server/compbio/controllers/SequenceSearchController.java

   1
   2 package compbio.controllers;
   3
   4
   5 import java.util.List;
   6 import java.util.Map;
   7
   8 import org.springframework.beans.factory.annotation.Autowired;
   9 import org.springframework.stereotype.Controller;
  10 import org.springframework.validation.BindingResult;
  11 import org.springframework.web.bind.WebDataBinder;
  12 import org.springframework.web.bind.annotation.InitBinder;
  13 import org.springframework.web.bind.annotation.ModelAttribute;
  14 import org.springframework.web.bind.annotation.PathVariable;
  15 import org.springframework.web.bind.annotation.RequestMapping;
  16 import org.springframework.web.bind.annotation.RequestMethod;
  17 import org.springframework.web.bind.annotation.RequestParam;
  18
  19 import compbio.cassandra.DataBase;
  20
  21 import compbio.statistic.CassandraRequester;
  22
  23 /**
  24  * @author Alexander Sherstnev
  25  * @author Natasha Sherstneva
  26  */
  27 @Controller
  28 public class SequenceSearchController {
  29
  30         @RequestMapping(value = "/sequence", method = RequestMethod.GET)
  31         public String initFindForm(Map<String, Object> model) {
  32                 return "QuerySequenceProtein";
  33         }
  34
  35         @RequestMapping(value = "/sequence/query", method = RequestMethod.GET)
  36         public String findSequence(@RequestParam("prot") String prot, @RequestParam("protein") String flag,
  37                         @RequestParam("Search") String search, @RequestParam("counterJob") int counter, Map<String, Object> model) {
  38                 final long startTime = System.currentTimeMillis();
  39                 CassandraRequester cr = new CassandraRequester();
  40                 if (search.equals("SearchCounter")) {
  41                         List<DataBase> r = cr.readProteinByCounter(counter);
  42                         model.put("results", r);
  43                         model.put("njobs", r.size());
  44                         System.out.println("Search counter = " + counter + ": " + r.size() + " proteins found");
  45                 } else {
  46                         List<DataBase> r = cr.readProteins(prot, flag);
  47                         model.put("results", r);
  48                         model.put("njobs", r.size());
  49                         //System.out.println("Search sequence: " + r.size() + " proteins found");
  50                 }
  51                 final long endTime = System.currentTimeMillis();
  52                 model.put("timeExecution", (endTime - startTime));
  53                 model.put("prot", prot);
  54                 model.put("flag", flag);
  55                 model.put("search", search);
  56                 model.put("counter", counter);
  57                 return "ReportSequenceProtein";
  58         }
  59
  60 }