1 Clazz.declarePackage ("jalview.datamodel");
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2 c$ = Clazz.declareType (jalview.datamodel, "DBRefSource");
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3 Clazz.defineStatics (c$,
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4 "UNIPROT", "UNIPROT");
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5 c$.UP_NAME = c$.prototype.UP_NAME = "UNIPROT_NAME".toUpperCase ();
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6 c$.UNIPROTKB = c$.prototype.UNIPROTKB = "UniProtKB/TrEMBL".toUpperCase ();
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7 c$.EMBLCDSProduct = c$.prototype.EMBLCDSProduct = "EMBLCDSProtein".toUpperCase ();
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8 Clazz.defineStatics (c$,
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11 "EMBLCDS", "EMBLCDS",
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14 c$.GENEDB = c$.prototype.GENEDB = "GeneDB".toUpperCase ();
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15 c$.DNACODINGDBS = c$.prototype.DNACODINGDBS = Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBL, jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
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16 c$.CODINGDBS = c$.prototype.CODINGDBS = Clazz.newArray (-1, [jalview.datamodel.DBRefSource.EMBLCDS, jalview.datamodel.DBRefSource.GENEDB]);
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17 c$.PROTEINDBS = c$.prototype.PROTEINDBS = Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.PDB, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
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18 c$.PROTEINSEQ = c$.prototype.PROTEINSEQ = Clazz.newArray (-1, [jalview.datamodel.DBRefSource.UNIPROT, jalview.datamodel.DBRefSource.UNIPROTKB, jalview.datamodel.DBRefSource.EMBLCDSProduct]);
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19 c$.PROTEINSTR = c$.prototype.PROTEINSTR = Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PDB]);
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20 c$.DOMAINDBS = c$.prototype.DOMAINDBS = Clazz.newArray (-1, [jalview.datamodel.DBRefSource.PFAM, jalview.datamodel.DBRefSource.RFAM]);
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21 Clazz.defineStatics (c$,
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24 "PROTSEQDB", "PROTSQ",
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25 "CODINGSEQDB", "CODING",
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26 "DNACODINGSEQDB", "XONCODING",
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27 "DOMAINDB", "DOMAIN",
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28 "MULTIACC", "MULTIACC",
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29 "ALIGNMENTDB", "ALIGNMENTS");
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