2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.datamodel;
24 * An enumeration of the kinds of mapping (from nucleotide or peptide, to
25 * nucleotide or peptide), and the corresponding word lengths
27 public enum MappingType
29 NucleotideToPeptide(3, 1)
32 public MappingType getInverse()
34 return PeptideToNucleotide;
37 PeptideToNucleotide(1, 3)
40 public MappingType getInverse()
42 return NucleotideToPeptide;
45 NucleotideToNucleotide(1, 1)
48 public MappingType getInverse()
50 return NucleotideToNucleotide;
53 PeptideToPeptide(1, 1)
56 public MappingType getInverse()
58 return PeptideToPeptide;
62 private int fromRatio;
66 private MappingType(int fromSize, int toSize)
72 public abstract MappingType getInverse();
74 public int getFromRatio()
79 public int getToRatio()