2 # The version numbering scheme will be <major code revisions>.<updated training data>.<updated database/bug fixes>
4 purpose "A consensus neural network protein secondary structure prediction method\n- Trained with SCOP 1.75 data and UniRef90 release 15.4"
6 # These are the data input parameters - only hmmer is required
7 option "hmmer" H "HMMER profile" string typestr="filename" required
8 option "pssm" p "PSIBLAST PSSM" string typestr="filename" optional
10 # Additional option for redirecting some output info into stderr
11 option "test" T "Flag for test style output" flag off
13 # Program output, mutually exclusive
14 defgroup "output" groupdesc="Output options"
15 groupoption "concise" - "concise output (default)" group="output"
16 groupoption "human" - "human readable output. Optionally, can take a width argument [default: 60]" int group="output" argoptional