1 Clazz.declarePackage ("jalview.appletgui");
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2 Clazz.load (["awt2swing.Panel", "java.awt.event.ActionListener", "$.AdjustmentListener", "$.MouseListener", "awt2swing.Button", "$.Checkbox", "$.Label", "$.Scrollbar", "$.TextField", "java.awt.BorderLayout", "$.FlowLayout"], "jalview.appletgui.SliderPanel", ["awt2swing.Frame", "jalview.bin.JalviewLite", "jalview.util.MessageManager", "java.awt.Color", "$.Font", "java.awt.event.WindowAdapter"], function () {
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3 c$ = Clazz.decorateAsClass (function () {
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5 this.forConservation = true;
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8 this.valueField = null;
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10 this.jPanel1 = null;
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11 this.jPanel2 = null;
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12 this.applyButton = null;
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13 this.undoButton = null;
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14 this.flowLayout1 = null;
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15 this.allGroupsCheck = null;
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16 this.borderLayout1 = null;
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17 this.borderLayout2 = null;
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18 this.flowLayout2 = null;
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19 Clazz.instantialize (this, arguments);
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20 }, jalview.appletgui, "SliderPanel", awt2swing.Panel, [java.awt.event.ActionListener, java.awt.event.AdjustmentListener, java.awt.event.MouseListener]);
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21 Clazz.prepareFields (c$, function () {
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22 this.slider = new awt2swing.Scrollbar ();
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23 this.valueField = new awt2swing.TextField ();
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24 this.label = new awt2swing.Label ();
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25 this.jPanel1 = new awt2swing.Panel ();
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26 this.jPanel2 = new awt2swing.Panel ();
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27 this.applyButton = new awt2swing.Button ();
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28 this.undoButton = new awt2swing.Button ();
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29 this.flowLayout1 = new java.awt.FlowLayout ();
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30 this.allGroupsCheck = new awt2swing.Checkbox ();
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31 this.borderLayout1 = new java.awt.BorderLayout ();
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32 this.borderLayout2 = new java.awt.BorderLayout ();
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33 this.flowLayout2 = new java.awt.FlowLayout ();
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35 c$.setConservationSlider = Clazz.defineMethod (c$, "setConservationSlider",
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36 function (ap, cs, source) {
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38 if (jalview.appletgui.SliderPanel.conservationSlider == null) {
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39 sp = new jalview.appletgui.SliderPanel (ap, cs.getConservationInc (), true, cs);
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40 jalview.appletgui.SliderPanel.conservationSlider = new awt2swing.Frame ();
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41 jalview.appletgui.SliderPanel.conservationSlider.add (sp);
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43 sp = jalview.appletgui.SliderPanel.conservationSlider.getComponent (0);
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45 }jalview.appletgui.SliderPanel.conservationSlider.setTitle (jalview.util.MessageManager.formatMessage ("label.conservation_colour_increment", Clazz.newArray (-1, [source])));
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46 if (ap.av.getAlignment ().getGroups () != null) {
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47 sp.setAllGroupsCheckEnabled (true);
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49 sp.setAllGroupsCheckEnabled (false);
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50 }return sp.getValue ();
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51 }, "jalview.appletgui.AlignmentPanel,jalview.schemes.ColourSchemeI,~S");
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52 c$.showConservationSlider = Clazz.defineMethod (c$, "showConservationSlider",
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55 jalview.appletgui.SliderPanel.PIDSlider.setVisible (false);
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56 jalview.appletgui.SliderPanel.PIDSlider = null;
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58 if (Clazz.exceptionOf (ex, Exception)) {
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63 if (!jalview.appletgui.SliderPanel.conservationSlider.isVisible ()) {
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64 jalview.bin.JalviewLite.addFrame (jalview.appletgui.SliderPanel.conservationSlider, jalview.appletgui.SliderPanel.conservationSlider.getTitle (), 420, 100);
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65 jalview.appletgui.SliderPanel.conservationSlider.addWindowListener (((Clazz.isClassDefined ("jalview.appletgui.SliderPanel$1") ? 0 : jalview.appletgui.SliderPanel.$SliderPanel$1$ ()), Clazz.innerTypeInstance (jalview.appletgui.SliderPanel$1, this, null)));
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67 c$.setPIDSliderSource = Clazz.defineMethod (c$, "setPIDSliderSource",
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68 function (ap, cs, source) {
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70 if (jalview.appletgui.SliderPanel.PIDSlider == null) {
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71 pid = new jalview.appletgui.SliderPanel (ap, 50, false, cs);
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72 jalview.appletgui.SliderPanel.PIDSlider = new awt2swing.Frame ();
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73 jalview.appletgui.SliderPanel.PIDSlider.add (pid);
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75 pid = jalview.appletgui.SliderPanel.PIDSlider.getComponent (0);
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77 }jalview.appletgui.SliderPanel.PIDSlider.setTitle (jalview.util.MessageManager.formatMessage ("label.percentage_identity_thereshold", Clazz.newArray (-1, [source])));
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78 if (ap.av.getAlignment ().getGroups () != null) {
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79 pid.setAllGroupsCheckEnabled (true);
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81 pid.setAllGroupsCheckEnabled (false);
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82 }return pid.getValue ();
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83 }, "jalview.appletgui.AlignmentPanel,jalview.schemes.ColourSchemeI,~S");
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84 c$.showPIDSlider = Clazz.defineMethod (c$, "showPIDSlider",
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87 jalview.appletgui.SliderPanel.conservationSlider.setVisible (false);
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88 jalview.appletgui.SliderPanel.conservationSlider = null;
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90 if (Clazz.exceptionOf (ex, Exception)) {
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95 if (!jalview.appletgui.SliderPanel.PIDSlider.isVisible ()) {
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96 jalview.bin.JalviewLite.addFrame (jalview.appletgui.SliderPanel.PIDSlider, jalview.appletgui.SliderPanel.PIDSlider.getTitle (), 420, 100);
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97 jalview.appletgui.SliderPanel.PIDSlider.addWindowListener (((Clazz.isClassDefined ("jalview.appletgui.SliderPanel$2") ? 0 : jalview.appletgui.SliderPanel.$SliderPanel$2$ ()), Clazz.innerTypeInstance (jalview.appletgui.SliderPanel$2, this, null)));
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99 Clazz.makeConstructor (c$,
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100 function (ap, value, forConserve, cs) {
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101 Clazz.superConstructor (this, jalview.appletgui.SliderPanel, []);
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105 if (Clazz.exceptionOf (e, Exception)) {
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106 e.printStackTrace ();
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113 this.forConservation = forConserve;
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114 this.undoButton.setVisible (false);
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115 this.applyButton.setVisible (false);
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116 if (this.forConservation) {
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117 this.label.setText (jalview.util.MessageManager.getString ("label.modify_conservation_visibility"));
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118 this.slider.setMinimum (0);
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119 this.slider.setMaximum (50 + this.slider.getVisibleAmount ());
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120 this.slider.setUnitIncrement (1);
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122 this.label.setText (jalview.util.MessageManager.getString ("label.colour_residues_above_occurence"));
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123 this.slider.setMinimum (0);
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124 this.slider.setMaximum (100 + this.slider.getVisibleAmount ());
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125 this.slider.setBlockIncrement (1);
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126 }this.slider.addAdjustmentListener (this);
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127 this.slider.addMouseListener (this);
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128 this.slider.setValue (value);
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129 this.valueField.setText (value + "");
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130 }, "jalview.appletgui.AlignmentPanel,~N,~B,jalview.schemes.ColourSchemeI");
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131 Clazz.defineMethod (c$, "valueChanged",
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133 if (this.cs == null) {
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135 }var toChange = this.cs;
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136 var allGroups = null;
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137 if (this.allGroupsCheck.getState ()) {
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138 allGroups = this.ap.av.getAlignment ().getGroups ().listIterator ();
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139 }while (toChange != null) {
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140 if (this.forConservation) {
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141 toChange.setConservationInc (i);
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143 toChange.setThreshold (i, this.ap.av.isIgnoreGapsConsensus ());
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144 }if (allGroups != null && allGroups.hasNext ()) {
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145 while ((toChange = allGroups.next ().cs) == null && allGroups.hasNext ()) {
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150 this.ap.seqPanel.seqCanvas.repaint ();
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152 Clazz.defineMethod (c$, "setAllGroupsCheckEnabled",
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154 this.allGroupsCheck.setEnabled (b);
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156 Clazz.overrideMethod (c$, "actionPerformed",
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158 if (evt.getSource () === this.applyButton) {
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159 this.applyButton_actionPerformed ();
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160 } else if (evt.getSource () === this.undoButton) {
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161 this.undoButton_actionPerformed ();
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162 } else if (evt.getSource () === this.valueField) {
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163 this.valueField_actionPerformed ();
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164 }}, "java.awt.event.ActionEvent");
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165 Clazz.overrideMethod (c$, "adjustmentValueChanged",
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167 this.valueField.setText (this.slider.getValue () + "");
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168 this.valueChanged (this.slider.getValue ());
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169 }, "java.awt.event.AdjustmentEvent");
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170 Clazz.defineMethod (c$, "valueField_actionPerformed",
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173 var i = Integer.parseInt (this.valueField.getText ());
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174 this.slider.setValue (i);
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176 if (Clazz.exceptionOf (ex, Exception)) {
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177 this.valueField.setText (this.slider.getValue () + "");
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183 Clazz.defineMethod (c$, "setValue",
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185 this.slider.setValue (value);
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187 Clazz.defineMethod (c$, "getValue",
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189 return Integer.parseInt (this.valueField.getText ());
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191 Clazz.defineMethod (c$, "jbInit",
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193 this.setLayout (this.borderLayout2);
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194 this.slider.setBackground (java.awt.Color.white);
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195 this.slider.setFont ( new java.awt.Font ("Verdana", 0, 11));
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196 this.slider.setOrientation (0);
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197 this.valueField.setFont ( new java.awt.Font ("Verdana", 0, 11));
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198 this.valueField.setText (" ");
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199 this.valueField.addActionListener (this);
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200 this.valueField.setColumns (3);
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201 this.label.setFont ( new java.awt.Font ("Verdana", 0, 11));
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202 this.label.setText (jalview.util.MessageManager.getString ("label.set_this_label_text"));
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203 this.jPanel1.setLayout (this.borderLayout1);
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204 this.jPanel2.setLayout (this.flowLayout1);
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205 this.applyButton.setFont ( new java.awt.Font ("Verdana", 0, 11));
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206 this.applyButton.setLabel (jalview.util.MessageManager.getString ("action.apply"));
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207 this.applyButton.addActionListener (this);
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208 this.undoButton.setEnabled (false);
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209 this.undoButton.setFont ( new java.awt.Font ("Verdana", 0, 11));
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210 this.undoButton.setLabel (jalview.util.MessageManager.getString ("action.undo"));
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211 this.undoButton.addActionListener (this);
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212 this.allGroupsCheck.setEnabled (false);
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213 this.allGroupsCheck.setFont ( new java.awt.Font ("Verdana", 0, 11));
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214 this.allGroupsCheck.setLabel (jalview.util.MessageManager.getString ("action.apply_threshold_all_groups"));
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215 this.allGroupsCheck.setName (jalview.util.MessageManager.getString ("action.apply_all_groups"));
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216 this.setBackground (java.awt.Color.white);
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217 this.setForeground (java.awt.Color.black);
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218 this.jPanel2.add (this.label, null);
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219 this.jPanel2.add (this.applyButton, null);
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220 this.jPanel2.add (this.undoButton, null);
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221 this.jPanel2.add (this.allGroupsCheck);
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222 this.jPanel1.add (this.valueField, "East");
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223 this.jPanel1.add (this.slider, "Center");
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224 this.add (this.jPanel1, "South");
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225 this.add (this.jPanel2, "Center");
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227 Clazz.defineMethod (c$, "applyButton_actionPerformed",
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230 Clazz.defineMethod (c$, "undoButton_actionPerformed",
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233 Clazz.overrideMethod (c$, "mousePressed",
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235 }, "java.awt.event.MouseEvent");
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236 Clazz.overrideMethod (c$, "mouseReleased",
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238 this.ap.paintAlignment (true);
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239 }, "java.awt.event.MouseEvent");
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240 Clazz.overrideMethod (c$, "mouseClicked",
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242 }, "java.awt.event.MouseEvent");
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243 Clazz.overrideMethod (c$, "mouseEntered",
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245 }, "java.awt.event.MouseEvent");
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246 Clazz.overrideMethod (c$, "mouseExited",
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248 }, "java.awt.event.MouseEvent");
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249 c$.$SliderPanel$1$ = function () {
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250 Clazz.pu$h(self.c$);
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251 c$ = Clazz.declareAnonymous (jalview.appletgui, "SliderPanel$1", java.awt.event.WindowAdapter);
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252 Clazz.overrideMethod (c$, "windowClosing",
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254 jalview.appletgui.SliderPanel.conservationSlider = null;
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255 }, "java.awt.event.WindowEvent");
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258 c$.$SliderPanel$2$ = function () {
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259 Clazz.pu$h(self.c$);
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260 c$ = Clazz.declareAnonymous (jalview.appletgui, "SliderPanel$2", java.awt.event.WindowAdapter);
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261 Clazz.overrideMethod (c$, "windowClosing",
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263 jalview.appletgui.SliderPanel.PIDSlider = null;
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264 }, "java.awt.event.WindowEvent");
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267 Clazz.defineStatics (c$,
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268 "conservationSlider", null,
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269 "PIDSlider", null);
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