1 Clazz.declarePackage ("jalview.datamodel");
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2 Clazz.load (["jalview.datamodel.CigarSimple"], "jalview.datamodel.CigarCigar", null, function () {
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3 c$ = Clazz.decorateAsClass (function () {
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4 this.refCigar = null;
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5 Clazz.instantialize (this, arguments);
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6 }, jalview.datamodel, "CigarCigar", jalview.datamodel.CigarSimple);
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7 Clazz.makeConstructor (c$,
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9 Clazz.superConstructor (this, jalview.datamodel.CigarCigar);
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10 this.refCigar = cigar;
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11 }, "jalview.datamodel.SeqCigar");
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12 Clazz.overrideMethod (c$, "getSequenceString",
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13 function (GapChar) {
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14 if (this.length == 0) {
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16 }var refString = this.refCigar.getSequenceString (GapChar);
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17 if (refString != null) {
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18 return (this.length == 0) ? "" : this.getSequenceAndDeletions (refString, GapChar)[0];
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