2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 public class JpredSoapBindingStub extends org.apache.axis.client.Stub
22 implements ext.vamsas.Jpred
24 private java.util.Vector cachedSerClasses = new java.util.Vector();
26 private java.util.Vector cachedSerQNames = new java.util.Vector();
28 private java.util.Vector cachedSerFactories = new java.util.Vector();
30 private java.util.Vector cachedDeserFactories = new java.util.Vector();
32 static org.apache.axis.description.OperationDesc[] _operations;
36 _operations = new org.apache.axis.description.OperationDesc[4];
37 _initOperationDesc1();
40 private static void _initOperationDesc1()
42 org.apache.axis.description.OperationDesc oper;
43 oper = new org.apache.axis.description.OperationDesc();
44 oper.setName("predict");
45 oper.addParameter(new javax.xml.namespace.QName("", "seq"),
46 new javax.xml.namespace.QName("simple.objects.vamsas",
47 "Sequence"), vamsas.objects.simple.Sequence.class,
48 org.apache.axis.description.ParameterDesc.IN, false, false);
49 oper.setReturnType(new javax.xml.namespace.QName(
50 "http://www.w3.org/2001/XMLSchema", "string"));
51 oper.setReturnClass(java.lang.String.class);
52 oper.setReturnQName(new javax.xml.namespace.QName("", "predictReturn"));
53 oper.setStyle(org.apache.axis.constants.Style.RPC);
54 oper.setUse(org.apache.axis.constants.Use.ENCODED);
55 _operations[0] = oper;
57 oper = new org.apache.axis.description.OperationDesc();
58 oper.setName("predictOnMsa");
59 oper.addParameter(new javax.xml.namespace.QName("", "msf"),
60 new javax.xml.namespace.QName("http://simple.objects.vamsas",
62 vamsas.objects.simple.Msfalignment.class,
63 org.apache.axis.description.ParameterDesc.IN, false, false);
64 oper.setReturnType(new javax.xml.namespace.QName(
65 "http://www.w3.org/2001/XMLSchema", "string"));
66 oper.setReturnClass(java.lang.String.class);
67 oper.setReturnQName(new javax.xml.namespace.QName("",
68 "predictOnMsaReturn"));
69 oper.setStyle(org.apache.axis.constants.Style.RPC);
70 oper.setUse(org.apache.axis.constants.Use.ENCODED);
71 _operations[1] = oper;
73 oper = new org.apache.axis.description.OperationDesc();
74 oper.setName("getpredict");
75 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
76 new javax.xml.namespace.QName(
77 "http://www.w3.org/2001/XMLSchema", "string"),
78 java.lang.String.class,
79 org.apache.axis.description.ParameterDesc.IN, false, false);
80 oper.setReturnType(new javax.xml.namespace.QName(
81 "http://simple.objects.vamsas", "Secstructpred"));
82 oper.setReturnClass(vamsas.objects.simple.Secstructpred.class);
83 oper.setReturnQName(new javax.xml.namespace.QName("",
85 oper.setStyle(org.apache.axis.constants.Style.RPC);
86 oper.setUse(org.apache.axis.constants.Use.ENCODED);
87 _operations[2] = oper;
89 oper = new org.apache.axis.description.OperationDesc();
90 oper.setName("getresult");
91 oper.addParameter(new javax.xml.namespace.QName("", "job_id"),
92 new javax.xml.namespace.QName(
93 "http://www.w3.org/2001/XMLSchema", "string"),
94 java.lang.String.class,
95 org.apache.axis.description.ParameterDesc.IN, false, false);
96 oper.setReturnType(new javax.xml.namespace.QName(
97 "http://simple.objects.vamsas", "JpredResult"));
98 oper.setReturnClass(vamsas.objects.simple.JpredResult.class);
99 oper.setReturnQName(new javax.xml.namespace.QName("", "getresultReturn"));
100 oper.setStyle(org.apache.axis.constants.Style.RPC);
101 oper.setUse(org.apache.axis.constants.Use.ENCODED);
102 _operations[3] = oper;
106 public JpredSoapBindingStub() throws org.apache.axis.AxisFault
111 public JpredSoapBindingStub(java.net.URL endpointURL,
112 javax.xml.rpc.Service service) throws org.apache.axis.AxisFault
115 super.cachedEndpoint = endpointURL;
118 public JpredSoapBindingStub(javax.xml.rpc.Service service)
119 throws org.apache.axis.AxisFault
123 super.service = new org.apache.axis.client.Service();
127 super.service = service;
130 javax.xml.namespace.QName qName;
131 java.lang.Class beansf = org.apache.axis.encoding.ser.BeanSerializerFactory.class;
132 java.lang.Class beandf = org.apache.axis.encoding.ser.BeanDeserializerFactory.class;
134 * java.lang.Class enumsf =
135 * org.apache.axis.encoding.ser.EnumSerializerFactory.class; java.lang.Class
136 * enumdf = org.apache.axis.encoding.ser.EnumDeserializerFactory.class;
137 * java.lang.Class arraysf =
138 * org.apache.axis.encoding.ser.ArraySerializerFactory.class;
139 * java.lang.Class arraydf =
140 * org.apache.axis.encoding.ser.ArrayDeserializerFactory.class;
141 * java.lang.Class simplesf =
142 * org.apache.axis.encoding.ser.SimpleSerializerFactory.class;
143 * java.lang.Class simpledf =
144 * org.apache.axis.encoding.ser.SimpleDeserializerFactory.class;
145 * java.lang.Class simplelistsf =
146 * org.apache.axis.encoding.ser.SimpleListSerializerFactory.class;
147 * java.lang.Class simplelistdf =
148 * org.apache.axis.encoding.ser.SimpleListDeserializerFactory.class;
150 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
152 cachedSerQNames.add(qName);
153 cls = vamsas.objects.simple.JpredResult.class;
154 cachedSerClasses.add(cls);
155 cachedSerFactories.add(beansf);
156 cachedDeserFactories.add(beandf);
158 qName = new javax.xml.namespace.QName("simple.objects.vamsas", "Result");
159 cachedSerQNames.add(qName);
160 cls = vamsas.objects.simple.Result.class;
161 cachedSerClasses.add(cls);
162 cachedSerFactories.add(beansf);
163 cachedDeserFactories.add(beandf);
165 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
167 cachedSerQNames.add(qName);
168 cls = vamsas.objects.simple.Secstructpred.class;
169 cachedSerClasses.add(cls);
170 cachedSerFactories.add(beansf);
171 cachedDeserFactories.add(beandf);
173 qName = new javax.xml.namespace.QName("http://simple.objects.vamsas",
175 cachedSerQNames.add(qName);
176 cls = vamsas.objects.simple.Msfalignment.class;
177 cachedSerClasses.add(cls);
178 cachedSerFactories.add(beansf);
179 cachedDeserFactories.add(beandf);
181 qName = new javax.xml.namespace.QName("simple.objects.vamsas",
183 cachedSerQNames.add(qName);
184 cls = vamsas.objects.simple.Sequence.class;
185 cachedSerClasses.add(cls);
186 cachedSerFactories.add(beansf);
187 cachedDeserFactories.add(beandf);
191 protected org.apache.axis.client.Call createCall()
192 throws java.rmi.RemoteException
196 org.apache.axis.client.Call _call = (org.apache.axis.client.Call) super.service
198 if (super.maintainSessionSet)
200 _call.setMaintainSession(super.maintainSession);
202 if (super.cachedUsername != null)
204 _call.setUsername(super.cachedUsername);
206 if (super.cachedPassword != null)
208 _call.setPassword(super.cachedPassword);
210 if (super.cachedEndpoint != null)
212 _call.setTargetEndpointAddress(super.cachedEndpoint);
214 if (super.cachedTimeout != null)
216 _call.setTimeout(super.cachedTimeout);
218 if (super.cachedPortName != null)
220 _call.setPortName(super.cachedPortName);
222 java.util.Enumeration keys = super.cachedProperties.keys();
223 while (keys.hasMoreElements())
225 java.lang.String key = (java.lang.String) keys.nextElement();
226 _call.setProperty(key, super.cachedProperties.get(key));
228 // All the type mapping information is registered
229 // when the first call is made.
230 // The type mapping information is actually registered in
231 // the TypeMappingRegistry of the service, which
232 // is the reason why registration is only needed for the first call.
237 // must set encoding style before registering serializers
238 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
239 _call.setEncodingStyle(org.apache.axis.Constants.URI_SOAP11_ENC);
240 for (int i = 0; i < cachedSerFactories.size(); ++i)
242 java.lang.Class cls = (java.lang.Class) cachedSerClasses.get(i);
243 javax.xml.namespace.QName qName = (javax.xml.namespace.QName) cachedSerQNames
245 java.lang.Class sf = (java.lang.Class) cachedSerFactories
247 java.lang.Class df = (java.lang.Class) cachedDeserFactories
249 _call.registerTypeMapping(cls, qName, sf, df, false);
254 } catch (java.lang.Throwable _t)
256 throw new org.apache.axis.AxisFault(
257 "Failure trying to get the Call object", _t);
261 public java.lang.String predict(vamsas.objects.simple.Sequence seq)
262 throws java.rmi.RemoteException
264 if (super.cachedEndpoint == null)
266 throw new org.apache.axis.NoEndPointException();
268 org.apache.axis.client.Call _call = createCall();
269 _call.setOperation(_operations[0]);
270 _call.setUseSOAPAction(true);
271 _call.setSOAPActionURI("");
272 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
273 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
276 setRequestHeaders(_call);
277 setAttachments(_call);
278 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
281 if (_resp instanceof java.rmi.RemoteException)
283 throw (java.rmi.RemoteException) _resp;
287 extractAttachments(_call);
290 return (java.lang.String) _resp;
291 } catch (java.lang.Exception _exception)
293 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
294 _resp, java.lang.String.class);
299 public java.lang.String predictOnMsa(
300 vamsas.objects.simple.Msfalignment msf)
301 throws java.rmi.RemoteException
303 if (super.cachedEndpoint == null)
305 throw new org.apache.axis.NoEndPointException();
307 org.apache.axis.client.Call _call = createCall();
308 _call.setOperation(_operations[1]);
309 _call.setUseSOAPAction(true);
310 _call.setSOAPActionURI("");
311 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
312 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
315 setRequestHeaders(_call);
316 setAttachments(_call);
317 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
320 if (_resp instanceof java.rmi.RemoteException)
322 throw (java.rmi.RemoteException) _resp;
326 extractAttachments(_call);
329 return (java.lang.String) _resp;
330 } catch (java.lang.Exception _exception)
332 return (java.lang.String) org.apache.axis.utils.JavaUtils.convert(
333 _resp, java.lang.String.class);
338 public vamsas.objects.simple.Secstructpred getpredict(
339 java.lang.String job_id) throws java.rmi.RemoteException
341 if (super.cachedEndpoint == null)
343 throw new org.apache.axis.NoEndPointException();
345 org.apache.axis.client.Call _call = createCall();
346 _call.setOperation(_operations[2]);
347 _call.setUseSOAPAction(true);
348 _call.setSOAPActionURI("");
349 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
350 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
353 setRequestHeaders(_call);
354 setAttachments(_call);
355 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
358 if (_resp instanceof java.rmi.RemoteException)
360 throw (java.rmi.RemoteException) _resp;
364 extractAttachments(_call);
367 return (vamsas.objects.simple.Secstructpred) _resp;
368 } catch (java.lang.Exception _exception)
370 return (vamsas.objects.simple.Secstructpred) org.apache.axis.utils.JavaUtils
371 .convert(_resp, vamsas.objects.simple.Secstructpred.class);
376 public vamsas.objects.simple.JpredResult getresult(java.lang.String job_id)
377 throws java.rmi.RemoteException
379 if (super.cachedEndpoint == null)
381 throw new org.apache.axis.NoEndPointException();
383 org.apache.axis.client.Call _call = createCall();
384 _call.setOperation(_operations[3]);
385 _call.setUseSOAPAction(true);
386 _call.setSOAPActionURI("");
387 _call.setSOAPVersion(org.apache.axis.soap.SOAPConstants.SOAP11_CONSTANTS);
388 _call.setOperationName(new javax.xml.namespace.QName("vamsas",
391 setRequestHeaders(_call);
392 setAttachments(_call);
393 java.lang.Object _resp = _call.invoke(new java.lang.Object[]
396 if (_resp instanceof java.rmi.RemoteException)
398 throw (java.rmi.RemoteException) _resp;
402 extractAttachments(_call);
405 return (vamsas.objects.simple.JpredResult) _resp;
406 } catch (java.lang.Exception _exception)
408 return (vamsas.objects.simple.JpredResult) org.apache.axis.utils.JavaUtils
409 .convert(_resp, vamsas.objects.simple.JpredResult.class);