displayCharacter" type="xs:string"/>
135 <xs:element name="description" type="xs:string"/>
136 <xs:element name="secondaryStructure">
138 <xs:restriction base="xs:string">
139 <xs:length value="1"/>
143 <xs:element name="value" type="xs:float"/>
145 <xs:attribute name="position" type="xs:int" use="required"/>
146 <xs:attribute name="id" type="xs:ID" minOccurs="0" maxOccurs="1"/>
149 <xs:complexType name="SequenceType">
151 <xs:element name="sequence" type="xs:string"/>
152 <xs:element name="name" type="xs:string"/>
154 <xs:attribute name="start" type="xs:int" use="required"/>
155 <xs:attribute name="end" type="xs:int" use="required"/>
158 <xs:complexType name="ApplicationData">
160 <xs:element name="Application">
163 <xs:element name="User">
165 <xs:attribute name="fullname" type="xs:string"/>
166 <xs:attribute name="organization" type="xs:string"/>
167 <xs:attribute name="data" type="xs:string"/>
171 <xs:attribute name="version" type="xs:string"/>
172 <xs:attribute name="name" type="xs:string"/>
173 <xs:attribute name="urn" type="xs:string"/>
174 <xs:attribute name="data" type="xs:string"/>