2 $!VAX-VMS cc make file for readseq
4 $ echo := write sys$output
5 $ if p1.eqs."TEST" then goto tests
7 $ echo "compiling readseq..."
10 $ echo "linking readseq..."
11 $ link readseq, ureadseq, sys$library:vaxcrtl/lib
15 $ echo "defining readseq symbol:"
16 $ dd = f$environment("default")
17 $ readseq :== $ 'dd'readseq.exe
21 $ echo "test for general read/write of all chars:"
22 $ readseq -p alphabet.std -otest.alpha
23 $ diff test.alpha alphabet.std
26 $ echo "test for valid format conversions"
28 $ readseq -v -p -f=ig nucleic.std -otest.ig
29 $ readseq -v -p -f=gb test.ig -otest.gb
30 $ readseq -v -p -f=nbrf test.gb -otest.nbrf
31 $ readseq -v -p -f=embl test.nbrf -otest.embl
32 $ readseq -v -p -f=gcg test.embl -otest.gcg
33 $ readseq -v -p -f=strider test.gcg -otest.strider
34 $ readseq -v -p -f=fitch test.strider -otest.fitch
35 $ readseq -v -p -f=fasta test.fitch -otest.fasta
36 $ readseq -v -p -f=pir test.fasta -otest.pir
37 $ readseq -v -p -f=ig test.pir -otest.ig-b
38 $ diff test.ig test.ig-b
41 $ echo "Test for multiple-sequence format conversions:"
42 $ readseq -p -f=ig multi.std -otest.m-ig
43 $ readseq -p -f=gb test.m-ig -otest.m-gb
44 $ readseq -p -f=nbrf test.m-gb -otest.m-nbrf
45 $ readseq -p -f=embl test.m-nbrf -otest.m-embl
46 $ readseq -p -f=fasta test.m-embl -otest.m-fasta
47 $ readseq -p -f=pir test.m-fasta -otest.m-pir
48 $ readseq -p -f=msf test.m-pir -otest.m-msf
49 $ readseq -p -f=paup test.m-msf -otest.m-paup
50 $ readseq -p -f=ig test.m-paup -otest.m-ig-b
51 $ diff test.m-ig test.m-ig-b
53 $ echo "Expect differences in the header lines due to"
54 $ echo "different format headers. If any sequence lines"
55 $ echo "differ, or if checksums differ, there is a problem."
61 $ echo "To clean up test files, command me:
62 $ echo " DELETE test.*;"