1 <?xml version="1.0" encoding="UTF-8"?>
2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
5 <xs:element name="Version" type="xs:string"/>
6 <xs:complexType name="LockFile">
8 <xs:extension base="xs:string"/>
11 <xs:complexType name="VAMSAS">
13 <xs:element name="Dendro" type="vamsas:TreeType" minOccurs="0" maxOccurs="unbounded"/>
14 <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
17 <xs:attribute name="id" type="xs:ID"/>
19 <xs:element name="Provenance">
21 <xs:sequence maxOccurs="unbounded">
22 <xs:element name="entry">
25 <xs:element name="User" type="xs:string"/>
26 <xs:element name="Action" type="xs:string"/>
27 <xs:element name="Date" type="xs:date"/>
29 <xs:attribute name="id" type="xs:ID"/>
35 <xs:element name="SequenceSet">
38 <xs:element name="Sequence" maxOccurs="unbounded">
41 <xs:extension base="vamsas:SequenceType">
42 <xs:attribute name="dictionary" type="xs:string"/>
47 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
50 <xs:element name="description" type="xs:string" minOccurs="0"/>
51 <xs:element name="status" type="xs:string" minOccurs="0"/>
52 <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
53 <xs:element ref="vamsas:Provenance"/>
55 <xs:attribute name="type" type="xs:string" use="required"/>
56 <xs:attribute name="end" type="xs:string" use="required"/>
57 <xs:attribute name="begin" type="xs:string" use="required"/>
58 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
59 <xs:attribute name="id" type="xs:ID"/>
62 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
65 <xs:element name="AlignmentAnnotations" minOccurs="0">
68 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
69 <xs:element name="label" type="xs:string"/>
70 <xs:element name="description" type="xs:string"/>
71 <xs:element ref="vamsas:Provenance"/>
73 <xs:attribute name="graph" type="xs:boolean" use="required"/>
74 <xs:attribute name="id" type="xs:ID"/>
77 <xs:element name="tree" type="vamsas:TreeType" minOccurs="0" maxOccurs="unbounded"/>
78 <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
81 <xs:extension base="vamsas:SequenceType">
82 <xs:attribute name="refid" type="xs:IDREF" use="required"/>
87 <xs:element ref="vamsas:Provenance"/>
91 <xs:element name="tree" type="vamsas:TreeType"/>
92 <xs:element ref="vamsas:Provenance"/>
94 <xs:attribute name="gapChar" type="xs:string" use="required"/>
95 <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
96 <xs:attribute name="id" type="xs:ID"/>
99 <xs:element name="annotationElement">
102 <xs:element name="displayCharacter" type="xs:string"/>
103 <xs:element name="description" type="xs:string"/>
104 <xs:element name="secondaryStructure">
106 <xs:restriction base="xs:string">
107 <xs:length value="1"/>
111 <xs:element name="value" type="xs:float"/>
113 <xs:attribute name="position" type="xs:int" use="required"/>
114 <xs:attribute name="id" type="xs:ID"/>
117 <xs:complexType name="SequenceType">
119 <xs:element name="sequence" type="xs:string"/>
120 <xs:element name="name" type="xs:string"/>
121 <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
123 <xs:attribute name="source"/>
124 <xs:attribute name="version"/>
125 <xs:attribute name="accessionId"/>
126 <xs:attribute name="id" type="xs:ID"/>
130 <xs:attribute name="start" type="xs:int" use="required"/>
131 <xs:attribute name="end" type="xs:int" use="required"/>
132 <xs:attribute name="id" type="xs:ID"/>
135 <xs:complexType name="TreeType">
137 <xs:element name="newickFormat" type="xs:string" minOccurs="1" maxOccurs="unbounded"/>
138 <xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
140 <xs:attribute name="id" type="xs:ID"/>
142 <xs:complexType name="ApplicationData">
144 <xs:element name="Application">
146 <xs:attribute name="version" type="xs:string"/>
147 <xs:attribute name="name" type="xs:string"/>
148 <xs:attribute name="session" type="xs:string"/>
149 <xs:attribute name="data" type="xs:string"/>