1 package compbio.controllers;
6 import org.springframework.stereotype.Controller;
7 import org.springframework.web.bind.annotation.RequestMapping;
8 import org.springframework.web.bind.annotation.RequestMethod;
9 import org.springframework.web.bind.annotation.RequestParam;
11 import compbio.cassandra.DataBase;
13 import compbio.statistic.CassandraRequester;
16 * @author Alexander Sherstnev
17 * @author Natasha Sherstneva
20 public class SequenceSearchController {
22 @RequestMapping(value = "/sequence/query1", method = RequestMethod.GET)
23 public String formSequenceQuery(Map<String, Object> model) {
24 return "queryProteinSequence";
27 @RequestMapping(value = "/sequence/query2", method = RequestMethod.GET)
28 public String formCounterQuery(Map<String, Object> model) {
29 return "queryProteinSequenceCounter";
32 @RequestMapping(value = "/sequence/querysequence", method = RequestMethod.GET)
33 public String findSequence(@RequestParam("sequence") String sequence, @RequestParam("protein") String flag, Map<String, Object> model) {
34 final long startTime = System.currentTimeMillis();
36 String trimmedsequence = sequence.replaceAll("\\s", "");
37 model.put("njobs", 0);
38 model.put("prot", trimmedsequence);
39 model.put("flag", flag);
41 if (0 < trimmedsequence.length()) {
42 CassandraRequester cr = new CassandraRequester();
43 List<DataBase> r = cr.readProteins(trimmedsequence, flag);
44 model.put("results", r);
46 System.out.println("result size = " + r.size());
47 model.put("njobs", r.size());
50 final long endTime = System.currentTimeMillis();
51 model.put("timeExecution", (endTime - startTime));
52 return "reportProteinSequences";
55 @RequestMapping(value = "/sequence/querycounter", method = RequestMethod.GET)
56 public String countSequences(@RequestParam("counterJob") int counter, Map<String, Object> model) {
57 final long startTime = System.currentTimeMillis();
59 CassandraRequester cr = new CassandraRequester();
60 List<DataBase> r = cr.readProteinByCounter(counter);
61 model.put("results", r);
62 model.put("njobs", 0);
64 model.put("njobs", r.size());
66 final long endTime = System.currentTimeMillis();
67 model.put("timeExecution", (endTime - startTime));
68 model.put("counter", counter);
69 return "reportProteinSequencesCounter";