2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.datamodel;
23 import java.util.Iterator;
25 public class AlignmentRowsCollection implements Iterable<Integer>
33 HiddenSequences hidden;
35 public AlignmentRowsCollection(int s, int e, AlignmentI al)
40 hidden = al.getHiddenSequences();
44 public Iterator<Integer> iterator()
46 return new AllRowsIterator(start, end, alignment);
50 * Answers if the sequence at the position is hidden.
52 public boolean isHidden(int seq)
54 return hidden.isHidden(seq);
57 public SequenceI getSequence(int seq)
59 return alignment.getSequenceAtAbsoluteIndex(seq);