2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.ext.varna;
24 import java.applet.Applet;
26 import java.awt.event.*;
28 import javax.swing.JPanel;
30 import jalview.api.AlignmentViewPanel;
31 import jalview.api.FeatureRenderer;
32 import jalview.api.SequenceRenderer;
33 import jalview.api.SequenceStructureBinding;
34 import jalview.api.StructureSelectionManagerProvider;
35 import jalview.datamodel.*;
36 import jalview.structure.*;
39 import org.jmol.api.*;
40 import org.jmol.adapter.smarter.SmarterJmolAdapter;
42 import org.jmol.popup.*;
43 import org.jmol.viewer.JmolConstants;
44 import org.jmol.viewer.Viewer;
46 import jalview.schemes.*;
48 import fr.orsay.lri.varna.applications.*;
50 public abstract class JalviewVarnaBinding implements StructureListener,
51 SequenceStructureBinding, ComponentListener,
52 StructureSelectionManagerProvider