2 Input file is murine.seq
5 The probability cutoff for the coiled-coil locater is 0.50.
6 The scoring distances are:
7 For dimeric table: 2 3 4
8 For trimeric table: 1 2 3
12 Moloney murine leukemia virus, complete genome. env polyprotein,
13 Maximum coiled-coil residue probability: 0.988 in position 538.
14 Maximum dimeric residue probability: 0.059 in position 503.
15 Maximum trimeric residue probability: 0.967 in position 531.
18 Res 1 0123456789012345678901234567890123456789012345678901234567890123456789
19 Sequence MARSTLSKPLKNKVNPRGPLIPLILLMLRGVSTASPGSSPHQVYNITWEVTNGDRETVWATSGNHPLWTW
20 Dimer ......................................................................
21 Trimer ......................................................................
22 Coil ......................................................................
24 Res 71 0123456789012345678901234567890123456789012345678901234567890123456789
25 Sequence WPDLTPDLCMLAHHGPSYWGLEYQSPFSSPPGPPCCSGGSSPGCSRDCEEPLTSLTPRCNTAWNRLKLDQ
26 Dimer ......................................................................
27 Trimer ......................................................................
28 Coil ......................................................................
30 Res 141 0123456789012345678901234567890123456789012345678901234567890123456789
31 Sequence TTHKSNEGFYVCPGPHRPRESKSCGGPDSFYCAYWGCETTGRAYWKPSSSWDFITVNNNLTSDQAVQVCK
32 Dimer ......................................................................
33 Trimer ......................................................................
34 Coil ......................................................................
36 Res 211 0123456789012345678901234567890123456789012345678901234567890123456789
37 Sequence DNKWCNPLVIRFTDAGRRVTSWTTGHYWGLRLYVSGQDPGLTFGIRLRYQNLGPRVPIGPNPVLADQQPL
38 Dimer ......................................................................
39 Trimer ......................................................................
40 Coil ......................................................................
42 Res 281 0123456789012345678901234567890123456789012345678901234567890123456789
43 Sequence SKPKPVKSPSVTKPPSGTPLSPTQLPPAGTENRLLNLVDGAYQALNLTSPDKTQECWLCLVAGPPYYEGV
44 Dimer ......................................................................
45 Trimer ......................................................................
46 Coil ......................................................................
48 Res 351 0123456789012345678901234567890123456789012345678901234567890123456789
49 Sequence AVLGTYSNHTSAPANCSVASQHKLTLSEVTGQGLCIGAVPKTHQALCNTTQTSSRGSYYLVAPTGTMWAC
50 Dimer ......................................................................
51 Trimer ......................................................................
52 Coil ......................................................................
54 Res 421 0123456789012345678901234567890123456789012345678901234567890123456789
55 Sequence STGLTPCISTTILNLTTDYCVLVELWPRVTYHSPSYVYGLFERSNRHKREPVSLTLALLLGGLTMGGIAA
56 Dimer ......................................................................
57 Trimer ......................................................................
58 Coil ......................................................................
60 Res 491 0123456789012345678901234567890123456789012345678901234567890123456789
61 Sequence GIGTGTTALMATQQFQQLQAAVQDDLREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLKEGGLCAALKE
62 Dimer ......................................................................
63 Trimer ..........gabcdefgabcdefgabcdefgabcdefgabcdefgabcdefgabcd.............
64 Coil ..........gabcdefgabcdefgabcdefgabcdefgabcdefgabcdefgabcd.............
66 Res 561 0123456789012345678901234567890123456789012345678901234567890123456789
67 Sequence ECCFYADHTGLVRDSMAKLRERLNQRQKLFESTQGWFEGLFNRSPWFTTLISTIMGPLIVLLMILLFGPC
68 Dimer ......................................................................
69 Trimer ......................................................................
70 Coil ......................................................................
72 Res 631 01234567890123456789012345678901234
73 Sequence ILNRLVQFVKDRISVVQALVLTQQYHQLKPIEYEP
74 Dimer ...................................
75 Trimer ...................................
76 Coil ...................................
79 Trim 0.93@ 501- 547:g,3
80 Coil 0.96@ 501- 547:g,3