2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.gui;
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23 import java.awt.event.*;
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24 import javax.swing.*;
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25 import javax.swing.event.*;
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27 import jalview.datamodel.*;
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28 import jalview.jbgui.*;
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29 import jalview.schemes.*;
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31 public class SliderPanel
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32 extends GSliderPanel
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34 static JInternalFrame conservationSlider;
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35 static JInternalFrame PIDSlider;
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37 boolean forConservation = true;
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40 public SliderPanel(AlignmentPanel ap, int value, boolean forConserve,
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45 forConservation = forConserve;
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46 undoButton.setVisible(false);
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47 applyButton.setVisible(false);
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49 if (forConservation)
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51 label.setText("Enter value to increase conservation visibility");
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52 slider.setMinimum(0);
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53 slider.setMaximum(50);
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57 label.setText("Enter % identity above which to colour residues");
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58 slider.setMinimum(0);
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59 slider.setMaximum(100);
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62 slider.addChangeListener(new ChangeListener()
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64 public void stateChanged(ChangeEvent evt)
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66 valueField.setText(slider.getValue() + "");
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67 valueChanged(slider.getValue());
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71 slider.setValue(value);
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72 valueField.setText(value + "");
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75 public static int setConservationSlider(AlignmentPanel ap,
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76 ColourSchemeI cs, String source)
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78 SliderPanel sp = null;
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79 ConservationColourScheme ccs = (ConservationColourScheme) cs;
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81 if (conservationSlider == null)
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83 sp = new SliderPanel(ap, ccs.inc, true, cs);
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84 conservationSlider = new JInternalFrame();
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85 conservationSlider.setContentPane(sp);
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86 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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90 sp = (SliderPanel) conservationSlider.getContentPane();
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94 conservationSlider.setTitle("Conservation Colour Increment (" +
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97 if (ap.av.alignment.getGroups() != null)
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99 sp.setAllGroupsCheckEnabled(true);
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103 sp.setAllGroupsCheckEnabled(false);
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106 return sp.getValue();
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109 public static void showConservationSlider()
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113 PIDSlider.setClosed(true);
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116 catch (Exception ex)
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120 if (!conservationSlider.isVisible())
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122 Desktop.addInternalFrame(conservationSlider,
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123 conservationSlider.getTitle(), 420, 90, false);
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124 conservationSlider.addInternalFrameListener(new javax.swing.event.
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125 InternalFrameAdapter()
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127 public void internalFrameClosed(
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128 javax.swing.event.InternalFrameEvent e)
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130 conservationSlider = null;
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133 conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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137 public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs,
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140 SliderPanel pid = null;
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142 int threshold = 50;
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144 if (cs instanceof ResidueColourScheme)
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146 threshold = ( ( (ResidueColourScheme) cs).getThreshold());
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148 else if (cs instanceof ScoreColourScheme)
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150 threshold = ( ( (ScoreColourScheme) cs).getThreshold());
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153 if (PIDSlider == null)
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155 pid = new SliderPanel(ap, threshold, false, cs);
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156 PIDSlider = new JInternalFrame();
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157 PIDSlider.setContentPane(pid);
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158 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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162 pid = (SliderPanel) PIDSlider.getContentPane();
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166 PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
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168 if (ap.av.alignment.getGroups() != null)
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170 pid.setAllGroupsCheckEnabled(true);
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174 pid.setAllGroupsCheckEnabled(false);
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177 return pid.getValue();
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180 public static void showPIDSlider()
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184 conservationSlider.setClosed(true);
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185 conservationSlider = null;
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187 catch (Exception ex)
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191 if (!PIDSlider.isVisible())
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193 Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90,
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195 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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196 PIDSlider.addInternalFrameListener(new javax.swing.event.
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197 InternalFrameAdapter()
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199 public void internalFrameClosed(
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200 javax.swing.event.InternalFrameEvent e)
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205 PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER);
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209 public void valueChanged(int i)
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216 ColourSchemeI toChange = null;
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217 Vector allGroups = null;
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218 int groupIndex = 0;
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220 if (allGroupsCheck.isSelected())
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222 allGroups = ap.av.alignment.getGroups();
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223 groupIndex = allGroups.size() - 1;
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230 while (groupIndex > -1)
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232 if (allGroups != null)
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234 toChange = ( (SequenceGroup) allGroups.get(groupIndex)).cs;
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237 if (forConservation)
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239 if (toChange instanceof ConservationColourScheme)
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241 ( (ConservationColourScheme) toChange).inc = i;
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246 ( (ResidueColourScheme) toChange).setThreshold(i);
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252 ap.seqPanel.seqCanvas.repaint();
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255 public void setAllGroupsCheckEnabled(boolean b)
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257 allGroupsCheck.setEnabled(b);
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260 public void valueField_actionPerformed(ActionEvent e)
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264 int i = Integer.parseInt(valueField.getText());
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265 slider.setValue(i);
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267 catch (Exception ex)
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269 valueField.setText(slider.getValue() + "");
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273 public void setValue(int value)
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275 slider.setValue(value);
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278 public int getValue()
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280 return Integer.parseInt(valueField.getText());
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