2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
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8 * Jalview - A Sequence Alignment Editor and Viewer
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9 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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11 * This program is free software; you can redistribute it and/or
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12 * modify it under the terms of the GNU General Public License
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13 * as published by the Free Software Foundation; either version 2
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14 * of the License, or (at your option) any later version.
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16 * This program is distributed in the hope that it will be useful,
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17 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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18 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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19 * GNU General Public License for more details.
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21 * You should have received a copy of the GNU General Public License
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22 * along with this program; if not, write to the Free Software
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23 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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25 package jalview.binding;
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27 import org.exolab.castor.xml.MarshalException;
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28 import org.exolab.castor.xml.Marshaller;
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29 import org.exolab.castor.xml.Unmarshaller;
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30 import org.exolab.castor.xml.ValidationException;
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32 import org.xml.sax.ContentHandler;
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34 //---------------------------------/
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35 //- Imported classes and packages -/
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36 //---------------------------------/
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37 import java.io.IOException;
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38 import java.io.Reader;
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39 import java.io.Serializable;
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40 import java.io.Writer;
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42 import java.util.Enumeration;
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43 import java.util.Vector;
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47 * Class JalviewModelSequence2.
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49 * @version $Revision$ $Date$
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51 public class JalviewModelSequence2 implements java.io.Serializable {
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52 //--------------------------/
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53 //- Class/Member Variables -/
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54 //--------------------------/
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59 private java.util.Vector _items;
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64 public JalviewModelSequence2() {
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66 _items = new Vector();
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68 //-- jalview.binding.JalviewModelSequence2()
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71 public void addJalviewModelSequence2Item(
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72 jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
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73 throws java.lang.IndexOutOfBoundsException {
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74 _items.addElement(vJalviewModelSequence2Item);
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76 //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item)
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79 * Method addJalviewModelSequence2Item
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84 * @param vJalviewModelSequence2Item
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86 public void addJalviewModelSequence2Item(int index,
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87 jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
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88 throws java.lang.IndexOutOfBoundsException {
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89 _items.insertElementAt(vJalviewModelSequence2Item, index);
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91 //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item)
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94 * Method enumerateJalviewModelSequence2Item
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98 * @return Enumeration
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100 public java.util.Enumeration enumerateJalviewModelSequence2Item() {
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101 return _items.elements();
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103 //-- java.util.Enumeration enumerateJalviewModelSequence2Item()
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106 * Method getJalviewModelSequence2Item
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111 * @return JalviewModelSequence2Item
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113 public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(
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114 int index) throws java.lang.IndexOutOfBoundsException {
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115 //-- check bounds for index
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116 if ((index < 0) || (index > _items.size())) {
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117 throw new IndexOutOfBoundsException();
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120 return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
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122 //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int)
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125 * Method getJalviewModelSequence2Item
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129 * @return JalviewModelSequence2Item
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131 public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() {
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132 int size = _items.size();
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133 jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];
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135 for (int index = 0; index < size; index++) {
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136 mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
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141 //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()
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144 * Method getJalviewModelSequence2ItemCount
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150 public int getJalviewModelSequence2ItemCount() {
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151 return _items.size();
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153 //-- int getJalviewModelSequence2ItemCount()
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162 public boolean isValid() {
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165 } catch (org.exolab.castor.xml.ValidationException vex) {
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171 //-- boolean isValid()
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180 public void marshal(java.io.Writer out)
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181 throws org.exolab.castor.xml.MarshalException,
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182 org.exolab.castor.xml.ValidationException {
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183 Marshaller.marshal(this, out);
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185 //-- void marshal(java.io.Writer)
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194 public void marshal(org.xml.sax.ContentHandler handler)
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195 throws java.io.IOException, org.exolab.castor.xml.MarshalException,
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196 org.exolab.castor.xml.ValidationException {
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197 Marshaller.marshal(this, handler);
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199 //-- void marshal(org.xml.sax.ContentHandler)
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202 * Method removeAllJalviewModelSequence2Item
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205 public void removeAllJalviewModelSequence2Item() {
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206 _items.removeAllElements();
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208 //-- void removeAllJalviewModelSequence2Item()
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211 * Method removeJalviewModelSequence2Item
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216 * @return JalviewModelSequence2Item
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218 public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(
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220 java.lang.Object obj = _items.elementAt(index);
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221 _items.removeElementAt(index);
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223 return (jalview.binding.JalviewModelSequence2Item) obj;
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225 //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int)
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228 * Method setJalviewModelSequence2Item
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233 * @param vJalviewModelSequence2Item
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235 public void setJalviewModelSequence2Item(int index,
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236 jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
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237 throws java.lang.IndexOutOfBoundsException {
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238 //-- check bounds for index
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239 if ((index < 0) || (index > _items.size())) {
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240 throw new IndexOutOfBoundsException();
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243 _items.setElementAt(vJalviewModelSequence2Item, index);
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245 //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item)
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248 * Method setJalviewModelSequence2Item
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252 * @param jalviewModelSequence2ItemArray
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254 public void setJalviewModelSequence2Item(
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255 jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray) {
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257 _items.removeAllElements();
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259 for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++) {
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260 _items.addElement(jalviewModelSequence2ItemArray[i]);
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263 //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item)
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273 public static java.lang.Object unmarshal(java.io.Reader reader)
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274 throws org.exolab.castor.xml.MarshalException,
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275 org.exolab.castor.xml.ValidationException {
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276 return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class,
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279 //-- java.lang.Object unmarshal(java.io.Reader)
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285 public void validate() throws org.exolab.castor.xml.ValidationException {
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286 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
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287 validator.validate(this);
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289 //-- void validate()
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