1 /* Copyright (c) 2009 Peter Troshin
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3 * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
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5 * This library is free software; you can redistribute it and/or modify it under the terms of the
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6 * Apache License version 2 as published by the Apache Software Foundation
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8 * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
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9 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache
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10 * License for more details.
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12 * A copy of the license is in apache_license.txt. It is also available here:
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13 * @see: http://www.apache.org/licenses/LICENSE-2.0.txt
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15 * Any republication or derived work distributed in source code form
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16 * must include this copyright and license notice.
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19 package compbio.data.sequence;
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21 import static org.testng.AssertJUnit.assertEquals;
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22 import static org.testng.AssertJUnit.assertTrue;
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24 import java.util.List;
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26 import org.testng.annotations.Test;
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28 public class FastaSequenceGeneratorTester {
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31 public void testProteinSequenceGeneration() {
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32 FastaSequenceGenerator fs = new FastaSequenceGenerator(
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33 FastaSequenceGenerator.SeqType.PROTEIN, 100);
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34 assertEquals(100, fs.generateFasta(100).size());
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36 fs = new FastaSequenceGenerator(FastaSequenceGenerator.SeqType.DNA, 50);
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37 List<FastaSequence> flist = fs.generateFasta(100);
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38 assertEquals(50, flist.size());
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39 for (FastaSequence s : flist) {
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40 assertTrue(s.getLength() >= 50);
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