2 * Jalview - A Sequence Alignment Editor and Viewer
3 * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
5 * This program is free software; you can redistribute it and/or
6 * modify it under the terms of the GNU General Public License
7 * as published by the Free Software Foundation; either version 2
8 * of the License, or (at your option) any later version.
10 * This program is distributed in the hope that it will be useful,
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 * GNU General Public License for more details.
15 * You should have received a copy of the GNU General Public License
16 * along with this program; if not, write to the Free Software
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
19 package jalview.datamodel;
30 public class Annotation
33 public String displayCharacter = "";
36 public String description = ""; // currently used as mouse over
39 public char secondaryStructure = ' '; // recognises H and E
44 // add visual cues here
47 public Color colour = Color.black;
50 * Creates a new Annotation object.
52 * @param displayChar DOCUMENT ME!
53 * @param desc DOCUMENT ME!
54 * @param ss DOCUMENT ME!
55 * @param val DOCUMENT ME!
57 public Annotation(String displayChar, String desc, char ss, float val)
59 displayCharacter = displayChar;
61 secondaryStructure = ss;
66 * Creates a new Annotation object.
68 * @param displayChar DOCUMENT ME!
69 * @param desc DOCUMENT ME!
70 * @param ss DOCUMENT ME!
71 * @param val DOCUMENT ME!
72 * @param colour DOCUMENT ME!
74 public Annotation(String displayChar, String desc, char ss, float val,
77 this(displayChar, desc, ss, val);