9 our @EXPORT_OK = qw(pairwise);
10 our $VERSION = '0.01';
13 XSLoader::load('Pairwise', $VERSION);
20 Pairwise - Perl extension for doing pairwise comparisons of sequences
24 use Pairwise qw(pairwise);
25 open my $fh "fasta_file" or die $!;
27 my ($number, @distances) = pairwise $fh;
28 my @ids = splice 0, $number, @distances;
32 Gives various C based methods for pairwise comparison and identity scores between two sequences.
36 This module implements a C based pairwise comparison algorithim for biological sequences. Gaps in the input sequences should be represented as "-" characters. The sequences should be in FASTA format.
44 http://www.compbio.dundee.ac.uk
48 Jonathan Barber <jon@compbio.dundee.ac.uk>
50 =head1 COPYRIGHT AND LICENSE
52 Copyright 2003 by Jonathan Barber <jon@compbio.dundee.ac.uk>
54 This library is free software; you can redistribute it and/or modify
55 it under the same terms as Perl itself.